Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D8LS77 |
| ProteomeId | EsuBft151_2 |
| Protein domains | IPR015901 |
| Protein domains | IPR001576 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | phosphoglycerate kinase os:synechococcus (strain ja-3-3ab) gn:pgk pe:3 sv:1 [Automatic annotation] |
| Nb exon | 2 |
| Max annot lvl | 2759|Eukaryota |
| Length | 1239 |
| Hectar predicted targeting category | other localisation |
| Evalue | 8.5e-42 |
| EggNOG OGs | COG0126@1|root,KOG1367@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | phosphoglycerate kinase activity |
| COG category | G |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0005524 |
| GO | 0019253 |
| GO | 0004618 |
| GO | 0016310 |
| GO | 0006096 |
| EC | 2.7.2.3 |
| GO | 0009507 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft151_2a-0001 ID=EsuBft151_2a-0001|Name=EsuBft151_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1239bp|location=Sequence derived from alignment at Scaffold_392:124987..126541- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGGGGTGTTCGAGTTCGACAAGTTTGCCGCGGGAACGTTCGCCGTGGC
CAGCTGCCTGGCCGACCTCACCTCGAAGGGAGCGATCACCATCATCGGAG
GCGGAGACTCGGTGGCTGCCGTGGAGAAGGCCAACCTCGCCGACAAGATG
TCCCACATTTCCACCGGCGGCGGAGCTAGCCTAGAGCTGCTCGAGGGCAA
GGAGCTTCCGGGAGTAAACGCTATCGAGGAGAGGTCTTGAACTGGCATGC
TCGTGACGCTTGCCGTTCGCCGCTTGCTTCGCTGCTGCGGTGGGTAGCGC
GGTATAGACCTCGTTTAGTGCACTGACGGAATCAGTGGTAGCATTTAGGT
GAAGGCATCGGAAATTCATGCGGTATTTTGCTGTAGGACTGGGTATGTTC
TGTTCTGTTGTATCCCATAAATGTAGGAACGTCGTGATGGGTTGACTAAC
AGCGTGGATTTGACTATGCTCTTTTCCGACAAACGTGTATTTAAAGGTGT
AGGCGTATTGTTTGATTCATTCTTCCAGAGTTTTTCACAAGTTGTGCATT
TGGCCCTCCCATCATTGCCGTTTCGGCTTCCCGTCTATAACGAAATTCTG
GATCTCGAGTACCAGGACCTGGTTTGCGTCTCAACGCAGGCAGGGTTCAG
ACAGGCTCGTCTATTTCAATTTCTTTGGTGCAGTGACTTGTGGACGTTTT
GGAGGATATTTCATGGTTGCTCGCGTCTATGCGGGAATGTGGCAGGGTAG
ACGTGGGACGGAGTTAGCCGGTGTGGGGGAAAACACCCCCGTGATTTTTT
GCGCGTGGAATTAGTTTCAGTTCTCTATCATCACCATCAATAACATAGGG
TAGCTGCCAACGTTGAATATTAGAAAGGGACGAAGGAGACGAAGAAATTT
GGCAAACAATTAGGTTCTCGGTGATCGTGTGTTACGTGGTGTGCTTCTGG
TGTATGGTCTTGGCTAACACTGTTACTGAATTGGGCAAATTTCTCTTGCC
TCTCTCACTTGGAAGCCCATCGAGAAGGGCGGTAAGTTGAGCACCAGCTC
TGTTGCGCAACTTCTTGTGCCGCTCAGGTTTGGCGCTCATTTGTGTAGAC
CTGACAACGCAGGGGCATTTACTTCCACTCTCGTATGGGTCTGGCACAGA
TAATGCATGGGCACATTTCCTGCAAAGAACACAGGTGTCACCGAAAACCT
CGTCGACGCCCTTAATGTCTTATCTGCTACATTTCGTTG back to topprotein sequence of EsuBft151_2a-0001 >EsuBft151_2 ID=EsuBft151_2|Name=EsuBft151_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=79bp
MGVFEFDKFAAGTFAVASCLADLTSKGAITIIGGGDSVAAVEKANLADKM
SHISTGGGASLELLEGKELPGVNAIEERS back to topmRNA from alignment at Scaffold_392:124987..126541- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft151_2a-0001 ID=EsuBft151_2a-0001|Name=EsuBft151_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1555bp|location=Sequence derived from alignment at Scaffold_392:124987..126541- (Ectocarpus subulatus male Bft15b)
ATGGGGGTGTTCGAGTTCGACAAGTTTGCCGCGGGAACGTTCGCCGTGGC
CAGCTGCCTGGCCGACCTCACCTCGAAGGGAGCGATCACCATCATCGGAG
GCGGAGACTCGGTACGATTGAGACATTCCCGGAAACATGTTGCTTGAAGA
GAACGTAACAAAACAAGTCCTACTCATCACTACCGAAAGTCAGTAGACAC
ACACGCCACCCATGGTCAATTACAAGGTGGTGGCCTTAAGGCGGTGGAGA
TGCCAGCAGGCTCCGCGGTCCGGCAACAGGTAGTACATTGTTGTTCGAGG
AAAAAAGTGCATCGAGGCGCGAACGCCTTCTGATCGTCCTCTTGCTGCCC
CCGCCCCCTCTTCCTCGCGCGCTCCCCACTCACTGCGACCACCTCTGCAA
ATACCAACTGAAAAATGAATTAACCAGGTGGCTGCCGTGGAGAAGGCCAA
CCTCGCCGACAAGATGTCCCACATTTCCACCGGCGGCGGAGCTAGCCTAG
AGCTGCTCGAGGGCAAGGAGCTTCCGGGAGTAAACGCTATCGAGGAGAGG
TCTTGAACTGGCATGCTCGTGACGCTTGCCGTTCGCCGCTTGCTTCGCTG
CTGCGGTGGGTAGCGCGGTATAGACCTCGTTTAGTGCACTGACGGAATCA
GTGGTAGCATTTAGGTGAAGGCATCGGAAATTCATGCGGTATTTTGCTGT
AGGACTGGGTATGTTCTGTTCTGTTGTATCCCATAAATGTAGGAACGTCG
TGATGGGTTGACTAACAGCGTGGATTTGACTATGCTCTTTTCCGACAAAC
GTGTATTTAAAGGTGTAGGCGTATTGTTTGATTCATTCTTCCAGAGTTTT
TCACAAGTTGTGCATTTGGCCCTCCCATCATTGCCGTTTCGGCTTCCCGT
CTATAACGAAATTCTGGATCTCGAGTACCAGGACCTGGTTTGCGTCTCAA
CGCAGGCAGGGTTCAGACAGGCTCGTCTATTTCAATTTCTTTGGTGCAGT
GACTTGTGGACGTTTTGGAGGATATTTCATGGTTGCTCGCGTCTATGCGG
GAATGTGGCAGGGTAGACGTGGGACGGAGTTAGCCGGTGTGGGGGAAAAC
ACCCCCGTGATTTTTTGCGCGTGGAATTAGTTTCAGTTCTCTATCATCAC
CATCAATAACATAGGGTAGCTGCCAACGTTGAATATTAGAAAGGGACGAA
GGAGACGAAGAAATTTGGCAAACAATTAGGTTCTCGGTGATCGTGTGTTA
CGTGGTGTGCTTCTGGTGTATGGTCTTGGCTAACACTGTTACTGAATTGG
GCAAATTTCTCTTGCCTCTCTCACTTGGAAGCCCATCGAGAAGGGCGGTA
AGTTGAGCACCAGCTCTGTTGCGCAACTTCTTGTGCCGCTCAGGTTTGGC
GCTCATTTGTGTAGACCTGACAACGCAGGGGCATTTACTTCCACTCTCGT
ATGGGTCTGGCACAGATAATGCATGGGCACATTTCCTGCAAAGAACACAG
GTGTCACCGAAAACCTCGTCGACGCCCTTAATGTCTTATCTGCTACATTT
CGTTG back to topCoding sequence (CDS) from alignment at Scaffold_392:124987..126541- >EsuBft151_2a-0001 ID=EsuBft151_2a-0001|Name=EsuBft151_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=240bp|location=Sequence derived from alignment at Scaffold_392:124987..126541- (Ectocarpus subulatus male Bft15b)
ATGGGGGTGTTCGAGTTCGACAAGTTTGCCGCGGGAACGTTCGCCGTGGC
CAGCTGCCTGGCCGACCTCACCTCGAAGGGAGCGATCACCATCATCGGAG
GCGGAGACTCGGTGGCTGCCGTGGAGAAGGCCAACCTCGCCGACAAGATG
TCCCACATTTCCACCGGCGGCGGAGCTAGCCTAGAGCTGCTCGAGGGCAA
GGAGCTTCCGGGAGTAAACGCTATCGAGGAGAGGTCTTGA back to top
|