EsuBft154_21a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft154_21a-0001
Unique NameEsuBft154_21a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_340contigScaffold_340:515661..518683 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LN86
ProteomeIdEsuBft154_21
Protein domainsPR01228
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl2759|Eukaryota
Length78
Hectar predicted targeting categoryother localisation
Evalue4.37e-24
EggNOG OGs2D052@1|root,2SCUE@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft154_21aEsuBft154_21aEctocarpus subulatus male Bft15bgeneScaffold_340 515661..518683 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft154_21a-0001-exonagat-exon-109630Ectocarpus subulatus male Bft15bexonScaffold_340 515661..516209 -
EsuBft154_21a-0001-exonagat-exon-109629Ectocarpus subulatus male Bft15bexonScaffold_340 516992..517114 -
EsuBft154_21a-0001-exonagat-exon-109631Ectocarpus subulatus male Bft15bexonScaffold_340 517962..518049 -
EsuBft154_21a-0001-exonEsuBft154_21a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_340 518655..518683 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft154_21a-0001-cdsEsuBft154_21a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_340 515661..516209 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft154_21a-0001EsuBft154_21Ectocarpus subulatus male Bft15bpolypeptideScaffold_340 515661..518683 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft154_21a-0001 ID=EsuBft154_21a-0001|Name=EsuBft154_21a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=789bp|location=Sequence derived from alignment at Scaffold_340:515661..518683- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTGACGAAGACCCTTCGGAACGCAGGCGAAAGTGCGACCGTGATGA
GTGCGAGCAGATGGCGACACACGGGTTCATCCTCCCCCGTCTTTGTGGGC
AGCACTCGGAGGCACGGATGCTGCGTATCGTACCCGCCGACGTCGAGTCC
GGAGACGAGTGGGGTTCCGACGCGGAAGCGGACGCCCGCGACTACGGGCG
ATTCCGCCGCATCGCCGGGGCTGACCCGGAAACGATCCAGAATGCCCTCA
AGCTGTACCCCCCGCGCAACCCGGAGACACGCGCCCGCATCTACGACGGC
CTCGGCTTGGAACTCCCTGGCGATGTCAGCCGGGGCCGAAGCAGCAGCAC
CGGCGGCGGCGGCGGCGGCGACAACGGTGGTGGTAACGGCCGAATTGCAG
GAGCGGCGGGGAGTTCGATATCCTCTGGAGGCGTTGGCGGAATTCGGGGC
GGTGGGTCCGGCAGCGGCGGCGGCGGCGGCGGTGTCAATCGCGGCGGTAG
GGGGAGCGGCGGCGGCGGCGGCGGAAAGGACGGGGTCGACGGCGACGGGG
TCAGGGCGGGGGCGGGAGCGGCGGCGAAGGGCGGCGGCGGGGGCGGCAGC
ACCGCAGTGCCCCCGCGCCTGCCGACGTACAGCACGACCGGCACCCAGCC
GCCGCGGTTCGGGAAGCAGGACAAGGCGTTGCTCGCGACTCACGGCGCGA
AGCAACCCAAGGGCAAGCACCCCGGGTACATCATCACGCTCTACGGGAAG
AAGGTGCGCGGCGTGGTTGGTTGGTTTTCCCAAGGCTAG
back to top

protein sequence of EsuBft154_21a-0001

>EsuBft154_21 ID=EsuBft154_21|Name=EsuBft154_21a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=262bp
MLDEDPSERRRKCDRDECEQMATHGFILPRLCGQHSEARMLRIVPADVES
GDEWGSDAEADARDYGRFRRIAGADPETIQNALKLYPPRNPETRARIYDG
LGLELPGDVSRGRSSSTGGGGGGDNGGGNGRIAGAAGSSISSGGVGGIRG
GGSGSGGGGGGVNRGGRGSGGGGGGKDGVDGDGVRAGAGAAAKGGGGGGS
TAVPPRLPTYSTTGTQPPRFGKQDKALLATHGAKQPKGKHPGYIITLYGK
KVRGVVGWFSQG
back to top

mRNA from alignment at Scaffold_340:515661..518683-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft154_21a-0001 ID=EsuBft154_21a-0001|Name=EsuBft154_21a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3023bp|location=Sequence derived from alignment at Scaffold_340:515661..518683- (Ectocarpus subulatus male Bft15b)
ATGCTTGACGAAGACCCTTCGGAACGCAGGTAGAATATATATTTTCGTGG
AGTGTGTGTGTATGTGTTTGTTTCTTGAGGTAGCATTTACCGCCTTATAC
GGCTGACCAACGGAAATATTTGTCAATCCTCAGTGCGACTGAATTTCTTA
AGCCCGTAAATCTTGTGTGTCTTTATTGTGAGCATCGAGTACACTATCCG
GCTGACCAATGAAATGACGCACGTCTCAGTGTGGATGAAAACAGAAAATG
CTTTTAACGGCCATTTTATGGGACGCCGTCAGGGAGGCATCAAGGGTGTG
ACGTTTCCTTTGTCGGCCGTGCCTTTTGTTGCACAACTCTCCTTTTTTGT
TTGTCTTTCGTTGGCTTGTCCTTTGGTACATCCATTTCCTTTTTTTCTCA
TTTTTTGTTTTTCTTTGTCCTTGTGTTGGCTTGTCTTTTGTTCTTACGGT
CGAGTTTTGTTTTTCTCCTTTCATCTTGTTTGTCTTTGTGTTGGCTTGTC
TTTTGTTACAAAATTCTCTTTTTTTCTGTGCTTTTGTCGTGTGTTTGTCC
GTTGGTAACATGCGGCGTTATTTTTGTGTTGTTATCATAGTCTCATCCCG
TCTTGTGGTTGGTTTGTTCCTTTGTTCCTTTCAGGCGAAAGTGCGACCGT
GATGAGTGCGAGCAGATGGCGACACACGGGTTCATCCTCCCCCGTCTTTG
TGGGCAGCACTCGGAGGCACGGGTACGTGGAGCGGGGGACCGCGGCACTC
GTGTACACACGTGCCGTAGTCGGTATGGTAGACGATGGACCTCAGGAGGG
GACTGGTTATCATCCGTACCCGCACGTGGCGGTGGTAGGTTTTCTGTCAG
TCGAGGTGTAGCGGGAAAACACAAGGGAAACCATAAAATTGTGTGTGTTG
TGTTGTTTTCCTGGGGGCGGGGCGGGGGAAGGAGAAACATGACATGTTCT
CCACGCTGGGGGCCCTCAAGTCTGTAGGAGAACATGCGACATGGTGTACG
TCGGTTCTGGTGGCTGCTGAATAACCAGAGGTGTGTGTGTGTGTGTGTGT
CGGCGGGGGATGGGATTGCTGTGGCGAAGACAGAGGGCGACGGGGGCTCC
GCAGTGTGCGGCGGCATGATGCGTTCGTGGCACGAGAGGCGGCGGGGCGG
GTGAGGAGAGTTGGAAGGGGTTCATGTGCATGTTGATGTTGTTGTTGCTG
TTTTCCGTTAGGAAACTTTGATGGCAAGTTTCCCTCCCCCCAGGGCACAA
TGCTTATGCTTCCACCTCCCTCTCGAGGACACCACGTCAATGGTCTTAAC
CGGTAAGGCATGCAAAACGTGAGCACGCCCCCTCCCTCCCCCTCGCCAAA
TGAAACTAGACGACCCTTCACCAGTCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCCCTCCCCAATG
AACTGGCATGACACAACAGATGCTGCGTATCGTACCCGCCGACGTCGAGT
CCGGAGACGAGTGGGGTTCCGACGCGGAAGCGGACGCCCGCGACTACGGG
CGATTCCGCCGCATCGCCGGGGCTGACCCGGAAACGATCCAGGTACGTAT
CAATAGGTACACACGTGTACAAACCCACGCACCACGCTCGTTGTGTCACA
CATCCACGCTCACCCGGTGTTGACAACACCGGGCCGTGTCGCACATCACA
CATACCCCTTGTATGGATAACAGCGGTCGTATGCATGCAATACGGGCGTC
GTGTCCGCTATGACGCACGCCTAAACAAGAAAAGAGTAGTGTGAGGAAAA
CAGCCCCGCATTTTGTGAATTTAGTTTCACAGATTGTCACACGCACACCC
TGGTGGACAAGAGCCCCACAGCAACGATAACAAGGTCGTCACGTCCACTT
GGACGCACGCCCAATTTGAATTTTATGGAACCACAGGCCCGAATCGTGGT
GCTTACCCGTTGCTCACGGTGCTCTGTAAGGCTTGCACCCGAACTCACGC
ACCGTTGTTTTGGGCGTGTGTTGTGCACAACACGCGCTTGCCGTCCTGCT
GTGCTGGAACACGGAGAATATCGGTTCTCTGGTCTCGACGAAGCTGTACA
AGTGCTATGTTTCGCACGGCTTCGTGCCCTCGGTCCCCGGTTGGGTTGGT
TGGTTGTTATTCCAGAGCAGAAGAAGGGCTCGATACGAGGGTAGAGGAGC
GTTTTTTTTTACTTTGTGCAGCATGCTACATTATCGTCAACAACACAATA
CCAACAGCAACGACCACAACCGCAACCTACCACAACAAACAACATTTAAC
AGTGATAGCCTGCCGCAACCAACAATGCAATAAACTCTTTCCGCTCGCTC
TTTTTTTGCGTCGCCGACCCTCAGAATGCCCTCAAGCTGTACCCCCCGCG
CAACCCGGAGACACGCGCCCGCATCTACGACGGCCTCGGCTTGGAACTCC
CTGGCGATGTCAGCCGGGGCCGAAGCAGCAGCACCGGCGGCGGCGGCGGC
GGCGACAACGGTGGTGGTAACGGCCGAATTGCAGGAGCGGCGGGGAGTTC
GATATCCTCTGGAGGCGTTGGCGGAATTCGGGGCGGTGGGTCCGGCAGCG
GCGGCGGCGGCGGCGGTGTCAATCGCGGCGGTAGGGGGAGCGGCGGCGGC
GGCGGCGGAAAGGACGGGGTCGACGGCGACGGGGTCAGGGCGGGGGCGGG
AGCGGCGGCGAAGGGCGGCGGCGGGGGCGGCAGCACCGCAGTGCCCCCGC
GCCTGCCGACGTACAGCACGACCGGCACCCAGCCGCCGCGGTTCGGGAAG
CAGGACAAGGCGTTGCTCGCGACTCACGGCGCGAAGCAACCCAAGGGCAA
GCACCCCGGGTACATCATCACGCTCTACGGGAAGAAGGTGCGCGGCGTGG
TTGGTTGGTTTTCCCAAGGCTAG
back to top

Coding sequence (CDS) from alignment at Scaffold_340:515661..518683-

>EsuBft154_21a-0001 ID=EsuBft154_21a-0001|Name=EsuBft154_21a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=789bp|location=Sequence derived from alignment at Scaffold_340:515661..518683- (Ectocarpus subulatus male Bft15b)
ATGCTTGACGAAGACCCTTCGGAACGCAGGCGAAAGTGCGACCGTGATGA
GTGCGAGCAGATGGCGACACACGGGTTCATCCTCCCCCGTCTTTGTGGGC
AGCACTCGGAGGCACGGATGCTGCGTATCGTACCCGCCGACGTCGAGTCC
GGAGACGAGTGGGGTTCCGACGCGGAAGCGGACGCCCGCGACTACGGGCG
ATTCCGCCGCATCGCCGGGGCTGACCCGGAAACGATCCAGAATGCCCTCA
AGCTGTACCCCCCGCGCAACCCGGAGACACGCGCCCGCATCTACGACGGC
CTCGGCTTGGAACTCCCTGGCGATGTCAGCCGGGGCCGAAGCAGCAGCAC
CGGCGGCGGCGGCGGCGGCGACAACGGTGGTGGTAACGGCCGAATTGCAG
GAGCGGCGGGGAGTTCGATATCCTCTGGAGGCGTTGGCGGAATTCGGGGC
GGTGGGTCCGGCAGCGGCGGCGGCGGCGGCGGTGTCAATCGCGGCGGTAG
GGGGAGCGGCGGCGGCGGCGGCGGAAAGGACGGGGTCGACGGCGACGGGG
TCAGGGCGGGGGCGGGAGCGGCGGCGAAGGGCGGCGGCGGGGGCGGCAGC
ACCGCAGTGCCCCCGCGCCTGCCGACGTACAGCACGACCGGCACCCAGCC
GCCGCGGTTCGGGAAGCAGGACAAGGCGTTGCTCGCGACTCACGGCGCGA
AGCAACCCAAGGGCAAGCACCCCGGGTACATCATCACGCTCTACGGGAAG
AAGGTGCGCGGCGTGGTTGGTTGGTTTTCCCAAGGCTAG
back to top