EsuBft154_15a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft154_15a-0001
Unique NameEsuBft154_15a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_340contigScaffold_340:553038..555166 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G064
ProteomeIdEsuBft154_15
Protein domainsIPR007265
Ownerapollo_admin@sb-roscoff.fr
Noteconserved oligomeric golgi complex subunit 3 os:homo sapiens gn:cog3 pe:1 sv:3 [Automatic annotation]
Nb exon4
Max annot lvl2759|Eukaryota
Length362
Hectar predicted targeting categoryother localisation
Evalue7.03e-59
EggNOG OGsKOG2604@1|root,KOG2604@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameCOG3
KEGG koko:K20290
GOsGO:0000003,GO:0000139,GO:0000280,GO:0000910,GO:0003006,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0005802,GO:0005829,GO:0005886,GO:0006403,GO:0006464,GO:0006486,GO:0006807,GO:0006810,GO:0006888,GO:0006890,GO:0006891,GO:0006996,GO:0007030,GO:0007049,GO:0007112,GO:0007140,GO:0007275,GO:0007276,GO:0007548,GO:0008104,GO:0008150,GO:0008152,GO:0008406,GO:0008565,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009653,GO:0009887,GO:0009987,GO:0010256,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016043,GO:0016192,GO:0017119,GO:0019538,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0030334,GO:0031090,GO:0031647,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0032588,GO:0032879,GO:0032991,GO:0033036,GO:0033206,GO:0033227,GO:0033365,GO:0034613,GO:0034645,GO:0035262,GO:0036211,GO:0040012,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045137,GO:0045184,GO:0046907,GO:0048193,GO:0048232,GO:0048285,GO:0048513,GO:0048608,GO:0048609,GO:0048731,GO:0048856,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050821,GO:0051179,GO:0051234,GO:0051236,GO:0051270,GO:0051301,GO:0051321,GO:0051641,GO:0051649,GO:0051704,GO:0061458,GO:0061640,GO:0065007,GO:0065008,GO:0070085,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0098588,GO:0098791,GO:0099023,GO:0140013,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903046,GO:2000145
Descriptionintra-Golgi vesicle-mediated transport
COG categoryS
BRITEko00000,ko04131
Cross References
External references for this mRNA
DatabaseAccession
GO0006886
GO0005801
GO0048193
GO0044431
GO0003333
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft154_15aEsuBft154_15aEctocarpus subulatus male Bft15bgeneScaffold_340 553038..555166 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft154_15a-0001EsuBft154_15Ectocarpus subulatus male Bft15bpolypeptideScaffold_340 553070..555166 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft154_15a-0001-exonagat-exon-109612Ectocarpus subulatus male Bft15bexonScaffold_340 553038..553090 +
EsuBft154_15a-0001-exonagat-exon-109613Ectocarpus subulatus male Bft15bexonScaffold_340 553492..553704 +
EsuBft154_15a-0001-exonEsuBft154_15a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_340 554801..554890 +
EsuBft154_15a-0001-exonagat-exon-109611Ectocarpus subulatus male Bft15bexonScaffold_340 555161..555166 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft154_15a-0001-exonagat-five_prime_utr-3114Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_340 553038..553069 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft154_15a-0001-cdsEsuBft154_15a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_340 553070..553090 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft154_15a-0001 ID=EsuBft154_15a-0001|Name=EsuBft154_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=362bp|location=Sequence derived from alignment at Scaffold_340:553038..555166+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGGTGCAAGACTCTCAAGAAAGGTTGATCTACATGGCCACCAAAGTTATC
CAGGACGACATCGCAAGCTTCCGACCCACGCCCGAAGACCTCGATTACCC
CGGCATGCTCCTACGAGCAGCGAGGGGCGGTGGCACCAGCGACGGCTTAG
TCAACGCTAGGACAGGGGCGGGGGATCAGCCGTCGCCTTCCTCTCCTCCT
TCTTCTACTAAGGGGAGCGCGCCGGCTTACACGACGTGGTACCCACCGCT
GCGATCGACGCTTCAGGTGCTCAGCAAGGTGTACCGCGCGGTGGACATGG
GAGTCTTCGAGGACCTGGCCCAGCTGTCGGTGGCGGCGTGCGCGGAGTCT
TTGAAGGGATGA
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protein sequence of EsuBft154_15a-0001

>EsuBft154_15 ID=EsuBft154_15|Name=EsuBft154_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=109bp
MATKVIQDDIASFRPTPEDLDYPGMLLRAARGGGTSDGLVNARTGAGDQP
SPSSPPSSTKGSAPAYTTWYPPLRSTLQVLSKVYRAVDMGVFEDLAQLSV
AACAESLKG
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mRNA from alignment at Scaffold_340:553038..555166+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft154_15a-0001 ID=EsuBft154_15a-0001|Name=EsuBft154_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2129bp|location=Sequence derived from alignment at Scaffold_340:553038..555166+ (Ectocarpus subulatus male Bft15b)
TGGTGCAAGACTCTCAAGAAAGGTTGATCTACATGGCCACCAAAGTTATC
CAGGTGAAGGAAGGCACAGCAAGCAGTGACGTACAGTAGTAGCGAGGAAC
GAACGGAATCGGTGTCCCATCCACCTGGGGTGAATTTGTTCAGGAAGGCC
GACCCCGTTTCCCACGTTTGCTGGAAGCGTTTTCTCGGCCGTGGAACATG
CTGGGGTTACGTTTAGCGCGCACCACTGCAGGTTGTAGAAGGAGCGAGCG
GTGTTTGATCGTGCGTTGTAGATTGGTGTTGCTGAGCGAGTGCTGTGTCT
TTCCTGACGCGCGTCTTGATGTGACGACGACCCCGCCCCACCCGTTGATT
CTGCCGCGAGACTTGCGCCGCTTTGTCTGTCTCTCTCTCGCCGTGTTCCG
TTTCGCTCTACCGCACGCCGGCTTCATATGCACCATGACAACAACCGCAC
GTAGGACGACATCGCAAGCTTCCGACCCACGCCCGAAGACCTCGATTACC
CCGGCATGCTCCTACGAGCAGCGAGGGGCGGTGGCACCAGCGACGGCTTA
GTCAACGCTAGGACAGGGGCGGGGGATCAGCCGTCGCCTTCCTCTCCTCC
TTCTTCTACTAAGGGGAGCGCGCCGGCTTACACGACGTGGTACCCACCGC
TGCGATCGACGCTTCAGGTGCTGCTGGATGCGCGTGGTTGTGTGTGGGTA
TTACCTTGCCGTAGTGTGTGTTGGTATTACCGTACCGTAGTATGTGTTGG
TATTACCGTAGTGTGTGTTGGTATTACCGTACCGTAGTGTGTGTGGGTAT
TGCCGTGCCGTAGTGTGTGTTGGTATTACCGTACCGTAGTATGTGTTGGT
ATTACCGTAGTGTGTGTTGGTATTACCGTACCGTAGTGTGTGTTGGTATT
GCCGTACCGTAGTGTGTGTTGGTATTACCGTACCGTAGTGTGTGTTGGTG
TTGAGAGTTTTCGTCACTTTTTCGTTGTTGGCGAAATCGTCGTTGATGTT
GCTTGTTGGAGGTGTTGAGAAACCGTCGCTGTCGTCTAAATTGGTGTTGA
AATCCTCGGTGTTCTTGTTGCTTGTTGACGGTGCTGAGAATCCGTCGCTG
TTGCCTGTAGCATGTAGTGTTGCACTCTTCGTTGTTGACGTTGTTGCTGT
GGGTGTTAGCGATGAATGGAACGCTCGTCTTTATCCCGGCCATCTTGACT
ACTGTCTTAACTGACTGTCTTCGACTTGACCCAGCCTCGAAGACACCTCC
ACAGAACCACGCCCACGGAGAACAAGGTTTTCCAGGAGAGATTGCCCTTT
CAATACCGCCTTTAAGAAGAACACACACACGTACTGACGTCTTTTCATCG
GTCAGCCGGTTAGCGCGGTCGATTCTAATAAGGAATACACACACGCACCT
GAGAAAAGCAACGCCAACTACTGCCACCACCACCACCACCCCAAAGGGGT
GTATGCCCCTCCACCTGCCCTTCGGTTGAATCAGACGGCGGGGATGCTGA
TGTAGAGGGGCATGTATCCGCTATCCCCGCATATCCTCGGGATGTCAAAA
GTGTTGGGAAACCCCCCGCGTGATGTGTATTTTTTTTCTTTTTTTTCGTC
TTCCAGGTAGGCGACAACGAGTAGGTTTTGACAAGAATGTTCTCCGTTAA
TACATGTGGGTTGAATGAGACAGTGTGGGATGTGACCTCCGTCGATGTAT
GTGGGTTGTGTGATGCGACGGTGCGGACTGTGACACGGTGCGAAAATTTG
TGATGCGATGCAGGTGCTCAGCAAGGTGTACCGCGCGGTGGACATGGGAG
TCTTCGAGGACCTGGCCCAGCTGTCGGTGGCGGCGTGCGCGGAGTCTTTG
AAGGTGATGAGATGGTTGACGTGGTTCACTCATTCACTAATGACTGTGGT
TGGGTCTCCGATGGGATACCGGGTTTTCCGGCGTTCCGGTACACTAGAGA
AACAGAGGCTCAACTATGATTTTTCCACGAAGATTATTAATAGTAAAACG
GAGATCGTTTACTGAACTCTAGTGTTGAAAAATGGGGATCGTGCATACGA
CACTTAGACTCTAGTAGAAACCCCCTTCGACGAAAACCCGGAAGGCACAT
CGCTCCGTTCCGGCATTATGCAGGGATGA
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Coding sequence (CDS) from alignment at Scaffold_340:553038..555166+

>EsuBft154_15a-0001 ID=EsuBft154_15a-0001|Name=EsuBft154_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=330bp|location=Sequence derived from alignment at Scaffold_340:553038..555166+ (Ectocarpus subulatus male Bft15b)
ATGGCCACCAAAGTTATCCAGGACGACATCGCAAGCTTCCGACCCACGCC
CGAAGACCTCGATTACCCCGGCATGCTCCTACGAGCAGCGAGGGGCGGTG
GCACCAGCGACGGCTTAGTCAACGCTAGGACAGGGGCGGGGGATCAGCCG
TCGCCTTCCTCTCCTCCTTCTTCTACTAAGGGGAGCGCGCCGGCTTACAC
GACGTGGTACCCACCGCTGCGATCGACGCTTCAGGTGCTCAGCAAGGTGT
ACCGCGCGGTGGACATGGGAGTCTTCGAGGACCTGGCCCAGCTGTCGGTG
GCGGCGTGCGCGGAGTCTTTGAAGGGATGA
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