EsuBft154_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft154_12a-0001
Unique NameEsuBft154_12a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_340contigScaffold_340:584051..584851 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft154_12
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length27
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft154_12aEsuBft154_12aEctocarpus subulatus male Bft15bgeneScaffold_340 584051..584851 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft154_12a-0001-exonagat-exon-109595Ectocarpus subulatus male Bft15bexonScaffold_340 584051..584302 -
EsuBft154_12a-0001-exonEsuBft154_12a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_340 584833..584851 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft154_12a-0001-cdsEsuBft154_12a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_340 584051..584245 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft154_12a-0001-exonagat-five_prime_utr-3111Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_340 584246..584302 -
EsuBft154_12a-0001-exonagat-five_prime_utr-3112Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_340 584833..584851 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft154_12a-0001EsuBft154_12Ectocarpus subulatus male Bft15bpolypeptideScaffold_340 584051..584245 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft154_12a-0001 ID=EsuBft154_12a-0001|Name=EsuBft154_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=271bp|location=Sequence derived from alignment at Scaffold_340:584051..584851- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
NNNNNNNNNNNNNNNNNNGCTCGGCCCGGAGGCTCCTTGGCCCGTCGAAC
CAGCACATTCAAGCCTGGTCCTTGTGATGCCCGCCCCGTGTCGGAGAAAA
CCAGGGCTCGAGTTGTACGATGCGCTCCTTCTACGCCTACCCACAGGCTT
GTGGCGATCTTGCCTGCCGCCTCCGCCGGCGGCCTCCAGCTCTTTAGCAG
ACTACTTCATTTCCCGCACTTCTCATGCGGGGAAAGGCGGTGACCGCCTC
CTTGACAAGGTCGGACCTTAA
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protein sequence of EsuBft154_12a-0001

>EsuBft154_12 ID=EsuBft154_12|Name=EsuBft154_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=64bp
MPAPCRRKPGLELYDALLLRLPTGLWRSCLPPPPAASSSLADYFISRTSH
AGKGGDRLLDKVGP
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mRNA from alignment at Scaffold_340:584051..584851-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft154_12a-0001 ID=EsuBft154_12a-0001|Name=EsuBft154_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=801bp|location=Sequence derived from alignment at Scaffold_340:584051..584851- (Ectocarpus subulatus male Bft15b)
NNNNNNNNNNNNNNNNNNGGTGGAAGCCCCCCCCCCCCCCCCCCCCCCCG
TATCCTTGATCCTCTAGGCGAGCCCATCTTGTACACGTATGCTACGGGCG
CCACCAGTTTCCCTTGCGACCACACGTCGACCGTGTCTTGCTTGCTTTGG
GTGTCTCTGGCACCTCGCCCTCATATAAGGAGCTAGAATCAGACCTCCAC
TTCAATCGTGCATGCAACCCTACAACACTTGCCCTATCGATGCCGCTTCA
GGCGGGTTTACAATTCATTTTTCTTGCTGTACTTTCTCCACCCCAGGCTC
AACCTAGCAGGGACCTACCTCATGCGCTACGCAGGGACCTCGAAAGTCAG
CAATCGAATTCCATAATGACATCTACCAAATTCCTTTATTATTGCGCATT
GGTAACATTCTTGAGAGGGACGACACTGGGGGGGGCATACTTGTAGTGTA
CACATGATTGTTATTGTTGTTGCTATTATAGATACTAATCCTGTTGTTGT
TATTGGTCGTTGTGCTTGTGCTCGTGCTTGTAATTTTCAATTCCGACAGC
TCGGCCCGGAGGCTCCTTGGCCCGTCGAACCAGCACATTCAAGCCTGGTC
CTTGTGATGCCCGCCCCGTGTCGGAGAAAACCAGGGCTCGAGTTGTACGA
TGCGCTCCTTCTACGCCTACCCACAGGCTTGTGGCGATCTTGCCTGCCGC
CTCCGCCGGCGGCCTCCAGCTCTTTAGCAGACTACTTCATTTCCCGCACT
TCTCATGCGGGGAAAGGCGGTGACCGCCTCCTTGACAAGGTCGGACCTTA
A
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Coding sequence (CDS) from alignment at Scaffold_340:584051..584851-

>EsuBft154_12a-0001 ID=EsuBft154_12a-0001|Name=EsuBft154_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=195bp|location=Sequence derived from alignment at Scaffold_340:584051..584851- (Ectocarpus subulatus male Bft15b)
ATGCCCGCCCCGTGTCGGAGAAAACCAGGGCTCGAGTTGTACGATGCGCT
CCTTCTACGCCTACCCACAGGCTTGTGGCGATCTTGCCTGCCGCCTCCGC
CGGCGGCCTCCAGCTCTTTAGCAGACTACTTCATTTCCCGCACTTCTCAT
GCGGGGAAAGGCGGTGACCGCCTCCTTGACAAGGTCGGACCTTAA
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