EsuBft154_19a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft154_19a-0001
Unique NameEsuBft154_19a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_340contigScaffold_340:531793..533095 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft154_19
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length84
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft154_19aEsuBft154_19aEctocarpus subulatus male Bft15bgeneScaffold_340 531793..533095 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft154_19a-0001EsuBft154_19Ectocarpus subulatus male Bft15bpolypeptideScaffold_340 531793..531960 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft154_19a-0001-exonagat-exon-109622Ectocarpus subulatus male Bft15bexonScaffold_340 531793..532066 +
EsuBft154_19a-0001-exonEsuBft154_19a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_340 532356..532664 +
EsuBft154_19a-0001-exonagat-exon-109621Ectocarpus subulatus male Bft15bexonScaffold_340 532831..533095 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft154_19a-0001-cdsEsuBft154_19a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_340 531793..531960 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft154_19a-0001-exonagat-three_prime_utr-4805Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_340 531961..532066 +
EsuBft154_19a-0001-exonagat-three_prime_utr-4806Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_340 532356..532664 +
EsuBft154_19a-0001-exonagat-three_prime_utr-4807Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_340 532831..533095 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft154_19a-0001 ID=EsuBft154_19a-0001|Name=EsuBft154_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=848bp|location=Sequence derived from alignment at Scaffold_340:531793..533095+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGCCGCAGCATCCAAGGAAAAATCTACCGACGCACATACAGAACG
AACCACTCGTACCCCACCCATCCCCTTCACGCATGAAGGCACACCACCCA
CAGCCTTAGTGCCAAAAACGAGCCATGGAACGAAACACGCTTTACATCAC
GTACAGATAGTAGACTAGTACTGTACGAAAATATCGCACGCGCTACAAAA
CAATTTTGGCACGGAAAATCAAAGCACCCCTCGAAGCCTGTCAGCCTCAG
CACTACACTACGTCTGCTGCAACCGTAGTCTTGGATACACGTCTGCTTGG
TTGCCCCCGCCCCGTGGGCACTCATCCAAGCTCGCTTAGCCTCGCGGAGG
TGGTAAGATGCTTCTGGCATGTCGCACTTCTCGGCAATGTCCTCGAGTTC
ACAAAGTGTTGTGCTACGTTAGCGTACGGCGGCGGAGGCGAGGCCGCTGC
CGCTAACGACTGCTGTTCCGCTTCGCCTTGCTCCACCAGATCGACGTCTT
TGGCCCCCGAAGAGCCGCTCTTCTCTGGCTGCGCCCCAGCAGTCCCCGCG
CCTGAAGTCTCGCGCTCGCGGGAGGCCGCACAGGTGTAGCAGATGCGGTG
CACCTCAGTGGTGCCAAGCGGGTCCACCACACCACAGATACCATGGAGGT
ACTGCCCGCAGACGCCTCTGCATTTGTGTATTGTGAAATGAGGCGGGCCC
GACGTGTCGTCGGGCATAGTGCAGCGGTCGCCCGCTGCGCAGGGCATGGT
GTCTGCAGCTGTGTCTGTGTTGAGAGCTGTGGTGTGTGATGGCTACGTGA
CGTGGCCTCCAGCAGCTCGATGTAAGAGAAAATCTCAGAAATATGCCA
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protein sequence of EsuBft154_19a-0001

>EsuBft154_19 ID=EsuBft154_19|Name=EsuBft154_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=55bp
MDAAASKEKSTDAHTERTTRTPPIPFTHEGTPPTALVPKTSHGTKHALHH
VQIVD
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mRNA from alignment at Scaffold_340:531793..533095+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft154_19a-0001 ID=EsuBft154_19a-0001|Name=EsuBft154_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1303bp|location=Sequence derived from alignment at Scaffold_340:531793..533095+ (Ectocarpus subulatus male Bft15b)
ATGGATGCCGCAGCATCCAAGGAAAAATCTACCGACGCACATACAGAACG
AACCACTCGTACCCCACCCATCCCCTTCACGCATGAAGGCACACCACCCA
CAGCCTTAGTGCCAAAAACGAGCCATGGAACGAAACACGCTTTACATCAC
GTACAGATAGTAGACTAGTACTGTACGAAAATATCGCACGCGCTACAAAA
CAATTTTGGCACGGAAAATCAAAGCACCCCTCGAAGCCTGTCAGCCTCAG
CACTACACTACGTCTGCTGCAACCGTTGAAGGTAGTCTTGGATACACGTC
TGCTTGGTTGCCCCCGCCCCGTGGGCACTCATCCAAGCTCGCTTAGCCTC
GCGGAGGTGGTAAGATGCTTCTGGCATGTCGCACTTCTCGGCAATGTCCT
CGAGTTCACAAGGTGTTGTGCTACGTTAGCGTACGGCGGCGGAGGCGAGG
CCGCTGCCGCTAACGACTGCTGTTNTACAAAACAATTTTGGCACGGAAAA
TCAAAGCACCCCTCGAAGCCTGTCAGCCTCAGCACTACACTACGTCTGCT
GCAACCGTTGAAGGTAGTCTTGGATACACGTCTGCTTGGTTGCCCCCGCC
CCGTGGGCACTCATCCAAGCTCGCTTAGCCTCGCGGAGGTGGTAAGATGC
TTCTGGCATGTCGCACTTCTCGGCAATGTCCTCGAGTTCACAAAGTGTTG
TGCTACGTTAGCGTACGGCGGCGGAGGCGAGGCCGCTGCCGCTAACGACT
GCTGTTCCGCTTCGCCTTGCTCCACCAGATCGACGTCTTTGGCCCCCGAA
GAGCCGCTCTTCTCTGGCTGCGCCCCAGCAGTCCCCGCGCCTGAAGTCTC
GCGCTCGCGGGAGGCCGCACAGGTGTAGCAGATGCGGTGCACCTCAGTGG
TGCCAAGCGGGTCCACCACACCACAGATACCATGGAGGTACTGCCCGCAG
ACGCCTCTGCATTTGTGTATTGTGAAATGAGGCGGGCCCGANAGCAGTCC
CCGCGCCTGAAGTCTCGCGCTCGCGGGAGGCCGCACAGGTGTAGCAGATG
CGGTGCACCTCAGTGGTGCCAAGCGGGTCCACCACACCACAGATACCATG
GAGGTACTGCCCGCAGACGCCTCTGCATTTGTGTATTGTGAAATGAGGCG
GGCCCGACGTGTCGTCGGGCATAGTGCAGCGGTCGCCCGCTGCGCAGGGC
ATGGTGTCTGCAGCTGTGTCTGTGTTGAGAGCTGTGGTGTGTGATGGCTA
CGTGACGTGGCCTCCAGCAGCTCGATGTAAGAGAAAATCTCAGAAATATG
CCA
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Coding sequence (CDS) from alignment at Scaffold_340:531793..533095+

>EsuBft154_19a-0001 ID=EsuBft154_19a-0001|Name=EsuBft154_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=168bp|location=Sequence derived from alignment at Scaffold_340:531793..533095+ (Ectocarpus subulatus male Bft15b)
ATGGATGCCGCAGCATCCAAGGAAAAATCTACCGACGCACATACAGAACG
AACCACTCGTACCCCACCCATCCCCTTCACGCATGAAGGCACACCACCCA
CAGCCTTAGTGCCAAAAACGAGCCATGGAACGAAACACGCTTTACATCAC
GTACAGATAGTAGACTAG
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