EsuBft154_17a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft154_17a-0001
Unique Name	EsuBft154_17a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_340	contig	Scaffold_340:548471..549835 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	6500.XP_005110414.1
ProteomeId	EsuBft154_17
Protein domains	SSF56672
Protein domains	Coil
Protein domains	PTHR19446
Protein domains	IPR000477
Owner	apollo_admin@sb-roscoff.fr
Note	retrovirus-related pol polyprotein from type-1 retrotransposable element r2 os:nasonia vitripen [Automatic annotation]
Nb exon	1
Max annot lvl	33208\|Metazoa
Length	1365
Evalue	5.02e-27
EggNOG OGs	KOG1075@1\|root,KOG1075@2759\|Eukaryota,39TZY@33154\|Opisthokonta,3BI15@33208\|Metazoa,3E41I@33213\|Bilateria
Date last modified	2016-06-14
Date creation	2016-06-14
Description	Reverse transcriptase (RNA-dependent DNA polymerase)
COG category	S

Cross References

External references for this mRNA


Database	Accession
GO	0006259
GO	0003824

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft154_17a	EsuBft154_17a	Ectocarpus subulatus male Bft15b	gene	Scaffold_340 548471..549835 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft154_17a-0001-exon	EsuBft154_17a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_340 548471..549835 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft154_17a-0001-cds	EsuBft154_17a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_340 548471..549778 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft154_17a-0001-exon	agat-five_prime_utr-3116	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_340 549779..549835 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft154_17a-0001	EsuBft154_17	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_340 548471..549778 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_340:548471..549835-
coding sequence from alignment at Scaffold_340:548471..549835-

spliced messenger RNA

>EsuBft154_17a-0001 ID=EsuBft154_17a-0001|Name=EsuBft154_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1365bp|location=Sequence derived from alignment at Scaffold_340:548471..549835- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGCTGTTTCGTGCGCCGCCTCCAGGAGCTGGGGCGGAGAAGGAAAATACC
GCTCTACATGTGCTTCGCCGACCTGAAGAAGGCGCATGATTCGGTGGACC
GAGAGATGCTATGGAAGGTGCTGGCCAGGGCCGGGATTCCCGCGAAGCTG
ATCGAAGTCATCCGCCAATTCCACGATGGAATGCGGGCCCGGGTGCGCAT
GGACGACGGAGAACTATCGGACTGGTTCTTCGTGACACAGGGCGTGCGAC
AAGGATGTGTGCTGTCCCCACTGCTGTTCAACACCTTCTTCGCGGCGGTC
CTCGAGGTCGCTGTCATCCGATTCAGCGAGGATGACGTTGTTCTGCGGAG
CCTGGTTTGCTTGGAGGAGGGGAAGGCGGAAGCGCGGGGGGGGGAGGAGA
CACCCCTTGACCGAGTACGGAGGGCAGTATGGGGGATGCTGTATGCCGAT
GATGCCGGCGTCGTATCGAGGTCTGCAGAAGGACTGGCGAGAATGATGGC
CATCATCGTTGAGGTGTTCGGGGAGTTCGGGCTAACGGTGTCGGAGAAGA
AGACGGAGACGCTCCTGATGCGCGCAAAGGACAAGCCGACTACAACATCA
CAGCCCGCCCCGCCTCCACCGCTGACCATCGAAGCCGCGGGACAGAAATA
CGCCCAGACGACCGAGTTCCGGTACCTCGGTGGCCTCGTCAACGAACATG
GCGACCTCACCCGGGAGATCAACTACAAGAGCAGAGGAGTGTGGGCGTGC
CTCAGGCAATATGGCTGGGAGCTCTTCGACAGACCGAAAGCGCCATTCCG
ACTCAAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAACAGAACTGGCCGAAGT
GTGTGCTCGACGACCTGAAGGCATTCGGGGCCGACCACGGATCTACGAAA
ACCGATCCATACTGCCTCGGAATCCCGGTACCGAAAGATACGGCCCCGAA
GTTAAAGTGGACGGAAGCCGCGAAGGTCGAGGGGGGAGTACCCTGGCATG
CGGCGGTGCTGCAGGGAGCTGAGAGGTTCATGACCTCCTGGCACGAGAAC
GAAGAAGAGGCCAGCCGACAACGGGCGCTCAAACGAAACCACAAGCCAAC
AACCAATGGGGCGGGNTCTAATGGGGCAGGAGGGGGGCAGGAGACGGACG
AGGTGGCGAGGGAAGAAAGCAAACGAGAAGAGACGGACCGAGTGGCGCGA
TACGTGCCGGATTGA

protein sequence of EsuBft154_17a-0001

>EsuBft154_17 ID=EsuBft154_17|Name=EsuBft154_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=435bp
MCFADLKKAHDSVDREMLWKVLARAGIPAKLIEVIRQFHDGMRARVRMDD
GELSDWFFVTQGVRQGCVLSPLLFNTFFAAVLEVAVIRFSEDDVVLRSLV
CLEEGKAEARGGEETPLDRVRRAVWGMLYADDAGVVSRSAEGLARMMAII
VEVFGEFGLTVSEKKTETLLMRAKDKPTTTSQPAPPPPLTIEAAGQKYAQ
TTEFRYLGGLVNEHGDLTREINYKSRGVWACLRQYGWELFDRPKAPFRLK
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXEQNWPKCVLDDLKAFGADHGSTKTDPYCLGIPVPKDTAPKLK
WTEAAKVEGGVPWHAAVLQGAERFMTSWHENEEEASRQRALKRNHKPTTN
GAGSNGAGGGQETDEVAREESKREETDRVARYVPD

mRNA from alignment at Scaffold_340:548471..549835-

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft154_17a-0001 ID=EsuBft154_17a-0001|Name=EsuBft154_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1365bp|location=Sequence derived from alignment at Scaffold_340:548471..549835- (Ectocarpus subulatus male Bft15b)
TGCTGTTTCGTGCGCCGCCTCCAGGAGCTGGGGCGGAGAAGGAAAATACC
GCTCTACATGTGCTTCGCCGACCTGAAGAAGGCGCATGATTCGGTGGACC
GAGAGATGCTATGGAAGGTGCTGGCCAGGGCCGGGATTCCCGCGAAGCTG
ATCGAAGTCATCCGCCAATTCCACGATGGAATGCGGGCCCGGGTGCGCAT
GGACGACGGAGAACTATCGGACTGGTTCTTCGTGACACAGGGCGTGCGAC
AAGGATGTGTGCTGTCCCCACTGCTGTTCAACACCTTCTTCGCGGCGGTC
CTCGAGGTCGCTGTCATCCGATTCAGCGAGGATGACGTTGTTCTGCGGAG
CCTGGTTTGCTTGGAGGAGGGGAAGGCGGAAGCGCGGGGGGGGGAGGAGA
CACCCCTTGACCGAGTACGGAGGGCAGTATGGGGGATGCTGTATGCCGAT
GATGCCGGCGTCGTATCGAGGTCTGCAGAAGGACTGGCGAGAATGATGGC
CATCATCGTTGAGGTGTTCGGGGAGTTCGGGCTAACGGTGTCGGAGAAGA
AGACGGAGACGCTCCTGATGCGCGCAAAGGACAAGCCGACTACAACATCA
CAGCCCGCCCCGCCTCCACCGCTGACCATCGAAGCCGCGGGACAGAAATA
CGCCCAGACGACCGAGTTCCGGTACCTCGGTGGCCTCGTCAACGAACATG
GCGACCTCACCCGGGAGATCAACTACAAGAGCAGAGGAGTGTGGGCGTGC
CTCAGGCAATATGGCTGGGAGCTCTTCGACAGACCGAAAGCGCCATTCCG
ACTCAAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAACAGAACTGGCCGAAGT
GTGTGCTCGACGACCTGAAGGCATTCGGGGCCGACCACGGATCTACGAAA
ACCGATCCATACTGCCTCGGAATCCCGGTACCGAAAGATACGGCCCCGAA
GTTAAAGTGGACGGAAGCCGCGAAGGTCGAGGGGGGAGTACCCTGGCATG
CGGCGGTGCTGCAGGGAGCTGAGAGGTTCATGACCTCCTGGCACGAGAAC
GAAGAAGAGGCCAGCCGACAACGGGCGCTCAAACGAAACCACAAGCCAAC
AACCAATGGGGCGGGNTCTAATGGGGCAGGAGGGGGGCAGGAGACGGACG
AGGTGGCGAGGGAAGAAAGCAAACGAGAAGAGACGGACCGAGTGGCGCGA
TACGTGCCGGATTGA

Coding sequence (CDS) from alignment at Scaffold_340:548471..549835-

>EsuBft154_17a-0001 ID=EsuBft154_17a-0001|Name=EsuBft154_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1308bp|location=Sequence derived from alignment at Scaffold_340:548471..549835- (Ectocarpus subulatus male Bft15b)
ATGTGCTTCGCCGACCTGAAGAAGGCGCATGATTCGGTGGACCGAGAGAT
GCTATGGAAGGTGCTGGCCAGGGCCGGGATTCCCGCGAAGCTGATCGAAG
TCATCCGCCAATTCCACGATGGAATGCGGGCCCGGGTGCGCATGGACGAC
GGAGAACTATCGGACTGGTTCTTCGTGACACAGGGCGTGCGACAAGGATG
TGTGCTGTCCCCACTGCTGTTCAACACCTTCTTCGCGGCGGTCCTCGAGG
TCGCTGTCATCCGATTCAGCGAGGATGACGTTGTTCTGCGGAGCCTGGTT
TGCTTGGAGGAGGGGAAGGCGGAAGCGCGGGGGGGGGAGGAGACACCCCT
TGACCGAGTACGGAGGGCAGTATGGGGGATGCTGTATGCCGATGATGCCG
GCGTCGTATCGAGGTCTGCAGAAGGACTGGCGAGAATGATGGCCATCATC
GTTGAGGTGTTCGGGGAGTTCGGGCTAACGGTGTCGGAGAAGAAGACGGA
GACGCTCCTGATGCGCGCAAAGGACAAGCCGACTACAACATCACAGCCCG
CCCCGCCTCCACCGCTGACCATCGAAGCCGCGGGACAGAAATACGCCCAG
ACGACCGAGTTCCGGTACCTCGGTGGCCTCGTCAACGAACATGGCGACCT
CACCCGGGAGATCAACTACAAGAGCAGAGGAGTGTGGGCGTGCCTCAGGC
AATATGGCTGGGAGCTCTTCGACAGACCGAAAGCGCCATTCCGACTCAAG
ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNGGAACAGAACTGGCCGAAGTGTGTGCT
CGACGACCTGAAGGCATTCGGGGCCGACCACGGATCTACGAAAACCGATC
CATACTGCCTCGGAATCCCGGTACCGAAAGATACGGCCCCGAAGTTAAAG
TGGACGGAAGCCGCGAAGGTCGAGGGGGGAGTACCCTGGCATGCGGCGGT
GCTGCAGGGAGCTGAGAGGTTCATGACCTCCTGGCACGAGAACGAAGAAG
AGGCCAGCCGACAACGGGCGCTCAAACGAAACCACAAGCCAACAACCAAT
GGGGCGGGNTCTAATGGGGCAGGAGGGGGGCAGGAGACGGACGAGGTGGC
GAGGGAAGAAAGCAAACGAGAAGAGACGGACCGAGTGGCGCGATACGTGC
CGGATTGA