EsuBft154_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft154_11a-0001
Unique Name	EsuBft154_11a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_340	contig	Scaffold_340:586989..587997 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft154_11
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	100
Hectar predicted targeting category	no signal peptide or anchor
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft154_11a	EsuBft154_11a	Ectocarpus subulatus male Bft15b	gene	Scaffold_340 586989..587997 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft154_11a-0001-exon	EsuBft154_11a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_340 586989..587997 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft154_11a-0001-cds	EsuBft154_11a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_340 586989..587156 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft154_11a-0001-exon	agat-three_prime_utr-4802	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_340 587157..587997 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft154_11a-0001	EsuBft154_11	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_340 586989..587156 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_340:586989..587997+
coding sequence from alignment at Scaffold_340:586989..587997+

spliced messenger RNA

>EsuBft154_11a-0001 ID=EsuBft154_11a-0001|Name=EsuBft154_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1009bp|location=Sequence derived from alignment at Scaffold_340:586989..587997+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACCCACCACCACCACCACCACCGACAACGACATCAACGACGTCGAC
GACGGCAACAGTTGACGACGACAACGCCATCACCATTGACGAGAACAAGA
AGAACAAGAACGGCAATGATAGCAACCGTAAAACATCCGTCCCCTGTCAA
GTCACCTACCAGTTTTAGGTACTGACATTGAACTCACTCTGTCGCACGAG
ACACGTACTATCTCCAGCACTTGATCCCGCGGGCAAGAACATGCCAAAAT
TACGTTTGTCTAGGCTGGCCACGCGCAGTCTAAGTCTCAATTTGGGATGA
ACACGTCCAACAACTCGCTTGTTTGACACTGGGGGAGACAAATAAGTATC
TCGGCAAAAACAGTAGCGTCAACACCATTGCCGCGACTAGCCTTCGTACG
GCATGTTAGGAGTGCAGCACTCATGACGCCTCAACACTGAATTGCCCGTT
CAACGCCTTTGCAAGGTCAACGCCTTTGCAAGGTCAACGCCCCACGCCCC
CTCCCCCCATTTCCTTTACACAGACCCAAAGCTAGCACAATGCACAAAGC
TTCACTCAGTCGCCGTGCTGAGGGTTTTTACCATCTGTCTATTTATGGGT
TCTTTCTTGTATCCAGATGAATATTGCCAAAATATTGGCTGAAAAATCCA
GACGGTTGGCGTGTCCCGTGTTCACCGGTGAGTACCGCTGCGGTGGTTCT
GGGAGCCAGGGGACTTGTCTCGCGATAAAAAATCCGCTTTTGACACGACT
TCGTCCTTTCGTACGAAATCGATGCTTGCTTCCGATGACGTATGACGATG
CTCAAGAATCCACGGTTGGTTTCTCGCTTGAACCGGTACATGGGCAACCA
GGCCAATGAGCACGTCCAAGGTTTCCGAGGAAAGGGATTTGGTCTCGATG
ACCCTGACGTCGCTCCGTCCGTTGCTGCCGGCGCGGCGTGGAGGGCGCCG
TGAGACAGGCCGCCATCGCGAATTGTTTCCTAGCAAGGAGCAACAAAGGC
GCTACTGTT

protein sequence of EsuBft154_11a-0001

>EsuBft154_11 ID=EsuBft154_11|Name=EsuBft154_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=55bp
MHPPPPPPPTTTSTTSTTATVDDDNAITIDENKKNKNGNDSNRKTSVPCQ
VTYQF

mRNA from alignment at Scaffold_340:586989..587997+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft154_11a-0001 ID=EsuBft154_11a-0001|Name=EsuBft154_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1009bp|location=Sequence derived from alignment at Scaffold_340:586989..587997+ (Ectocarpus subulatus male Bft15b)
ATGCACCCACCACCACCACCACCACCGACAACGACATCAACGACGTCGAC
GACGGCAACAGTTGACGACGACAACGCCATCACCATTGACGAGAACAAGA
AGAACAAGAACGGCAATGATAGCAACCGTAAAACATCCGTCCCCTGTCAA
GTCACCTACCAGTTTTAGGTACTGACATTGAACTCACTCTGTCGCACGAG
ACACGTACTATCTCCAGCACTTGATCCCGCGGGCAAGAACATGCCAAAAT
TACGTTTGTCTAGGCTGGCCACGCGCAGTCTAAGTCTCAATTTGGGATGA
ACACGTCCAACAACTCGCTTGTTTGACACTGGGGGAGACAAATAAGTATC
TCGGCAAAAACAGTAGCGTCAACACCATTGCCGCGACTAGCCTTCGTACG
GCATGTTAGGAGTGCAGCACTCATGACGCCTCAACACTGAATTGCCCGTT
CAACGCCTTTGCAAGGTCAACGCCTTTGCAAGGTCAACGCCCCACGCCCC
CTCCCCCCATTTCCTTTACACAGACCCAAAGCTAGCACAATGCACAAAGC
TTCACTCAGTCGCCGTGCTGAGGGTTTTTACCATCTGTCTATTTATGGGT
TCTTTCTTGTATCCAGATGAATATTGCCAAAATATTGGCTGAAAAATCCA
GACGGTTGGCGTGTCCCGTGTTCACCGGTGAGTACCGCTGCGGTGGTTCT
GGGAGCCAGGGGACTTGTCTCGCGATAAAAAATCCGCTTTTGACACGACT
TCGTCCTTTCGTACGAAATCGATGCTTGCTTCCGATGACGTATGACGATG
CTCAAGAATCCACGGTTGGTTTCTCGCTTGAACCGGTACATGGGCAACCA
GGCCAATGAGCACGTCCAAGGTTTCCGAGGAAAGGGATTTGGTCTCGATG
ACCCTGACGTCGCTCCGTCCGTTGCTGCCGGCGCGGCGTGGAGGGCGCCG
TGAGACAGGCCGCCATCGCGAATTGTTTCCTAGCAAGGAGCAACAAAGGC
GCTACTGTT

Coding sequence (CDS) from alignment at Scaffold_340:586989..587997+

>EsuBft154_11a-0001 ID=EsuBft154_11a-0001|Name=EsuBft154_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=168bp|location=Sequence derived from alignment at Scaffold_340:586989..587997+ (Ectocarpus subulatus male Bft15b)
ATGCACCCACCACCACCACCACCACCGACAACGACATCAACGACGTCGAC
GACGGCAACAGTTGACGACGACAACGCCATCACCATTGACGAGAACAAGA
AGAACAAGAACGGCAATGATAGCAACCGTAAAACATCCGTCCCCTGTCAA
GTCACCTACCAGTTTTAG