EsuBft1546_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1546_5a-0001
Unique NameEsuBft1546_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_170contigScaffold_170:107248..108027 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1546_5
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length78
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1546_5aEsuBft1546_5aEctocarpus subulatus male Bft15bgeneScaffold_170 107248..108027 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1546_5a-0001-exonEsuBft1546_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_170 107248..108027 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1546_5a-0001-exonagat-five_prime_utr-3101Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_170 107248..107303 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1546_5a-0001-cdsEsuBft1546_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_170 107304..107900 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1546_5a-0001-exonagat-three_prime_utr-4781Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_170 107901..108027 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1546_5a-0001EsuBft1546_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_170 107304..107900 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1546_5a-0001 ID=EsuBft1546_5a-0001|Name=EsuBft1546_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=780bp|location=Sequence derived from alignment at Scaffold_170:107248..108027+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGTGGCGTAGGCCGCAAACACTCTAGAGTTTGCCCCTCGAGGGAAGCCAC
ATCGGGATGAGCTCTGCTGGAGACGAAGAGCGCGCTGCTGCGAGCGGAGA
ACAGATCCGCCCGCCAGTGCAGGAGGGCCGCGACGCGGAGCTTGCAAGTT
TGCAACGGCAGATTTCGCAATTGGCGGCCCTGGTGGAGGAATCGGTGAAG
AAGAAGGAGCCTGGCAGCCTCGCGGCGGATGCAGCCAGTAGGGGCGACTG
GGTTGCTGCCCCCAGAGGCCAACGAGAAGAGCCCACGCTGCCGCTCGGCG
GTGGCGGGGGATTTCTCCAGCAGCAAACGAGAGATAGTGGGCAAGGACCA
CGGACGCTGCTGGAAGGCGGCTGGGCCAGCAGATCGGGAGCGAACCCTGT
TGGACCAGCCGGAGTGGGCCCGGGCATAGGACCGGACTACGGGGAAGCGA
GGGGGTTAAACCCCCCAGGTGAGATACCCGTGATTCGAGGAAATGGAGAA
TACCTCGACGGCTACAGCAGTAGCCACATGAAGAGGGTAACGGTCAATGC
TTCGCTCCTAGACGGAAAAAGCCGTGGCCACGGATTTGACTCGTGGCGAA
AATCATTCATCCAAGCTGCGAAGATCATCGACTTGGACGGGCTATTTATC
TGAGATGCAGAGAGCAGTAGCCCCGTGGGCGACCCAAACTTGCCGACTTC
CGAACTGCTCCGTAGGGGGTACACGAGAGCAGAAGTCCAACGAGGGCTTC
AGGCGTTCCACTTTATCATTACTGTTGTGG
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protein sequence of EsuBft1546_5a-0001

>EsuBft1546_5 ID=EsuBft1546_5|Name=EsuBft1546_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=198bp
MSSAGDEERAAASGEQIRPPVQEGRDAELASLQRQISQLAALVEESVKKK
EPGSLAADAASRGDWVAAPRGQREEPTLPLGGGGGFLQQQTRDSGQGPRT
LLEGGWASRSGANPVGPAGVGPGIGPDYGEARGLNPPGEIPVIRGNGEYL
DGYSSSHMKRVTVNASLLDGKSRGHGFDSWRKSFIQAAKIIDLDGLFI
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mRNA from alignment at Scaffold_170:107248..108027+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1546_5a-0001 ID=EsuBft1546_5a-0001|Name=EsuBft1546_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=780bp|location=Sequence derived from alignment at Scaffold_170:107248..108027+ (Ectocarpus subulatus male Bft15b)
TGTGGCGTAGGCCGCAAACACTCTAGAGTTTGCCCCTCGAGGGAAGCCAC
ATCGGGATGAGCTCTGCTGGAGACGAAGAGCGCGCTGCTGCGAGCGGAGA
ACAGATCCGCCCGCCAGTGCAGGAGGGCCGCGACGCGGAGCTTGCAAGTT
TGCAACGGCAGATTTCGCAATTGGCGGCCCTGGTGGAGGAATCGGTGAAG
AAGAAGGAGCCTGGCAGCCTCGCGGCGGATGCAGCCAGTAGGGGCGACTG
GGTTGCTGCCCCCAGAGGCCAACGAGAAGAGCCCACGCTGCCGCTCGGCG
GTGGCGGGGGATTTCTCCAGCAGCAAACGAGAGATAGTGGGCAAGGACCA
CGGACGCTGCTGGAAGGCGGCTGGGCCAGCAGATCGGGAGCGAACCCTGT
TGGACCAGCCGGAGTGGGCCCGGGCATAGGACCGGACTACGGGGAAGCGA
GGGGGTTAAACCCCCCAGGTGAGATACCCGTGATTCGAGGAAATGGAGAA
TACCTCGACGGCTACAGCAGTAGCCACATGAAGAGGGTAACGGTCAATGC
TTCGCTCCTAGACGGAAAAAGCCGTGGCCACGGATTTGACTCGTGGCGAA
AATCATTCATCCAAGCTGCGAAGATCATCGACTTGGACGGGCTATTTATC
TGAGATGCAGAGAGCAGTAGCCCCGTGGGCGACCCAAACTTGCCGACTTC
CGAACTGCTCCGTAGGGGGTACACGAGAGCAGAAGTCCAACGAGGGCTTC
AGGCGTTCCACTTTATCATTACTGTTGTGG
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Coding sequence (CDS) from alignment at Scaffold_170:107248..108027+

>EsuBft1546_5a-0001 ID=EsuBft1546_5a-0001|Name=EsuBft1546_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=597bp|location=Sequence derived from alignment at Scaffold_170:107248..108027+ (Ectocarpus subulatus male Bft15b)
ATGAGCTCTGCTGGAGACGAAGAGCGCGCTGCTGCGAGCGGAGAACAGAT
CCGCCCGCCAGTGCAGGAGGGCCGCGACGCGGAGCTTGCAAGTTTGCAAC
GGCAGATTTCGCAATTGGCGGCCCTGGTGGAGGAATCGGTGAAGAAGAAG
GAGCCTGGCAGCCTCGCGGCGGATGCAGCCAGTAGGGGCGACTGGGTTGC
TGCCCCCAGAGGCCAACGAGAAGAGCCCACGCTGCCGCTCGGCGGTGGCG
GGGGATTTCTCCAGCAGCAAACGAGAGATAGTGGGCAAGGACCACGGACG
CTGCTGGAAGGCGGCTGGGCCAGCAGATCGGGAGCGAACCCTGTTGGACC
AGCCGGAGTGGGCCCGGGCATAGGACCGGACTACGGGGAAGCGAGGGGGT
TAAACCCCCCAGGTGAGATACCCGTGATTCGAGGAAATGGAGAATACCTC
GACGGCTACAGCAGTAGCCACATGAAGAGGGTAACGGTCAATGCTTCGCT
CCTAGACGGAAAAAGCCGTGGCCACGGATTTGACTCGTGGCGAAAATCAT
TCATCCAAGCTGCGAAGATCATCGACTTGGACGGGCTATTTATCTGA
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