EsuBft151_23a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft151_23a-0001
Unique NameEsuBft151_23a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_392contigScaffold_392:332752..334819 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft151_23
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length148
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft151_23aEsuBft151_23aEctocarpus subulatus male Bft15bgeneScaffold_392 332752..334819 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft151_23a-0001-exonagat-exon-79110Ectocarpus subulatus male Bft15bexonScaffold_392 332752..333031 +
EsuBft151_23a-0001-exonagat-exon-79111Ectocarpus subulatus male Bft15bexonScaffold_392 333386..333507 +
EsuBft151_23a-0001-exonEsuBft151_23a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_392 333741..334819 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft151_23a-0001-cdsEsuBft151_23a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_392 332752..333031 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft151_23a-0001-exonagat-three_prime_utr-4561Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_392 333969..334819 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft151_23a-0001EsuBft151_23Ectocarpus subulatus male Bft15bpolypeptideScaffold_392 332752..333968 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft151_23a-0001 ID=EsuBft151_23a-0001|Name=EsuBft151_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1481bp|location=Sequence derived from alignment at Scaffold_392:332752..334819+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTCTCGCAACATTTTTGCTGCCACCCCGCCTAGCTCCAAACGCAA
AACAGCCGAAGTGCTCGGGAAGTGTGCGCGGTGTGACAACGCCGAAGTCA
CGCGCTGCTCCGCGACTTTCGGCGGCTGCGAAAACTACAACTCCTCCGGC
TGCAGGTACAAGATCAGCATCCTCTCGGCTGCAGCGCGCTGCGTTACCTG
CCTCGCGGACGTCAACCCCGGCGTCCTTTGCTTGGGCGTGCCCAATCTCA
AGGGGACGAAGAACACCCGCGGCAAGACGGCGTACGTCAACACACACCTA
CGCTGGGAGGACTGTCTCGGGCAGAAGGTGAAACTAGGCAAGGAGGGAAA
GTCCGCCTTCAAGTTCATCGAGCGGGTCGATCAAGAGGACAGCAGGATCG
GGGTCCCGTGCGCCCGCTGCACGGACGAGATCGTCGAGGGAGACTTCGTC
ATCTCCACGTACCAGCCCGACGCTGAGAACCCTCTCCCGGCGAACAACCC
CCTCCACGCCAAGGGCTGCGCGCGTGCCGTCTTCGACGACAACCACGAGC
AGTTCGTGGACAACATGATGCTGGAGGGTATCTCCTCCGACAAGGTCGTC
AGCGCGGACAGCATCGACTTCGACTTCTGAAGTGAGTGCTGTGAGGTCTA
AATTTGGGCTTCTGTTCGGCACATGCCTCGGTCGGCTTTTGCGCCGCCAA
ATCATTCGGCTTTCACGCCACGTTCGGCAATTCTGCCACAAAATCATTCG
GCTATTCTGCCAACCATTCAAGAAATTCGTGTCGAGGCAAAGTCCTTGCC
GTTCAGTGACCTCAGGTCTCGTGTTGAGGATATTCGTGGCCGTGTTCAGG
AATCTCCTGCTGTCACTAGCGCAGATGCTGTGATTATGCACGTCTATCAT
ACGCGGACCGCCAAATGTCTGCGTGGGCGTTGCAATTTTCTTTCGTTTCG
AGGCGCTACAAATTCATGCACAAAACATTCGGAGTTGTGCGCGTGTCGGA
GTAGTCTCTGATGTACAGTCCAAGGTCATGCGGACATATCACATTCTGAA
ATTGCGTCGTGTACGGTTGAAAGCAGCGGTAAACCAGGAAACTGCAAAGG
TGACTAGACCGAACTCGCGCAGCGGGAAACTAGCGAGCAAAGCAGACGAT
TCGAGCCGGGCTCAACCTAAATCGAGCACCCGTGAAACAAGAAGCACTCG
GGCCCAACCTAAACCAAGCACCCGTCGGTGTAGCAAAAAAGCGAAAACTG
TTGACGAACTCAAGGCAGAGATAGTACCGCGGACGACCAGGCCAAGGGCC
GCTGCTGCGGCCAGACAAACAGACGCGAAACCCAATAGCGATCCTTCGGC
TCAGTCAAAAACACGCAGACGTGTCGGGGATGCCGAAAAGGAAGATCATA
CTAAGCAGCAGGGTAACGACGATGGAAGTAATAGTCATCAGGATGAACCG
CGGCCAATTATAGGTGCCGATCAAGTAGCGC
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protein sequence of EsuBft151_23a-0001

>EsuBft151_23 ID=EsuBft151_23|Name=EsuBft151_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=209bp
MASRNIFAATPPSSKRKTAEVLGKCARCDNAEVTRCSATFGGCENYNSSG
CRYKISILSAAARCVTCLADVNPGVLCLGVPNLKGTKNTRGKTAYVNTHL
RWEDCLGQKVKLGKEGKSAFKFIERVDQEDSRIGVPCARCTDEIVEGDFV
ISTYQPDAENPLPANNPLHAKGCARAVFDDNHEQFVDNMMLEGISSDKVV
SADSIDFDF
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mRNA from alignment at Scaffold_392:332752..334819+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft151_23a-0001 ID=EsuBft151_23a-0001|Name=EsuBft151_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2068bp|location=Sequence derived from alignment at Scaffold_392:332752..334819+ (Ectocarpus subulatus male Bft15b)
ATGGCTTCTCGCAACATTTTTGCTGCCACCCCGCCTAGCTCCAAACGCAA
AACAGCCGAAGTGCTCGGGAAGTGTGCGCGGTGTGACAACGCCGAAGTCA
CGCGCTGCTCCGCGACTTTCGGCGGCTGCGAAAACTACAACTCCTCCGGC
TGCAGGTACAAGATCAGCATCCTCTCGGCTGCAGCGCGCTGCGTTACCTG
CCTCGCGGACGTCAACCCCGGCGTCCTTTGCTTGGGCGTGCCCAATCTCA
AGGGGACGAAGAACACCCGCGGCAAGACGGGTAGGTCGCATCTCTGTTTT
GGTCTGTTAAGCTTTTTTGCACGTTTTCGTTTTCTCTGTGTTGCATTGCC
TTTGTCTCCTCCGGCCATGTCTGCGATCCTCGATCTATCTATGTAGATCC
ACCTCCTGCACATGCAGTTCTTCCCGCTCCGTGTCATATCTGTGATTGAT
TGCTCGTGTCGTTCCCTGTCATTTCTGTGATTGCTCGTGTCGCTCATTTT
TTCTCTCATTCGGGTCTCCTCGAATATTATCGTTTGTGCGTCCATCGTTA
TCTCAGCGTACGTCAACACGCATTTTTTCTCTCATTCGGGTCTCCTCGAA
TGTTATCGTTGTGCGTGCGCCATCGTTATCTCAGCGTACGTCAACACACA
CCTACGCTGGGAGGACTGTCTCGGGCAGAAGGTGAAACTAGGCAAGGAGG
GAAAGTCCGCCTTCAAGTTCATCGAGCGGGTCGATCAAGAGGACAGCAGG
ATCGGGGTGAGTCCCGGGTGTTCCGTGTCGTATGTTTTCGTGGTCAGCGC
TGCTTCTCACTTTGTGGCCACAGCTTTGGCCGGAAGAACATTTGCGCACC
ACCTGCATTTTTTTCTCGATTTGTGGCGCTGCTGTGTCCGACTACGTTCC
ATTCTTATTCTTCATTAATTTTCTTTGTGGACGCAAGCAGAGTAATACGT
TTTCTTTTAATTACTTTATTCCGGTGTGGACGGAAGCAGGTCCCGTGCGC
CCGCTGCACGGACGAGATCGTCGAGGGAGACTTCGTCATCTCCACGTACC
AGCCCGACGCTGAGAACCCTCTCCCGGCGAACAACCCCCTCCACGCCAAG
GGCTGCGCGCGTGCCGTCTTCGACGACAACCACGAGCAGTTCGTGGACAA
CATGATGCTGGAGGGTATCTCCTCCGACAAGGTCGTCAGCGCGGACAGCA
TCGACTTCGACTTCTGAAGTGAGTGCTGTGAGGTCTAAATTTGGGCTTCT
GTTCGGCACATGCCTCGGTCGGCTTTTGCGCCGCCAAATCATTCGGCTTT
CACGCCACGTTCGGCAATTCTGCCACAAAATCATTCGGCTATTCTGCCAA
CCATTCAAGAAATTCGTGTCGAGGCAAAGTCCTTGCCGTTCAGTGACCTC
AGGTCTCGTGTTGAGGATATTCGTGGCCGTGTTCAGGAATCTCCTGCTGT
CACTAGCGCAGATGCTGTGATTATGCACGTCTATCATACGCGGACCGCCA
AATGTCTGCGTGGGCGTTGCAATTTTCTTTCGTTTCGAGGCGCTACAAAT
TCATGCACAAAACATTCGGAGTTGTGCGCGTGTCGGAGTAGTCTCTGATG
TACAGTCCAAGGTCATGCGGACATATCACATTCTGAAATTGCGTCGTGTA
CGGTTGAAAGCAGCGGTAAACCAGGAAACTGCAAAGGTGACTAGACCGAA
CTCGCGCAGCGGGAAACTAGCGAGCAAAGCAGACGATTCGAGCCGGGCTC
AACCTAAATCGAGCACCCGTGAAACAAGAAGCACTCGGGCCCAACCTAAA
CCAAGCACCCGTCGGTGTAGCAAAAAAGCGAAAACTGTTGACGAACTCAA
GGCAGAGATAGTACCGCGGACGACCAGGCCAAGGGCCGCTGCTGCGGCCA
GACAAACAGACGCGAAACCCAATAGCGATCCTTCGGCTCAGTCAAAAACA
CGCAGACGTGTCGGGGATGCCGAAAAGGAAGATCATACTAAGCAGCAGGG
TAACGACGATGGAAGTAATAGTCATCAGGATGAACCGCGGCCAATTATAG
GTGCCGATCAAGTAGCGC
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Coding sequence (CDS) from alignment at Scaffold_392:332752..334819+

>EsuBft151_23a-0001 ID=EsuBft151_23a-0001|Name=EsuBft151_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=630bp|location=Sequence derived from alignment at Scaffold_392:332752..334819+ (Ectocarpus subulatus male Bft15b)
ATGGCTTCTCGCAACATTTTTGCTGCCACCCCGCCTAGCTCCAAACGCAA
AACAGCCGAAGTGCTCGGGAAGTGTGCGCGGTGTGACAACGCCGAAGTCA
CGCGCTGCTCCGCGACTTTCGGCGGCTGCGAAAACTACAACTCCTCCGGC
TGCAGGTACAAGATCAGCATCCTCTCGGCTGCAGCGCGCTGCGTTACCTG
CCTCGCGGACGTCAACCCCGGCGTCCTTTGCTTGGGCGTGCCCAATCTCA
AGGGGACGAAGAACACCCGCGGCAAGACGGCGTACGTCAACACACACCTA
CGCTGGGAGGACTGTCTCGGGCAGAAGGTGAAACTAGGCAAGGAGGGAAA
GTCCGCCTTCAAGTTCATCGAGCGGGTCGATCAAGAGGACAGCAGGATCG
GGGTCCCGTGCGCCCGCTGCACGGACGAGATCGTCGAGGGAGACTTCGTC
ATCTCCACGTACCAGCCCGACGCTGAGAACCCTCTCCCGGCGAACAACCC
CCTCCACGCCAAGGGCTGCGCGCGTGCCGTCTTCGACGACAACCACGAGC
AGTTCGTGGACAACATGATGCTGGAGGGTATCTCCTCCGACAAGGTCGTC
AGCGCGGACAGCATCGACTTCGACTTCTGA
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