EsuBft154_23a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft154_23a-0001
Unique NameEsuBft154_23a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_340contigScaffold_340:492854..496181 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LN84
ProteomeIdEsuBft154_23
Protein domainsIPR022991
Protein domainsIPR029064
Protein domainsPTHR11449
Protein domainsIPR004038
Protein domainsIPR000231
Ownerapollo_admin@sb-roscoff.fr
Note60s ribosomal protein l30 os:euphorbia esula gn:rpl30 pe:3 sv:1 [Automatic annotation]
Nb exon2
Max annot lvl2759|Eukaryota
Length1099
Hectar predicted targeting categoryother localisation
Evalue4.8e-72
EggNOG OGsCOG1911@1|root,KOG2988@2759|Eukaryota
Ec32 ortholog description60S ribosomal protein L30
Ec32 orthologEc-05_003900.1
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameRPL30
KEGG koko:K02866,ko:K02908
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
GOsGO:0000184,GO:0000956,GO:0001889,GO:0001906,GO:0002181,GO:0002376,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006417,GO:0006448,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006952,GO:0006955,GO:0006959,GO:0007275,GO:0007399,GO:0007422,GO:0007568,GO:0008104,GO:0008150,GO:0008152,GO:0008340,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009605,GO:0009607,GO:0009617,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010259,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016070,GO:0016071,GO:0016072,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0019730,GO:0022613,GO:0022625,GO:0022626,GO:0030627,GO:0031099,GO:0031100,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031640,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033119,GO:0033365,GO:0034248,GO:0034250,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0035368,GO:0035821,GO:0036002,GO:0040007,GO:0042254,GO:0042742,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043484,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044364,GO:0044391,GO:0044419,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0045727,GO:0045901,GO:0045934,GO:0046483,GO:0046700,GO:0046907,GO:0048024,GO:0048025,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048731,GO:0048732,GO:0048856,GO:0050684,GO:0050686,GO:0050789,GO:0050794,GO:0050829,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0060255,GO:0061008,GO:0061844,GO:0065007,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090150,GO:0090304,GO:0097159,GO:0097421,GO:0098542,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1903311,GO:1903312,GO:1904569,GO:1904571,GO:1990904,GO:2000112
Descriptionstructural constituent of ribosome
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Cross References
External references for this mRNA
DatabaseAccession
GO0022625
GO0055085
GO0006412
GO0003735
GO0009620
GO0009506
GO0009507
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft154_23aEsuBft154_23aEctocarpus subulatus male Bft15bgeneScaffold_340 492854..496181 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft154_23a-0001-exonagat-exon-109645Ectocarpus subulatus male Bft15bexonScaffold_340 492854..492940 +
EsuBft154_23a-0001-exonEsuBft154_23a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_340 495170..496181 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft154_23a-0001-exonagat-five_prime_utr-3118Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_340 492854..492919 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft154_23a-0001-cdsEsuBft154_23a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_340 492920..492940 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft154_23a-0001-exonagat-three_prime_utr-4809Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_340 495485..496181 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft154_23a-0001EsuBft154_23Ectocarpus subulatus male Bft15bpolypeptideScaffold_340 492920..495484 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft154_23a-0001 ID=EsuBft154_23a-0001|Name=EsuBft154_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1099bp|location=Sequence derived from alignment at Scaffold_340:492854..496181+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGCTCGCTCAGTTGGTCTGCCCCTGCTGCTCTCCACCCCCCAACTCCCTG
CAAACCCTCAGCAAGAATGGCGCCCGGGAAGAAATCGAAGAAGGCGATCG
AGTCGATGAACGCCCGGCTCCAGCTGGTGATGAAGTCGGGCAAGGCCTCG
CTGGGCTACAAGAGCACCATCAAGTCCATGCGCAGCACCCGCGCCAAGAT
GGTGCTCATCTCCAACAACTGCCCGCCCCTCCGCAAGTCGGAGATCGAGT
ACTTCGCCATGCTCGCCAAGTGCGCCGTGCACCACTACACGGGCTCCAAC
ACCGACCTCGGCACCGCCTGCGGGAAGTACTTCCGCGTGTCGGTACTCTC
CATCACCGACGCCGGCGACTCCGACATCCTTCGCCAGGGCGCGGAAGCGT
AAGATGGACGGAAGACCGCCGGCCTGCCTGCCTGCCTTAGCTTTTTCTTC
ATCATTCGTGTGCAGTAGACGGAGATACCTCGCTGTGTTTTTGACTGCAT
GGCTCGTCTTGTGAAGAGAAAGGGGGCGTGGTTGCGCGTGTGTGCACGTT
GGTAGGGCCCGTTGTGGCAGAAATGGCCGGGTTTTCTCTACCGAAATCGC
CACATGCTGTCGCAAGATTCCACTTGTTGACGTGTGGACATTTTTTAATG
TCTCGTTAGAGAAGGAGGTATGTAGGGATCACCTCTTTCTTCATCTTCAG
TATTGGTGGGGCGGGAGATGCGGTTGCCGGGCAGCAGACAACTAACTCTG
CGGGGTTCTGAGTTGAAAACTAAATGGATCTTGTGGACCAAATTTTTTTT
TTCGTCTTCCGTCTTCATTTGATCGCGTTATAACGCGTACGTGCATGCGT
CGTGATCGATCGACGGTGTTCGGGCGTGATTCTTGCGCGACGGTAACGCG
CACACATGCCATTGAGGCCGTCGGCCTACGGACGACCACACTGCTGTTGT
CGTTGGCGCGGACGCGACCGGTAGTCCTAATTACCGGATGTTGGAAAATC
TGTTCGCATGTATCGTGTGACGGGTTTTCTTTCCGAACGGAACATGAGCG
CAAACGCCGCTGTTATTGGTCGGTCGTCCCCATCACGCATATTTAGCTC
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protein sequence of EsuBft154_23a-0001

>EsuBft154_23 ID=EsuBft154_23|Name=EsuBft154_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=111bp
MAPGKKSKKAIESMNARLQLVMKSGKASLGYKSTIKSMRSTRAKMVLISN
NCPPLRKSEIEYFAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDAG
DSDILRQGAEA
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mRNA from alignment at Scaffold_340:492854..496181+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft154_23a-0001 ID=EsuBft154_23a-0001|Name=EsuBft154_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3328bp|location=Sequence derived from alignment at Scaffold_340:492854..496181+ (Ectocarpus subulatus male Bft15b)
CGCTCGCTCAGTTGGTCTGCCCCTGCTGCTCTCCACCCCCCAACTCCCTG
CAAACCCTCAGCAAGAATGGCGCCCGGGAAGAAATCGGTGGGTGACAATC
CTGCCTTTGAGGGTCGACGGCACGTCGCTGGAGACTAACGCCAGCTTCGC
GCGACACATACACGACGCGGTGCAATTATTTCGTGGCTGTGGCGTGTTTT
TTGAGAGTCAAGTGCCTAGGCGATCCGTGATGAGCCTCCCCATGCACGCC
TAGCCCTCTGTCTCTCGCTCGCTCTCCCGAGTGGATAGAGGATGGCGACT
GGGGAGTGCCCATCTCGGGGATAGGCTAATGTAGCTGCTGGTCTCAACTC
CTCAAGTACCCGAGAGATCCACGTTTTCTCTAGAGAACGCGGGGACGGGG
TCTGCCGGCCTCTATCAATACAGCGCGGTTGGTGCTCTGACAACGTGGGT
CGTGATTGCTTTTGTCTGTCTAGAGGTTGGTTGGTGTCACCTTCCAGGTT
TTTTTTCGTGCGTGATGTCAGGTTTACTGTCGTTTTGCTCACCTGTCTAC
ATATCTCATGGGAAGCGGGCTGGTTTTCTTTCTCGTGTGTTTCTGTGGCT
CCTAACCAACGCGGCGGAATTACTGTAGACAACGTAAGATACCACCCCCC
CTTGGACCGATTGTCAAGGCCCGATTCGTCCACAGTCGAAAAGAGTAGCA
GCGCGGACAACGGCGGCGTTAAAAAAAATCGCCTCGCTTTGAGCTTGCCG
GAAACGTATCATGTCTGTATCCTCTTCGTCGTGGAGCAGCGGAGCTTTGG
AAATTGGTCCTGGGGGGCGTAGTACTTGAGGCACCCATTGTACGATCCGT
CTGTCGGTGTGTCCTGGTTGATCTCTGCATGGTCGGTTGTCTGTCCCCAG
ATCTCCCTTGTCTGTCCCCAGATCTCCCTCGTTCCTTCCACCACGCCGTA
AACAGATGCTTTCCGCACCGTTGCTCATATGAAGGCTACGAGCCGGCTTG
GGTGTACACCACGTGATGGCTCTTTCGTGCCGTGTGCCGACAGACACAAG
CGTAAACAAACCAGTGTGGCGTGTTTTTTGCCCATGGCTCAGTGGTGTTG
TAATGGGTGGCTCTCACAGACCCTATCTCAGCTTTAGCCACCCATGTGCC
TACCTACCTACATTTGCACCTGTTTGCACTTACGGATAAGAGGGCTTGGT
AGAACAGACCCCCGTGTGCCTATTTGGTATGCTGCCCGTCAGTATCGTCC
ATCAATTATCTGATACCTGGCACGGACGACGATGAATTCTGCCTCATGAT
GCCGGTAACCCCAAAACTCCACTGGTCGAAGGGCTCGACATCCCGGACAC
GTGTGCTTCGTTTTACTGGAGGTTGGGGTGTTCTCTCGCCATCATGAAAC
GATACATGGGCGCTCTGCGTTCGCCGCGCCTATCGTCATCCTCTTGTGTA
GCTGTTTGTGGCGTGCATGCGCAAAAGCGCTAGGTGACCCTCCGCAAGCA
CGCGAGGAACAGCCACCCGGCAGACGAGGATGCTGGCGGCGATACGCAAA
ATGTACATGTATCGTTCCATGACGGCGTTGATGTACCCCCAACCTCCGGT
ACCTGCACGTCCAGTGTCCACTTGGAGGTTGTGAGGAATGCCCACCCCTT
GCGCGTGCATCCATGAAGGAAATCATAAAATCAATGTGCCTGAAATCATG
CTGGAATTGAGCACGACGAACTCCATACTCCCAAGCGCTAGGAACACAAA
CCCTCGAGGTCTAATCTTGACCTAGATTTTCGTTCGCCTGGCAGGTCGTG
TGCGCGATTTGCATTGGGCGTTTCCAAGTATTCGTGTGACTGCCTGCCGT
CCTCGTGCTCGAGCTGAGTAAAATATGAGAAAATGTTTGGGCCCACGACC
CGATGAGAAGCGTGGATAAATCATGTGGAGTACCCCCGCTGCATCGAATT
TCCCAGTCGACCTTTTACCAAAAAAAAAGTTACGAGAGTTGTTCTCCACG
CTACACCCCAAACTTTGTTCTTTGTTTATGTGCTCCTCCCGCCTATGTCA
CCTATCCTCGCGCGGGCACTGCGTGTCCTCTTGACGAAGTGTGTTTTTCC
AAGCAGAGCCAATAGTTAGGTTCTACTCCTACAGAGTACCTGTCCATAAT
CGAACGTCCTAGATGAAACACGCCGGTCCGTGAGCCGGCATTTTTTTTTC
CTCCACGTGTATGCGCAGTACTTCTGCTGTGTAACATCTGCTGACTTATG
TCTTTGCCCTTGTTCACTCCCTGACGTCCCATCTTCCTCTCGCTCTTAAT
TAATTTTTTCGAGCAGAAGAAGGCGATCGAGTCGATGAACGCCCGGCTCC
AGCTGGTGATGAAGTCGGGCAAGGCCTCGCTGGGCTACAAGAGCACCATC
AAGTCCATGCGCAGCACCCGCGCCAAGATGGTGCTCATCTCCAACAACTG
CCCGCCCCTCCGCAAGTCGGAGATCGAGTACTTCGCCATGCTCGCCAAGT
GCGCCGTGCACCACTACACGGGCTCCAACACCGACCTCGGCACCGCCTGC
GGGAAGTACTTCCGCGTGTCGGTACTCTCCATCACCGACGCCGGCGACTC
CGACATCCTTCGCCAGGGCGCGGAAGCGTAAGATGGACGGAAGACCGCCG
GCCTGCCTGCCTGCCTTAGCTTTTTCTTCATCATTCGTGTGCAGTAGACG
GAGATACCTCGCTGTGTTTTTGACTGCATGGCTCGTCTTGTGAAGAGAAA
GGGGGCGTGGTTGCGCGTGTGTGCACGTTGGTAGGGCCCGTTGTGGCAGA
AATGGCCGGGTTTTCTCTACCGAAATCGCCACATGCTGTCGCAAGATTCC
ACTTGTTGACGTGTGGACATTTTTTAATGTCTCGTTAGAGAAGGAGGTAT
GTAGGGATCACCTCTTTCTTCATCTTCAGTATTGGTGGGGCGGGAGATGC
GGTTGCCGGGCAGCAGACAACTAACTCTGCGGGGTTCTGAGTTGAAAACT
AAATGGATCTTGTGGACCAAATTTTTTTTTTCGTCTTCCGTCTTCATTTG
ATCGCGTTATAACGCGTACGTGCATGCGTCGTGATCGATCGACGGTGTTC
GGGCGTGATTCTTGCGCGACGGTAACGCGCACACATGCCATTGAGGCCGT
CGGCCTACGGACGACCACACTGCTGTTGTCGTTGGCGCGGACGCGACCGG
TAGTCCTAATTACCGGATGTTGGAAAATCTGTTCGCATGTATCGTGTGAC
GGGTTTTCTTTCCGAACGGAACATGAGCGCAAACGCCGCTGTTATTGGTC
GGTCGTCCCCATCACGCATATTTAGCTC
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Coding sequence (CDS) from alignment at Scaffold_340:492854..496181+

>EsuBft154_23a-0001 ID=EsuBft154_23a-0001|Name=EsuBft154_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=336bp|location=Sequence derived from alignment at Scaffold_340:492854..496181+ (Ectocarpus subulatus male Bft15b)
ATGGCGCCCGGGAAGAAATCGAAGAAGGCGATCGAGTCGATGAACGCCCG
GCTCCAGCTGGTGATGAAGTCGGGCAAGGCCTCGCTGGGCTACAAGAGCA
CCATCAAGTCCATGCGCAGCACCCGCGCCAAGATGGTGCTCATCTCCAAC
AACTGCCCGCCCCTCCGCAAGTCGGAGATCGAGTACTTCGCCATGCTCGC
CAAGTGCGCCGTGCACCACTACACGGGCTCCAACACCGACCTCGGCACCG
CCTGCGGGAAGTACTTCCGCGTGTCGGTACTCTCCATCACCGACGCCGGC
GACTCCGACATCCTTCGCCAGGGCGCGGAAGCGTAA
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