EsuBft1546_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1546_4a-0001
Unique Name	EsuBft1546_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_170	contig	Scaffold_170:108029..110707 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	7425.NV18849-PA
ProteomeId	EsuBft1546_4
Protein domains	PS51257
Protein domains	PTHR11439
Owner	apollo_admin@sb-roscoff.fr
Note	retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon	2
Max annot lvl	33208\|Metazoa
Length	1039
Hectar predicted targeting category	other localisation
Evalue	1.75e-26
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,38DPC@33154\|Opisthokonta,3BGB6@33208\|Metazoa,3D5G4@33213\|Bilateria,41ZUZ@6656\|Arthropoda,3SKEY@50557\|Insecta
Date last modified	2016-06-13
Date creation	2016-06-13
Description	Reverse transcriptase (RNA-dependent DNA polymerase)
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0006259
EC	3.1
GO	0097159
GO	1901363
GO	0004518
GO	0044424
GO	0016740

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1546_4a	EsuBft1546_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_170 108029..110707 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1546_4a-0001-exon	EsuBft1546_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_170 108029..108591 +
EsuBft1546_4a-0001-exon	agat-exon-14981	Ectocarpus subulatus male Bft15b	exon	Scaffold_170 110232..110707 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1546_4a-0001-exon	agat-five_prime_utr-3100	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_170 108029..108137 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1546_4a-0001-cds	EsuBft1546_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_170 108138..108591 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1546_4a-0001	EsuBft1546_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_170 108138..110707 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_170:108029..110707+
coding sequence from alignment at Scaffold_170:108029..110707+

spliced messenger RNA

>EsuBft1546_4a-0001 ID=EsuBft1546_4a-0001|Name=EsuBft1546_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1039bp|location=Sequence derived from alignment at Scaffold_170:108029..110707+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AAAAGAAGCTGACAAAGCAATTATCAGCAACTGTACGTCAGCGAAAGAGG
TCCTTGCGGAATTGGAAAAGGTCTACGATCCGGAGTCACAGGGGTCAAAA
CAGGCCTTGATGCGGAAGATGTTCGACTTTGCAACCCCCACACACAGCAA
CGCAACCCCATCGAGCACCTGTAGTTTCTCGAGCTGCTGTACGCCCGCCT
GCAGCGAAAAGGGGCTCAATGCTGAACAACCCTTCGTTCTCGCCCACTTC
GTTGGTTCCCTCCCACCCGAGTACCAACAAGCGAAGTTCCTGTTGGAGAC
AGCAACGGCGCTGGATAGGGCCGAGATCGTCAGGATCGTGAGCACGGTGC
ACGCGAGCCTCCCGGAGGGAAGGAAGGCCTCGAAGGGCCAGCGTAGGGCG
GAGCATGCTCTCCTCGCGAGTGACGGTGGCGGCGGGGGAGGAGCGCCGGG
CCGCGGCAACAGCGGCCGCCGCAAGGGTCGCGGCGGCGGCGGCGGCAACC
AGAAGGGGGAAGCGGGTGGCGCGAAGGCTCGTGGCGGCGGTGGAGGCGGC
GACGCCGATACGGGGCCGAAGCGAGAGGATAAGGAGAGAGGGGAGTGGCC
GGTGAGGGAGGCCATCGGCAGCATGATGTGGGTGTCGACTTTCTCGCGTC
CAGACGTCTCGTTCGCCGTGCGTGCGGTAGCGCGCCACGCCCACGCCCCG
GCGAAGCGGCACTGGGATGCCATACAGAAGATCCTCGGCTACCTGAAAGG
GACGAGGGACCTCGGCATCACCTACCAACGGGGATCGGGTTTAGGGCTTG
CCGTGTACGTAGACGCTAGCTACGCCGACACGGAGGATAGGCGTTCGGTG
TCAGGGTTGGCGACGACGGTTGGAGGTACCGTAGTCAGCCATGGTAGCAA
GACGCAGAGCATCGTGTCTTTGTCTTCGACGGAAGCCGAGTACATTGCTG
CCGGGCAGGGCGTCAAGGAGGCGTTGTTTGTGCGTGCTGTGCTTCGTTCG
TTGCCCCAGAGACCAGTGGTAGCAGTATCCATGGNNNNN

protein sequence of EsuBft1546_4a-0001

>EsuBft1546_4 ID=EsuBft1546_4|Name=EsuBft1546_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=310bp
MRKMFDFATPTHSNATPSSTCSFSSCCTPACSEKGLNAEQPFVLAHFVGS
LPPEYQQAKFLLETATALDRAEIVRIVSTVHASLPEGRKASKGQRRAEHA
LLASDGGGGGGAPGRGNSGRRKGRGGGGGNQKGEAGGAKARGGGGGGDAD
TGPKREDKERGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKR
HWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTEDRRSVSGL
ATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGQGVKEALFVRAVLRSLPQ
RPVVAVSMXX

mRNA from alignment at Scaffold_170:108029..110707+

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1546_4a-0001 ID=EsuBft1546_4a-0001|Name=EsuBft1546_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2679bp|location=Sequence derived from alignment at Scaffold_170:108029..110707+ (Ectocarpus subulatus male Bft15b)
AAAAGAAGCTGACAAAGCAATTATCAGCAACTGTACGTCAGCGAAAGAGG
TCCTTGCGGAATTGGAAAAGGTCTACGATCCGGAGTCACAGGGGTCAAAA
CAGGCCTTGATGCGGAAGATGTTCGACTTTGCAACCCCCACACACAGCAA
CGCAACCCCATCGAGCACCTGTAGTTTCTCGAGCTGCTGTACGCCCGCCT
GCAGCGAAAAGGGGCTCAATGCTGAACAACCCTTCGTTCTCGCCCACTTC
GTTGGTTCCCTCCCACCCGAGTACCAACAAGCGAAGTTCCTGTTGGAGAC
AGCAACGGCGCTGGATAGGGCCGAGATCGTCAGGATCGTGAGCACGGTGC
ACGCGAGCCTCCCGGAGGGAAGGAAGGCCTCGAAGGGCCAGCGTAGGGCG
GAGCATGCTCTCCTCGCGAGTGACGGTGGCGGCGGGGGAGGAGCGCCGGG
CCGCGGCAACAGCGGCCGCCGCAAGGGTCGCGGCGGCGGCGGCGGCAACC
AGAAGGGGGAAGCGGGTGGCGCGAAGGCTCGTGGCGGCGGTGGAGGCGGC
GACGCCGATACGGGTAGCATGCGCGGTTGCTGTTCCCGGTGCGGCAAGAA
GGGCCACCAGGTGGCCAACTGCCCCGAGAGCAAGCCCGTGCGATGTGAGA
CATGCAAGGGCGACGGGCACGACAAGAGCAAGTGCCCGACCGAAGAGGCG
GTGCTCGTGGTGGAAGTGCCGGCGGGAGGAGCGTTTGNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNAACGAGAAGGGCATGAACCTCAATCACTGG
GATGTGAAGCAGGCGTATACACACGCTACGCTAGACGAGGAGGTTTTTCT
GAAGCTCCCAGCTGGGTGTGGGGACAAATCGCATAAGATTGCTAAGGCTG
AGCGTGCGATTTATGGTCTGAAGCAGAGCGGTAGGCAGTGGGGGTACCAC
GCTGCTGATACGCTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNCTTGCTTCTCTCAACAAGAAATTTCCCACCAAAAACCTTG
GAGAGTGTCAATGGTTTGATGGGTGTGCCATCGAGAGAGATGTGGATGCT
GGGACTCTTAGAATCTCCCAAACCGCGAATATCGACAGCATGGTTTAACG
CTTCGATGTGCAATCAACTTCCCGCATCCCCGCTACCCCTGGTGCCGATC
TAGGGCCGAAGCGAGAGGATAAGGAGAGAGGGGAGTGGCCGGTGAGGGAG
GCCATCGGCAGCATGATGTGGGTGTCGACTTTCTCGCGTCCAGACGTCTC
GTTCGCCGTGCGTGCGGTAGCGCGCCACGCCCACGCCCCGGCGAAGCGGC
ACTGGGATGCCATACAGAAGATCCTCGGCTACCTGAAAGGGACGAGGGAC
CTCGGCATCACCTACCAACGGGGATCGGGTTTAGGGCTTGCCGTGTACGT
AGACGCTAGCTACGCCGACACGGAGGATAGGCGTTCGGTGTCAGGGTTGG
CGACGACGGTTGGAGGTACCGTAGTCAGCCATGGTAGCAAGACGCAGAGC
ATCGTGTCTTTGTCTTCGACGGAAGCCGAGTACATTGCTGCCGGGCAGGG
CGTCAAGGAGGCGTTGTTTGTGCGTGCTGTGCTTCGTTCGTTGCCCCAGA
GACCAGTGGTAGCAGTATCCATGGNNNNN

Coding sequence (CDS) from alignment at Scaffold_170:108029..110707+

>EsuBft1546_4a-0001 ID=EsuBft1546_4a-0001|Name=EsuBft1546_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=930bp|location=Sequence derived from alignment at Scaffold_170:108029..110707+ (Ectocarpus subulatus male Bft15b)
ATGCGGAAGATGTTCGACTTTGCAACCCCCACACACAGCAACGCAACCCC
ATCGAGCACCTGTAGTTTCTCGAGCTGCTGTACGCCCGCCTGCAGCGAAA
AGGGGCTCAATGCTGAACAACCCTTCGTTCTCGCCCACTTCGTTGGTTCC
CTCCCACCCGAGTACCAACAAGCGAAGTTCCTGTTGGAGACAGCAACGGC
GCTGGATAGGGCCGAGATCGTCAGGATCGTGAGCACGGTGCACGCGAGCC
TCCCGGAGGGAAGGAAGGCCTCGAAGGGCCAGCGTAGGGCGGAGCATGCT
CTCCTCGCGAGTGACGGTGGCGGCGGGGGAGGAGCGCCGGGCCGCGGCAA
CAGCGGCCGCCGCAAGGGTCGCGGCGGCGGCGGCGGCAACCAGAAGGGGG
AAGCGGGTGGCGCGAAGGCTCGTGGCGGCGGTGGAGGCGGCGACGCCGAT
ACGGGGCCGAAGCGAGAGGATAAGGAGAGAGGGGAGTGGCCGGTGAGGGA
GGCCATCGGCAGCATGATGTGGGTGTCGACTTTCTCGCGTCCAGACGTCT
CGTTCGCCGTGCGTGCGGTAGCGCGCCACGCCCACGCCCCGGCGAAGCGG
CACTGGGATGCCATACAGAAGATCCTCGGCTACCTGAAAGGGACGAGGGA
CCTCGGCATCACCTACCAACGGGGATCGGGTTTAGGGCTTGCCGTGTACG
TAGACGCTAGCTACGCCGACACGGAGGATAGGCGTTCGGTGTCAGGGTTG
GCGACGACGGTTGGAGGTACCGTAGTCAGCCATGGTAGCAAGACGCAGAG
CATCGTGTCTTTGTCTTCGACGGAAGCCGAGTACATTGCTGCCGGGCAGG
GCGTCAAGGAGGCGTTGTTTGTGCGTGCTGTGCTTCGTTCGTTGCCCCAG
AGACCAGTGGTAGCAGTATCCATGGNNNNN