EsuBft1546_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1546_8a-0001
Unique NameEsuBft1546_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_170contigScaffold_170:90399..92314 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1546_8
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length143
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1546_8aEsuBft1546_8aEctocarpus subulatus male Bft15bgeneScaffold_170 90399..92314 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1546_8a-0001EsuBft1546_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_170 90399..91428 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1546_8a-0001-exonagat-exon-14986Ectocarpus subulatus male Bft15bexonScaffold_170 90399..90507 +
EsuBft1546_8a-0001-exonEsuBft1546_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_170 90550..90757 +
EsuBft1546_8a-0001-exonagat-exon-14984Ectocarpus subulatus male Bft15bexonScaffold_170 90846..91634 +
EsuBft1546_8a-0001-exonagat-exon-14985Ectocarpus subulatus male Bft15bexonScaffold_170 91983..92314 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1546_8a-0001-cdsEsuBft1546_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_170 90399..90507 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1546_8a-0001-exonagat-three_prime_utr-4784Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_170 91429..91634 +
EsuBft1546_8a-0001-exonagat-three_prime_utr-4785Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_170 91983..92314 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1546_8a-0001 ID=EsuBft1546_8a-0001|Name=EsuBft1546_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1438bp|location=Sequence derived from alignment at Scaffold_170:90399..92314+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTGTCGGCGAATGGATACCGCAGACACTCCTGGCAATTGTCCTCCG
AAATGCGGTTCAAGTGCAGCAGGCGGCCGAGATCCCACCGACGAGAGTCT
TACAACCTCCGCGGGTCAAGGCCTCCGACCAGGCTCCTGACTCATCGGCG
GATGCTCCAAGCGTGGGTAACGTGGATTTGAGCGAGGTGCAATGGCCTGA
GGGCATCAAAGAAATTGACCTGCTGCTGCTCGACGAGGTGATTGAAGGGA
TGTTGTGGTGGGTCTGGAGTGCTTTTCATTCTGCGCGCTCGGACTTCCCT
ACGTCCTTTTACTACTTCCCATCGAAGACGTTGTGTGGCCACAAGGACTT
GAGAGACTGTCTCTATCTCCCTGGCTGCGATCAGCCTATCGACAACCTGT
GGTGGGCGCCGGCGCTGAAATCCTTGGAATCTTCAACACCTTCGGAGGTT
CGCCTGATGGAAACCCCGAACACGAATTTGCACGAGCCCCGCCTTGTGGG
TGTCTTCGACTCCCCCTTCACTACTCTGCCAGCGAGCCTTGCGACTCTTT
GGCTTGGCGACAGCTTCTGTCAGTCGCTTGAAGACGTTACTTGGCCGAGC
GGGCTTGTCACTTTGGGGCTCGGTTCTACTCTTTCAGAGTTCGACAGCGT
TTCGTGGTCCTCGAATCTTCGAAACTTATACTTGGTGGACGAGATAGAAT
GGGCAGAGTACCCTCCTGGCTGCAGGGTGAACGTCGTGATGGATTTCGAC
ATTGAGAGCGCTATCCATGTCGCGGCGGTTGATTATTACCATGATCTGGA
GCATTTGGACGAGTGTTGCATCCATACGGGCTCTTGGGATAACGGGAATG
AGGACTACCTCGAGGTCCACGAGCAGCAAGAGGGCTACCAAATATTGTAA
ACACGATGTAGCGTGCCTTGTCTACAGGCTTGAATGTGGAAAAGGCGGTG
GAGGGACCGTTATGTCAGCAACTAGCAATGATTATTCACGCGAAACGTGT
TGTTGGTAGGAAGGCCCTTGAGTGCGCGGAGGTTCTTCATTGGTAGGGCT
ATGGGCTTGATTTCGATGCTGGAGCCTTCTGTCCTCTTGTTGAATGGCGA
TAGAAGGGCACCACGATGCTGTAGTGTCGGGGGTGTACACTTTTAGGCAT
AGAAGAGCTTGGCATTCGCACGATCACTTATTATGAAGAGTTGAGGGCGG
GTATTGCAACGTTGATTATTGGTGCCTGATCTGCAAGTAGGGCAAAATCT
TTCACGTTCCCTACGGATCTATCTCCGGATTGACGAGCCTGCTCCCCCAG
GGTCCCAACTAGGCGGGAGACTGTGCTCTGCAGGAACAATGAACAAGGCG
GGTGTAGAGCTAGCATCTGTGGTAAAATTGAGGCCAGGGCAGCTTCTAGG
ACCATGACAGCATGGATCGGACGGAATCCCCAAAACCT
back to top

protein sequence of EsuBft1546_8a-0001

>EsuBft1546_8 ID=EsuBft1546_8|Name=EsuBft1546_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=299bp
MLVGEWIPQTLLAIVLRNAVQVQQAAEIPPTRVLQPPRVKASDQAPDSSA
DAPSVGNVDLSEVQWPEGIKEIDLLLLDEVIEGMLWWVWSAFHSARSDFP
TSFYYFPSKTLCGHKDLRDCLYLPGCDQPIDNLWWAPALKSLESSTPSEV
RLMETPNTNLHEPRLVGVFDSPFTTLPASLATLWLGDSFCQSLEDVTWPS
GLVTLGLGSTLSEFDSVSWSSNLRNLYLVDEIEWAEYPPGCRVNVVMDFD
IESAIHVAAVDYYHDLEHLDECCIHTGSWDNGNEDYLEVHEQQEGYQIL
back to top

mRNA from alignment at Scaffold_170:90399..92314+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1546_8a-0001 ID=EsuBft1546_8a-0001|Name=EsuBft1546_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1916bp|location=Sequence derived from alignment at Scaffold_170:90399..92314+ (Ectocarpus subulatus male Bft15b)
ATGCTTGTCGGCGAATGGATACCGCAGACACTCCTGGCAATTGTCCTCCG
AAATGCGGTTCAAGTGCAGCAGGCGGCCGAGATCCCACCGACGAGAGTCT
TACAACCTCGTAAGGTGCTCAGGTTGGGGTGAACTTTCACTCAACGCGCA
GCGCGGGTCAAGGCCTCCGACCAGGCTCCTGACTCATCGGCGGATGCTCC
AAGCGTGGGTAACGTGGATTTGAGCGAGGTGCAATGGCCTGAGGGCATCA
AAGAAATTGACCTGCTGCTGCTCGACGAGGTGATTGAAGGGATGTTGTGG
TGGGTCTGGAGTGCTTTTCATTCTGCGCGCTCGGACTTCCCTACGTCCTT
TTACTACTTGTATAGAGGCTCTTTGAATCGTTAGCTTCTTGGAGCGAGAT
TTTCTTCGGGCCTGCGAGAGATCTTCCTCGGAGAAGCTTTTGACCAGCCC
ATCGAAGACGTTGTGTGGCCACAAGGACTTGAGAGACTGTCTCTATCTCC
CTGGCTGCGATCAGCCTATCGACAACCTGTGGTGGGCGCCGGCGCTGAAA
TCCTTGGAATCTTCAACACCTTCGGAGGTTCGCCTGATGGAAACCCCGAA
CACGAATTTGCACGAGCCCCGCCTTGTGGGTGTCTTCGACTCCCCCTTCA
CTACTCTGCCAGCGAGCCTTGCGACTCTTTGGCTTGGCGACAGCTTCTGT
CAGTCGCTTGAAGACGTTACTTGGCCGAGCGGGCTTGTCACTTTGGGGCT
CGGTTCTACTCTTTCAGAGTTCGACAGCGTTTCGTGGTCCTCGAATCTTC
GAAACTTATACTTGGTGGACGAGATAGAATGGGCAGAGTACCCTCCTGGC
TGCAGGGTGAACGTCGTGATGGATTTCGACATTGAGAGCGCTATCCATGT
CGCGGCGGTTGATTATTACCATGATCTGGAGCATTTGGACGAGTGTTGCA
TCCATACGGGCTCTTGGGATAACGGGAATGAGGACTACCTCGAGGTCCAC
GAGCAGCAAGAGGGCTACCAAATATTGTAAACACGATGTAGCGTGCCTTG
TCTACAGGCTTGAATGTGGAAAAGGCGGTGGAGGGACCGTTATGTCAGCA
ACTAGCAATGATTATTCACGCGAAACGTGTTGTTGGTAGGAAGGCCCTTG
AGTGCGCGGAGGTTCTTCATTGGTAGGGCTATGGGCTTGATTTCGATGCT
GGAGCCTTCTGTCCTCTTGTTGAATGGCGATAGAAGGTAAGAAGCAAGCT
TGCGTTGCTGTACTTCCTGGGCGTATGTAGAAGCTGGCGCCGTTGCGGGA
ATGTGAAACAATAGATCATGTGGCTGTCAAACTTTCCAAACTTGCTGATG
TACATTAGAAGCTTCATCTTGTCCCGGTAGCGCAGTGATTAAGAGCATAA
ATTGGTGATCGGTTTCGGCGTAGAGGGCACATTTTTCTGCACCCATCACT
GCTAAGAGCATTAATTGGCCGTTGGCGGGTTTGGCCAGTATGCCACGTCG
TCATTAAAAGATATGTCCATCCCCTGTTTTTGTTTCCTTTCGGCTTGAGG
CTTGCCCTCGGCTAGTCAAGCCTTCGCCTTGCAGGGCACCACGATGCTGT
AGTGTCGGGGGTGTACACTTTTAGGCATAGAAGAGCTTGGCATTCGCACG
ATCACTTATTATGAAGAGTTGAGGGCGGGTATTGCAACGTTGATTATTGG
TGCCTGATCTGCAAGTAGGGCAAAATCTTTCACGTTCCCTACGGATCTAT
CTCCGGATTGACGAGCCTGCTCCCCCAGGGTCCCAACTAGGCGGGAGACT
GTGCTCTGCAGGAACAATGAACAAGGCGGGTGTAGAGCTAGCATCTGTGG
TAAAATTGAGGCCAGGGCAGCTTCTAGGACCATGACAGCATGGATCGGAC
GGAATCCCCAAAACCT
back to top

Coding sequence (CDS) from alignment at Scaffold_170:90399..92314+

>EsuBft1546_8a-0001 ID=EsuBft1546_8a-0001|Name=EsuBft1546_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=900bp|location=Sequence derived from alignment at Scaffold_170:90399..92314+ (Ectocarpus subulatus male Bft15b)
ATGCTTGTCGGCGAATGGATACCGCAGACACTCCTGGCAATTGTCCTCCG
AAATGCGGTTCAAGTGCAGCAGGCGGCCGAGATCCCACCGACGAGAGTCT
TACAACCTCCGCGGGTCAAGGCCTCCGACCAGGCTCCTGACTCATCGGCG
GATGCTCCAAGCGTGGGTAACGTGGATTTGAGCGAGGTGCAATGGCCTGA
GGGCATCAAAGAAATTGACCTGCTGCTGCTCGACGAGGTGATTGAAGGGA
TGTTGTGGTGGGTCTGGAGTGCTTTTCATTCTGCGCGCTCGGACTTCCCT
ACGTCCTTTTACTACTTCCCATCGAAGACGTTGTGTGGCCACAAGGACTT
GAGAGACTGTCTCTATCTCCCTGGCTGCGATCAGCCTATCGACAACCTGT
GGTGGGCGCCGGCGCTGAAATCCTTGGAATCTTCAACACCTTCGGAGGTT
CGCCTGATGGAAACCCCGAACACGAATTTGCACGAGCCCCGCCTTGTGGG
TGTCTTCGACTCCCCCTTCACTACTCTGCCAGCGAGCCTTGCGACTCTTT
GGCTTGGCGACAGCTTCTGTCAGTCGCTTGAAGACGTTACTTGGCCGAGC
GGGCTTGTCACTTTGGGGCTCGGTTCTACTCTTTCAGAGTTCGACAGCGT
TTCGTGGTCCTCGAATCTTCGAAACTTATACTTGGTGGACGAGATAGAAT
GGGCAGAGTACCCTCCTGGCTGCAGGGTGAACGTCGTGATGGATTTCGAC
ATTGAGAGCGCTATCCATGTCGCGGCGGTTGATTATTACCATGATCTGGA
GCATTTGGACGAGTGTTGCATCCATACGGGCTCTTGGGATAACGGGAATG
AGGACTACCTCGAGGTCCACGAGCAGCAAGAGGGCTACCAAATATTGTAA
back to top