EsuBft154_25a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft154_25a-0001
Unique Name	EsuBft154_25a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_340	contig	Scaffold_340:468947..472907 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft154_25
Protein domains	IPR000270
Protein domains	G3DSA
Protein domains	SSF54277
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	244
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Cross References

External references for this mRNA


Database	Accession
GO	0031227

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft154_25a	EsuBft154_25a	Ectocarpus subulatus male Bft15b	gene	Scaffold_340 468947..472907 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft154_25a-0001	EsuBft154_25	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_340 469836..472190 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft154_25a-0001-exon	agat-exon-109661	Ectocarpus subulatus male Bft15b	exon	Scaffold_340 468947..469188 +
EsuBft154_25a-0001-exon	agat-exon-109663	Ectocarpus subulatus male Bft15b	exon	Scaffold_340 469733..470177 +
EsuBft154_25a-0001-exon	EsuBft154_25a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_340 471006..472598 +
EsuBft154_25a-0001-exon	agat-exon-109662	Ectocarpus subulatus male Bft15b	exon	Scaffold_340 472746..472907 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft154_25a-0001-exon	agat-five_prime_utr-3120	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_340 468947..469188 +
EsuBft154_25a-0001-exon	agat-five_prime_utr-3121	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_340 469733..469835 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft154_25a-0001-cds	EsuBft154_25a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_340 469836..470177 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft154_25a-0001-exon	agat-three_prime_utr-4811	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_340 472191..472598 +
EsuBft154_25a-0001-exon	agat-three_prime_utr-4812	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_340 472746..472907 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_340:468947..472907+
coding sequence from alignment at Scaffold_340:468947..472907+

spliced messenger RNA

>EsuBft154_25a-0001 ID=EsuBft154_25a-0001|Name=EsuBft154_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2442bp|location=Sequence derived from alignment at Scaffold_340:468947..472907+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AACAAGCGTTATACTTGTACGGCACACGGCAGGCACACACGCGAAAAAAG
CAACGTGGTCGGCGCCATTTCACCTCGTTACCTCGCAACCCTATCCTCTT
CACACAATGAATGCCGCGGTGCGAAACTACGCCGCTTGCCACAACAGCAG
TCAGCAAGCTCCGCTCGCCTTCCACATCTCATCCTGCGCAGACGGTACAA
TTGATCATCATGGATGTCCAATAATTCTCCTCCATCGTTGAGGTTCTTGG
GGAACGTGGAGAACCTGGTTTTCTAGAAGCTCTCTCGCTCTGCTCTCTCT
CCTCTCGCCTGCCCGTGCCCTTCCTCCTCACAGCTCACAACATCCATGAA
CGCCATCAACCACAACAACAACAATAACCGCTACAACAACGACAAGACGA
TGACAACCCCTTCCATCAAGATTAACTTCCAGGGCGCTTCACGCGACGTG
AACGTTCCGGCTCCGGTTTCGCTCGCCAGCCTCCAAGCGGCCATCGCCGC
CGCCTTCGATGCTGAGCTGCCTGTCCGCTCCCCCGCGGGTGAGGCCGCCA
AGGACACCGACCTGTCCTTCACGTACAAGGATCCTGATGGGGACGACATC
GTGTTCGACAAGGATTCTGAGCTAAAGCTGGCCGTGCGCCTATGCCCCAG
CTCGCTCGAGATCTCGGCTACCCTGAAGGAAAGCGAGCCTGCTAAGAAGC
CCGACCCCGAAGCGAGGCTGTACAAGATCGCCGCCCGTAACCTGCGCGAG
TACAACGGCGTGCCCTCGATGACCGCGCCCAAGCTCATCAAGACCCTGGC
TTTCCTCAAGCTGAACCCGCAACGCCTCGTGAAGCAGGGCCTTGCTCCCA
AGGTCCTTCTGGCTCGCATGAAGGCCGAAGCCGCCAACAACGCCAAGGTA
TCGAAAGTTCCTCTTGGTGACGGCAAGAACAACGAGGATCTCGCCGAATC
GGTCGCCGCCGGCATGGAACTGATGAGCGTGGAGGACGATAAGAAGGAGT
GGAACGACGGCTTCGTCTCCGCTGAGTCGGACGCGTCTGCTGCCGCGGTG
CCCATCACCGCCAAGACGTCCACCCCCGACAACGACAACGAGGAGGAGAA
CAACGACGCTGCGCCCGAGACCAAGAAGGACCTCATCCACAAGGCATTCA
TCACCGGTGGCATCCAGCTCCGCCCCCGCGAGGTCCGGCCCCTGCTCGTC
GCCCTGGACGTCCGCCCCTGCCGGCTGGCCAAGCTCGGCCTCGTCGACGG
CAAGGATCTCCGCGCCATGCTCCGAGCCGAGAAGAAGGCCGCCCACAAGC
GTTGCGACCATGGCAACAACAACGATGACACCGCCGCCCTCCACCACCGG
CGCCACCACCACCGCGACTACCACCGCCAGCAGCACCGCATGGCCGGCCG
CCCCCACCCCTTCGCCCCGCCTCCCCCTTCCCCCCCGGCTCACCAGGAGG
TCGGCGACGCCATGTTTGCCGCGCGCGGCGGCAGGGGACGCCACGGTTCC
CCCCACCGCCACGGCCCCCCTCACCGCCACGGTGCGCCGCACCAACACGG
CCCGCCCCCTCCGATGAAAGGGATGATGCGCGGCGGCCGCCCCCACCCGT
TCGCCCCCCCCCCTCCCCCGGCTCACATGGAGGACCCCGGTGACGCGCCC
GGTGGCGGAGGCGGTGGTCACCGCGGTGTCCCTCTCTTCCACCCGGTCCA
CCAGCACTACGCGGAGGTGTTCGACGAGGATGAGAGAGGCCACCCCGGTG
TCCACCCCCACCATGGCCCTCCTCGTTGGATGGCGATCCGCAACTCTCAC
GGCGGTGGCTACGGCGGCGGCTACGGCGGCGGTGTTGGCCAGCAGCAGCG
CAGGGACTTCTACTGGGGGTGAGCATCTTCGTCACCGTCAAGCCGAAGGA
GGAGCCTAGCCGTCTACTACCGTTCTGCCCTTGTATCGCGTTTCTTGGCG
CAGGATTGAAGCACGGCATGAGAGTAGTTGATTTGGTGTAGCCTTTTCTT
TCGGTACTAATTGCAATTGGGCAGAAGCCTCCCTCGGAAACACTGATACG
AGGGGTGGAGAGCGGAAGGTTTGAGTAGACGAGAACCGTTTCACCGTTTG
GCTTCTGCACTCATGCAATACTACGATAGGCGTATATGTTCGAAACATCT
TTCAAAAGTAAAACCGTCTTGGTTTGATTTGAGTTCGGCCTTTCGTGGTT
TCTTTGTTTTCTTCTGTGCTCTCGTTGTTGAGGGAGTCGTCTGTGTTGCG
TGAAAGTGTATCATCGCTGTGCGACGCAAAGGTGTTGTATTGGGTAAGAA
GGGACTGCCGTGCACCCACTACTGCTGTCAGCAGCAGTGTTGTATGAGGA
GACAGCGGTCGGTCGTAACACCGGCGGTTCACAAGTGGAAGTGGCATTAT
GGAAGTCTCAGGGAGGCACACGTCGCGCAGCGGTGTGTCTAT

protein sequence of EsuBft154_25a-0001

>EsuBft154_25 ID=EsuBft154_25|Name=EsuBft154_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=508bp
MNAINHNNNNNRYNNDKTMTTPSIKINFQGASRDVNVPAPVSLASLQAAI
AAAFDAELPVRSPAGEAAKDTDLSFTYKDPDGDDIVFDKDSELKLAVRLC
PSSLEISATLKESEPAKKPDPEARLYKIAARNLREYNGVPSMTAPKLIKT
LAFLKLNPQRLVKQGLAPKVLLARMKAEAANNAKVSKVPLGDGKNNEDLA
ESVAAGMELMSVEDDKKEWNDGFVSAESDASAAAVPITAKTSTPDNDNEE
ENNDAAPETKKDLIHKAFITGGIQLRPREVRPLLVALDVRPCRLAKLGLV
DGKDLRAMLRAEKKAAHKRCDHGNNNDDTAALHHRRHHHRDYHRQQHRMA
GRPHPFAPPPPSPPAHQEVGDAMFAARGGRGRHGSPHRHGPPHRHGAPHQ
HGPPPPMKGMMRGGRPHPFAPPPPPAHMEDPGDAPGGGGGGHRGVPLFHP
VHQHYAEVFDEDERGHPGVHPHHGPPRWMAIRNSHGGGYGGGYGGGVGQQ
QRRDFYWG

mRNA from alignment at Scaffold_340:468947..472907+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft154_25a-0001 ID=EsuBft154_25a-0001|Name=EsuBft154_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3961bp|location=Sequence derived from alignment at Scaffold_340:468947..472907+ (Ectocarpus subulatus male Bft15b)
AACAAGCGTTATACTTGTACGGCACACGGCAGGCACACACGCGAAAAAAG
CAACGTGGTCGGCGCCATTTCACCTCGTTACCTCGCAACCCTATCCTCTT
CACACAATGAATGCCGCGGTGCGAAACTACGCCGCTTGCCACAACAGCAG
TCAGCAAGCTCCGCTCGCCTTCCACATCTCATCCTGCGCAGACGGTACAA
TTGATCATCATGGATGTCCAATAATTCTCCTCCATCGTTGAGGTACGAAT
GCCGAGGGAGTACCAGAATCCTGGCAACGTGCCGTCCCCTCTGTGTCGCG
TTGCCATCATCCAATGCTAACACCAACCACCAGTACCGTCAACGTCTACG
TCAACGTCTACACTCTGCCTGCTCTGCAGCTCTGGAGCTCGCAGAAGAGA
AGACATATTTTTCAGAATCATTCGAAAAACGTTTTCTACCCTCAACCACT
TCGCAAATTTGAAATGAAAACCGCCACGTTTTTTATATCCATCCACCACC
AAACGGCTTGCACGAGATGACTAAAACATGCTTAAGTAGCCTGTGAAGAG
CTCGTCGAAGCCACCAGCGCACAAACAATTTTGTCCGGATTTTGACACAT
GGCCCACAGAGCAGCATAAGACGGCCGACTCGTTGTGAGCCTCGCATCAT
CTTGTCGCTACCGCAGTTCGAACATCCGAACTAGGTTCTTGTTAAAGGCA
AGAAACATTCGAGAGATGGGACCATCGGGATGATCGTTCTTCAAAAATCG
TTCTTCAAGAATCGTTCTTCAAGAATCGTTCTGTAGGTTCTTGGGGAACG
TGGAGAACCTGGTTTTCTAGAAGCTCTCTCGCTCTGCTCTCTCTCCTCTC
GCCTGCCCGTGCCCTTCCTCCTCACAGCTCACAACATCCATGAACGCCAT
CAACCACAACAACAACAATAACCGCTACAACAACGACAAGACGATGACAA
CCCCTTCCATCAAGATTAACTTCCAGGGCGCTTCACGCGACGTGAACGTT
CCGGCTCCGGTTTCGCTCGCCAGCCTCCAAGCGGCCATCGCCGCCGCCTT
CGATGCTGAGCTGCCTGTCCGCTCCCCCGCGGGTGAGGCCGCCAAGGACA
CCGACCTGTCCTTCACGTACAAGGATCCTGATGGGGACGACATCGTGTTC
GACAAGGATTCTGAGCTAAAGCTGGCCGTGCGCCTATGCCCCAGCTCGCT
CGAGATCTCGGCTACCCTGAAGGAAAGCGAGGTGAGCAGATTGGCATCAG
ATGTTTGCTCTTGTTCAAGGAGAGGAATAAATCACATGGTGTAGCCGAGG
GTGAGACTTGCGCGAGCGGTCACGTACTCGTAGGGCACACGCCTCGGTAC
CGTCGCGAGCAGCTAGTCGTGCGTGCTACCATACTCGCTCCCCGTGCTCG
GGCTGCTCCATTCGTTGTAGAGATATTTTATTTTTGGTTGCTTGTTAGCT
GGGCGAGACATGCGTACTTCTGTACTGCTGTAGTGGCGGCCCCGAATCGG
GTGATCTCGCTCTCTCTCGCCCTTGTGTTGGTCGCCGCATCGACGTTGGC
CTTCTGACTTGCAGCATATGCCGAGCTAACATTGGTCAATGGTACCACCC
GGTACGGTATGTGGCGATTGTCTCCATCGTCGACTGCGTTCAAAACTCGA
CCCGATTGTAGGAAATTGGAACTTATCCCCTGCTGTAGATGCATACACTT
CCACACTAAATAATACTGCTGTACTGCTCTGTTTTTGTGCTGTACATAGC
AGCGGGGTAGAGCAGTAGTCCTCCCTGTTTATGCCCTGCCAGAGCCGGGA
CAGTAAAGCAAACAACCACCGATATAAAATCTCTAACTCCCCCCAATTGT
CACATTCTTGCCAATGGTTTTCTATTTTCGTTGCCGGCAATTACGCATCG
GAATCTTACCGTCATGATGTGTCCAGAAGTTGGCCCTATTTTTCCTGCGT
CGTCGAGAATTCCTTTTCCCCCACAACTGCACCGCGCTGAATCCCCCCTT
GCCTTCCCTTCCCCACCGCGTGCACCTCTTCCCGCTTCCCTCTTTACATG
TAACCTCAGCCTGCTAAGAAGCCCGACCCCGAAGCGAGGCTGTACAAGAT
CGCCGCCCGTAACCTGCGCGAGTACAACGGCGTGCCCTCGATGACCGCGC
CCAAGCTCATCAAGACCCTGGCTTTCCTCAAGCTGAACCCGCAACGCCTC
GTGAAGCAGGGCCTTGCTCCCAAGGTCCTTCTGGCTCGCATGAAGGCCGA
AGCCGCCAACAACGCCAAGGTATCGAAAGTTCCTCTTGGTGACGGCAAGA
ACAACGAGGATCTCGCCGAATCGGTCGCCGCCGGCATGGAACTGATGAGC
GTGGAGGACGATAAGAAGGAGTGGAACGACGGCTTCGTCTCCGCTGAGTC
GGACGCGTCTGCTGCCGCGGTGCCCATCACCGCCAAGACGTCCACCCCCG
ACAACGACAACGAGGAGGAGAACAACGACGCTGCGCCCGAGACCAAGAAG
GACCTCATCCACAAGGCATTCATCACCGGTGGCATCCAGCTCCGCCCCCG
CGAGGTCCGGCCCCTGCTCGTCGCCCTGGACGTCCGCCCCTGCCGGCTGG
CCAAGCTCGGCCTCGTCGACGGCAAGGATCTCCGCGCCATGCTCCGAGCC
GAGAAGAAGGCCGCCCACAAGCGTTGCGACCATGGCAACAACAACGATGA
CACCGCCGCCCTCCACCACCGGCGCCACCACCACCGCGACTACCACCGCC
AGCAGCACCGCATGGCCGGCCGCCCCCACCCCTTCGCCCCGCCTCCCCCT
TCCCCCCCGGCTCACCAGGAGGTCGGCGACGCCATGTTTGCCGCGCGCGG
CGGCAGGGGACGCCACGGTTCCCCCCACCGCCACGGCCCCCCTCACCGCC
ACGGTGCGCCGCACCAACACGGCCCGCCCCCTCCGATGAAAGGGATGATG
CGCGGCGGCCGCCCCCACCCGTTCGCCCCCCCCCCTCCCCCGGCTCACAT
GGAGGACCCCGGTGACGCGCCCGGTGGCGGAGGCGGTGGTCACCGCGGTG
TCCCTCTCTTCCACCCGGTCCACCAGCACTACGCGGAGGTGTTCGACGAG
GATGAGAGAGGCCACCCCGGTGTCCACCCCCACCATGGCCCTCCTCGTTG
GATGGCGATCCGCAACTCTCACGGCGGTGGCTACGGCGGCGGCTACGGCG
GCGGTGTTGGCCAGCAGCAGCGCAGGGACTTCTACTGGGGGTGAGCATCT
TCGTCACCGTCAAGCCGAAGGAGGAGCCTAGCCGTCTACTACCGTTCTGC
CCTTGTATCGCGTTTCTTGGCGCAGGATTGAAGCACGGCATGAGAGTAGT
TGATTTGGTGTAGCCTTTTCTTTCGGTACTAATTGCAATTGGGCAGAAGC
CTCCCTCGGAAACACTGATACGAGGGGTGGAGAGCGGAAGGTTTGAGTAG
ACGAGAACCGTTTCACCGTTTGGCTTCTGCACTCATGCAATACTACGATA
GGCGTATATGTTCGAAACATCTTTCAAAAGTAAAACCGTCTTGGTTTGAT
TTGAGTTCGGCCTTTCGTGGTTTCTTTGTTTTCTTCTGTGCTCTCGTTGT
TGAGGGAGTCGTCTGTGTTGCGTGAAAGTGTATCATCGCTGTGCGACGCA
AAGTAGCTGATTGCGAGCAGGTTAACCACCGAGTTAGTGGCACCGTTTGC
ATGTGGCGTCAGAGTGTTTTTGCAGCGGGTATGCATACGTTGATCTCGCT
GTTTGAGTTCGGACGGGGAGGAGAGTACCGCTCGTGTGGCATACACGAGG
GTGTTGTATTGGGTAAGAAGGGACTGCCGTGCACCCACTACTGCTGTCAG
CAGCAGTGTTGTATGAGGAGACAGCGGTCGGTCGTAACACCGGCGGTTCA
CAAGTGGAAGTGGCATTATGGAAGTCTCAGGGAGGCACACGTCGCGCAGC
GGTGTGTCTAT

Coding sequence (CDS) from alignment at Scaffold_340:468947..472907+

>EsuBft154_25a-0001 ID=EsuBft154_25a-0001|Name=EsuBft154_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1527bp|location=Sequence derived from alignment at Scaffold_340:468947..472907+ (Ectocarpus subulatus male Bft15b)
ATGAACGCCATCAACCACAACAACAACAATAACCGCTACAACAACGACAA
GACGATGACAACCCCTTCCATCAAGATTAACTTCCAGGGCGCTTCACGCG
ACGTGAACGTTCCGGCTCCGGTTTCGCTCGCCAGCCTCCAAGCGGCCATC
GCCGCCGCCTTCGATGCTGAGCTGCCTGTCCGCTCCCCCGCGGGTGAGGC
CGCCAAGGACACCGACCTGTCCTTCACGTACAAGGATCCTGATGGGGACG
ACATCGTGTTCGACAAGGATTCTGAGCTAAAGCTGGCCGTGCGCCTATGC
CCCAGCTCGCTCGAGATCTCGGCTACCCTGAAGGAAAGCGAGCCTGCTAA
GAAGCCCGACCCCGAAGCGAGGCTGTACAAGATCGCCGCCCGTAACCTGC
GCGAGTACAACGGCGTGCCCTCGATGACCGCGCCCAAGCTCATCAAGACC
CTGGCTTTCCTCAAGCTGAACCCGCAACGCCTCGTGAAGCAGGGCCTTGC
TCCCAAGGTCCTTCTGGCTCGCATGAAGGCCGAAGCCGCCAACAACGCCA
AGGTATCGAAAGTTCCTCTTGGTGACGGCAAGAACAACGAGGATCTCGCC
GAATCGGTCGCCGCCGGCATGGAACTGATGAGCGTGGAGGACGATAAGAA
GGAGTGGAACGACGGCTTCGTCTCCGCTGAGTCGGACGCGTCTGCTGCCG
CGGTGCCCATCACCGCCAAGACGTCCACCCCCGACAACGACAACGAGGAG
GAGAACAACGACGCTGCGCCCGAGACCAAGAAGGACCTCATCCACAAGGC
ATTCATCACCGGTGGCATCCAGCTCCGCCCCCGCGAGGTCCGGCCCCTGC
TCGTCGCCCTGGACGTCCGCCCCTGCCGGCTGGCCAAGCTCGGCCTCGTC
GACGGCAAGGATCTCCGCGCCATGCTCCGAGCCGAGAAGAAGGCCGCCCA
CAAGCGTTGCGACCATGGCAACAACAACGATGACACCGCCGCCCTCCACC
ACCGGCGCCACCACCACCGCGACTACCACCGCCAGCAGCACCGCATGGCC
GGCCGCCCCCACCCCTTCGCCCCGCCTCCCCCTTCCCCCCCGGCTCACCA
GGAGGTCGGCGACGCCATGTTTGCCGCGCGCGGCGGCAGGGGACGCCACG
GTTCCCCCCACCGCCACGGCCCCCCTCACCGCCACGGTGCGCCGCACCAA
CACGGCCCGCCCCCTCCGATGAAAGGGATGATGCGCGGCGGCCGCCCCCA
CCCGTTCGCCCCCCCCCCTCCCCCGGCTCACATGGAGGACCCCGGTGACG
CGCCCGGTGGCGGAGGCGGTGGTCACCGCGGTGTCCCTCTCTTCCACCCG
GTCCACCAGCACTACGCGGAGGTGTTCGACGAGGATGAGAGAGGCCACCC
CGGTGTCCACCCCCACCATGGCCCTCCTCGTTGGATGGCGATCCGCAACT
CTCACGGCGGTGGCTACGGCGGCGGCTACGGCGGCGGTGTTGGCCAGCAG
CAGCGCAGGGACTTCTACTGGGGGTGA