EsuBft154_16a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft154_16a-0001
Unique Name	EsuBft154_16a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_340	contig	Scaffold_340:550139..552263 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft154_16
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	212
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft154_16a	EsuBft154_16a	Ectocarpus subulatus male Bft15b	gene	Scaffold_340 550139..552263 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft154_16a-0001-exon	EsuBft154_16a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_340 550139..552263 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft154_16a-0001-exon	agat-five_prime_utr-3115	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_340 550139..550223 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft154_16a-0001-cds	EsuBft154_16a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_340 550224..550610 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft154_16a-0001-exon	agat-three_prime_utr-4804	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_340 550611..552263 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft154_16a-0001	EsuBft154_16	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_340 550224..550610 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_340:550139..552263+
coding sequence from alignment at Scaffold_340:550139..552263+

spliced messenger RNA

>EsuBft154_16a-0001 ID=EsuBft154_16a-0001|Name=EsuBft154_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2125bp|location=Sequence derived from alignment at Scaffold_340:550139..552263+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CACCCTTCTTGTACAGCACCTTGATGGTTGCATCCTTCCACTCTCGCGGG
ATATCTCCTCCGTTCCACACTTTGACGAGGATCGTATGGAGGTGTCCCAG
GACGAAGGGTTCGTCGTCATCGATCTTGAGCAACTCGGCAGGGAGGGAGT
CATGGCCGGGTACCTTCCAGCTCTTGAGGTATTTTGTTGCCCGTGCCACC
TCCTCGAGGCCTGGCACCTCTCCCAACCGTCGAGTGTCACGTGTCGCTGG
CCGCTGCGTCACTCGTCGATGATGTCTGGGTTCTGGGTGGGGGATTTGGT
GTTGAGTAGGGCGCTGAAGAATCTCGCCCACCGCTGGAGGATGTCGTCCC
TGTTCCGGAGCAACACGCCGTTCTCATCCGCGATGAACTGCTGTCCCCCC
GGTTGTCTCCCGCTGAGGTCCACTGATCTCTTGAGGTGTTGGTACAGTCC
TCGCATGTCGCGATCTTTGTAGATTTCTTCGAGCTCAGTCACATATCCGT
CCAGGTGGGCATAAATGCCCGTTTCGACTGCTGTAGCCACTCCCTTACAC
GCTGCTTTGAGAATCTTCCACGTCGCTGAGTTCCAGTTGCCCCTCATCGC
CCGGCGCGCTTCCCGACGTTTGGTAAGGGCCTGCTCCAGCGCTGCTCGCG
TCTCTGGGGTCTCACACCACTCCTGCGTGCGGCGTCTCCGCGGTTCCTCC
CCCAGGGTCGTCCGCGCTGCGTCGAGGAGAGCATTGGTAAAGTCGGTCGC
CAATTCCGCGGCGGTGGTTGTTCGCTCGTCCAGTCGTGTGTCGAGGTTGA
GGAGGAGCCGATTAGTCACCGCACACCGTGCTGCTTCGAACTGCAATTCC
CGTCGGTTGAATTGCTTCTGTTTCGGTTTAGTCCGGACTGCACGGTTGTG
GGCAAGCCTGCCACCGAGGTTGACGGTGGCTACTACCATGTTGTGGCTTG
AGTCTGCTTTGACTGGGCGAACCGGCTGGGGGATGACGACCACGTTAGAT
ACTCGGCCGTGATGTGCCTGCCTTGTCAGGATGTTGTCTAGGCGCTTGCA
ATCGTTTCCCGACACACCGTTGTATGTGTGCCATATTCCGCCCTTGCGTG
TCTCAAAGAACGTGTTCGTGAGAGCTAGCCTGTTTTCCGTTGCGAAGTTC
AACAGCAGCATGCCATTGTCGTTGAGCTCATCACGCCCGTACATTCCTAT
TACCCTTCCGTCCCCTCCGTCCAACCTATCTCCCGTCCGCGCGTTGGCGT
CCATTAGGACATACACAAATTATTTGGAAGGGTTCCTCCTCACGAGACCG
TCAAGTTTTCCCCAGAACACGCGCTTGTTGCCGGCGGTTGAAGGTTCGGT
TGGAGCATACGCGGCTACGAAGTTGACCGCTCCACGGTGGCCTGCCAACA
GAAACCTCATGGCCATAAGGCGTTCGTCGATAAACTCCGTAGTGAACGTG
GATGTCTTGCACAGTGACTCTCTGACGGCTATCCCCACACCATGGACTCC
ACCAGTCTCCGTGCCACAGCAGAACACCCGGAAACCCGCTGCTGCAAATT
TTGTTCAACCTGCCCTCCGTGTCTCCTACATTCCTACCACCGATATGTCT
TGTCTCGCTGCCTCGTGTAGAACGCTGTAGGTTCGCCCGTATCCATTGGC
CCCGTTTACAGCCAAAGTTCGCACATTCCAGGTTGCTACCCTAAGAAGTT
GATCCTGCTGTCTCTTTCGCGCGGCGCGCGCTGCTCTCTTAGCTAGCCTG
CGCGTCGCCTGACCCCTCCTTTTCCTCCATCTTCCCCTCTTTTTTTTGTT
TTTTTGCTATTTTCTTGCGAACACTCGGGCTGACGTGATAGTTACCCCGG
TTTTTGCCTTGTTCCCCGTAGAGTTGTATTCTTGTCCCGGAGCGGTGTGG
CCCTCCATCTCTGGACTCTCTCCTTTCCTCTCTCTGGGGCATACCCCCAC
GGCGTGCGGTCACCCCGCCACCCTTACCGTGCTCTCTGCTGCTGCATAGC
CCCGGTGTCCAAGCCGGGGCGTTAGGATCCAGTCTCATGTTGCAGCTACC
AAAGCTGGCGGTTCACGAGCTACCCCGATCTCACGACAGCAGTAGCTCCC
AACCGCCGAACTCAGGATCCCCCTC

protein sequence of EsuBft154_16a-0001

>EsuBft154_16 ID=EsuBft154_16|Name=EsuBft154_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=128bp
MEVSQDEGFVVIDLEQLGREGVMAGYLPALEVFCCPCHLLEAWHLSQPSS
VTCRWPLRHSSMMSGFWVGDLVLSRALKNLAHRWRMSSLFRSNTPFSSAM
NCCPPGCLPLRSTDLLRCWYSPRMSRSL

mRNA from alignment at Scaffold_340:550139..552263+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft154_16a-0001 ID=EsuBft154_16a-0001|Name=EsuBft154_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2125bp|location=Sequence derived from alignment at Scaffold_340:550139..552263+ (Ectocarpus subulatus male Bft15b)
CACCCTTCTTGTACAGCACCTTGATGGTTGCATCCTTCCACTCTCGCGGG
ATATCTCCTCCGTTCCACACTTTGACGAGGATCGTATGGAGGTGTCCCAG
GACGAAGGGTTCGTCGTCATCGATCTTGAGCAACTCGGCAGGGAGGGAGT
CATGGCCGGGTACCTTCCAGCTCTTGAGGTATTTTGTTGCCCGTGCCACC
TCCTCGAGGCCTGGCACCTCTCCCAACCGTCGAGTGTCACGTGTCGCTGG
CCGCTGCGTCACTCGTCGATGATGTCTGGGTTCTGGGTGGGGGATTTGGT
GTTGAGTAGGGCGCTGAAGAATCTCGCCCACCGCTGGAGGATGTCGTCCC
TGTTCCGGAGCAACACGCCGTTCTCATCCGCGATGAACTGCTGTCCCCCC
GGTTGTCTCCCGCTGAGGTCCACTGATCTCTTGAGGTGTTGGTACAGTCC
TCGCATGTCGCGATCTTTGTAGATTTCTTCGAGCTCAGTCACATATCCGT
CCAGGTGGGCATAAATGCCCGTTTCGACTGCTGTAGCCACTCCCTTACAC
GCTGCTTTGAGAATCTTCCACGTCGCTGAGTTCCAGTTGCCCCTCATCGC
CCGGCGCGCTTCCCGACGTTTGGTAAGGGCCTGCTCCAGCGCTGCTCGCG
TCTCTGGGGTCTCACACCACTCCTGCGTGCGGCGTCTCCGCGGTTCCTCC
CCCAGGGTCGTCCGCGCTGCGTCGAGGAGAGCATTGGTAAAGTCGGTCGC
CAATTCCGCGGCGGTGGTTGTTCGCTCGTCCAGTCGTGTGTCGAGGTTGA
GGAGGAGCCGATTAGTCACCGCACACCGTGCTGCTTCGAACTGCAATTCC
CGTCGGTTGAATTGCTTCTGTTTCGGTTTAGTCCGGACTGCACGGTTGTG
GGCAAGCCTGCCACCGAGGTTGACGGTGGCTACTACCATGTTGTGGCTTG
AGTCTGCTTTGACTGGGCGAACCGGCTGGGGGATGACGACCACGTTAGAT
ACTCGGCCGTGATGTGCCTGCCTTGTCAGGATGTTGTCTAGGCGCTTGCA
ATCGTTTCCCGACACACCGTTGTATGTGTGCCATATTCCGCCCTTGCGTG
TCTCAAAGAACGTGTTCGTGAGAGCTAGCCTGTTTTCCGTTGCGAAGTTC
AACAGCAGCATGCCATTGTCGTTGAGCTCATCACGCCCGTACATTCCTAT
TACCCTTCCGTCCCCTCCGTCCAACCTATCTCCCGTCCGCGCGTTGGCGT
CCATTAGGACATACACAAATTATTTGGAAGGGTTCCTCCTCACGAGACCG
TCAAGTTTTCCCCAGAACACGCGCTTGTTGCCGGCGGTTGAAGGTTCGGT
TGGAGCATACGCGGCTACGAAGTTGACCGCTCCACGGTGGCCTGCCAACA
GAAACCTCATGGCCATAAGGCGTTCGTCGATAAACTCCGTAGTGAACGTG
GATGTCTTGCACAGTGACTCTCTGACGGCTATCCCCACACCATGGACTCC
ACCAGTCTCCGTGCCACAGCAGAACACCCGGAAACCCGCTGCTGCAAATT
TTGTTCAACCTGCCCTCCGTGTCTCCTACATTCCTACCACCGATATGTCT
TGTCTCGCTGCCTCGTGTAGAACGCTGTAGGTTCGCCCGTATCCATTGGC
CCCGTTTACAGCCAAAGTTCGCACATTCCAGGTTGCTACCCTAAGAAGTT
GATCCTGCTGTCTCTTTCGCGCGGCGCGCGCTGCTCTCTTAGCTAGCCTG
CGCGTCGCCTGACCCCTCCTTTTCCTCCATCTTCCCCTCTTTTTTTTGTT
TTTTTGCTATTTTCTTGCGAACACTCGGGCTGACGTGATAGTTACCCCGG
TTTTTGCCTTGTTCCCCGTAGAGTTGTATTCTTGTCCCGGAGCGGTGTGG
CCCTCCATCTCTGGACTCTCTCCTTTCCTCTCTCTGGGGCATACCCCCAC
GGCGTGCGGTCACCCCGCCACCCTTACCGTGCTCTCTGCTGCTGCATAGC
CCCGGTGTCCAAGCCGGGGCGTTAGGATCCAGTCTCATGTTGCAGCTACC
AAAGCTGGCGGTTCACGAGCTACCCCGATCTCACGACAGCAGTAGCTCCC
AACCGCCGAACTCAGGATCCCCCTC

Coding sequence (CDS) from alignment at Scaffold_340:550139..552263+

>EsuBft154_16a-0001 ID=EsuBft154_16a-0001|Name=EsuBft154_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=387bp|location=Sequence derived from alignment at Scaffold_340:550139..552263+ (Ectocarpus subulatus male Bft15b)
ATGGAGGTGTCCCAGGACGAAGGGTTCGTCGTCATCGATCTTGAGCAACT
CGGCAGGGAGGGAGTCATGGCCGGGTACCTTCCAGCTCTTGAGGTATTTT
GTTGCCCGTGCCACCTCCTCGAGGCCTGGCACCTCTCCCAACCGTCGAGT
GTCACGTGTCGCTGGCCGCTGCGTCACTCGTCGATGATGTCTGGGTTCTG
GGTGGGGGATTTGGTGTTGAGTAGGGCGCTGAAGAATCTCGCCCACCGCT
GGAGGATGTCGTCCCTGTTCCGGAGCAACACGCCGTTCTCATCCGCGATG
AACTGCTGTCCCCCCGGTTGTCTCCCGCTGAGGTCCACTGATCTCTTGAG
GTGTTGGTACAGTCCTCGCATGTCGCGATCTTTGTAG