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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 44056.XP_009032194.1 |
| ProteomeId | EsuBft151_21 |
| Protein domains | IPR003327 |
| Protein domains | Coil |
| Protein domains | IPR019347 |
| Protein domains | PTHR13183 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | 33 kda inner dynein arm light axonemal os:strongylocentrotus purpuratus pe:1 sv:1 [Automatic annotation] |
| Nb exon | 3 |
| Max annot lvl | 2759|Eukaryota |
| Length | 306 |
| Hectar predicted targeting category | other localisation |
| Evalue | 3.19e-31 |
| EggNOG OGs | KOG4001@1|root,KOG4001@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Preferred name | IDA4 |
| KEGG ko | ko:K10410 |
| KEGG Pathway | ko05016,map05016 |
| GOs | GO:0000226,GO:0001539,GO:0001578,GO:0003341,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005858,GO:0005875,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0015630,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0030286,GO:0032838,GO:0032991,GO:0034622,GO:0035082,GO:0036156,GO:0036159,GO:0040011,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044463,GO:0044464,GO:0044782,GO:0045504,GO:0048870,GO:0051179,GO:0051674,GO:0060271,GO:0060285,GO:0060294,GO:0065003,GO:0070286,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1902494 |
| Description | dynein heavy chain binding |
| COG category | S |
| BRITE | ko00000,ko00001,ko04812 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0007338 |
| GO | 0045504 |
| GO | 0005515 |
| GO | 0003700 |
| GO | 0003777 |
| GO | 0003824 |
| GO | 0005858 |
| GO | 0030175 |
| GO | 0003341 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft151_21a-0001 ID=EsuBft151_21a-0001|Name=EsuBft151_21a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=306bp|location=Sequence derived from alignment at Scaffold_392:308602..310147- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGACCATAGCCGCGTACCAGACGATGTACGAGTCTAGCATTGCCTTCGG
CATCCGGAAGGCGCTCATCGCTGAGCAGCGCAAAGCAGAAATGGAGGCAA
AGATCCGGCAGTTGCAGGAAGACAAAGCCGACCTAGAGCGCCAGGTGACA
GAGCTCAGCGCCAAGTGCGAGCAGGTCAAACCACGGGAGGCGGAAAGACG
CGCGGCCGACGAGAAGAAGCACAGCGCGGAGGTGGATCAGCTCAAGCGCA
CGAACGAGCAGCTCAAGACAACCCTGGAGCAAATGCTCTCGGCTCCCAAG
AAGTAA back to topprotein sequence of EsuBft151_21a-0001 >EsuBft151_21 ID=EsuBft151_21|Name=EsuBft151_21a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=101bp
MTIAAYQTMYESSIAFGIRKALIAEQRKAEMEAKIRQLQEDKADLERQVT
ELSAKCEQVKPREAERRAADEKKHSAEVDQLKRTNEQLKTTLEQMLSAPK
K back to topmRNA from alignment at Scaffold_392:308602..310147- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft151_21a-0001 ID=EsuBft151_21a-0001|Name=EsuBft151_21a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1546bp|location=Sequence derived from alignment at Scaffold_392:308602..310147- (Ectocarpus subulatus male Bft15b)
ATGACCATAGCCGCGTACCAGACGATGTACGAGTCTAGCATTGCCTTCGG
CATCCGGAAGGCGCTCATCGCTGAGCAGCGCAAAGCAGAAATGGAGGCAA
AGGTACTGTATGAACGAGTTGCTGCATCCATAGCCGAAGGCATTTTTGTT
CGTTTCTTCCCTTTCTGTTTGGCTCCTTTCGATCGGTCGTGCTAACCACT
CGCTGTAGTACGTAAGGTCTGACGATCGGAACCACGGATGGAATACAACG
AGTTCCTTTGAGAGTATTGCGCAAGTTATTAAGATGTTTGTTGAGAGGTT
TCTATGTGACTGAGTGAACTTGTATGCATCGTGTTCTTGTAGGTTCCCAA
ACCTTCGAGCAAGATCATGTGTTATGGAACACATACGCCAGGAATATGCA
GGACGCTTGTTGAAAATAATGTGAACCGAAGAGAGGGGGCACAAGATTCG
GCCGCTGTGAGGAAATGCATCAGACGCATGACCAATTGTTTCCATTCCGG
ACCGATTGTTTCCATTCCGACCGTGGTGCGTGCTGCAGTTGGTTTCAAAG
CCGTTTGATGGTATCTGTGTGTCCCTTGAAAGAGTTAACCTGACGGGCGT
TCGATCTACTTGTTTACTTCGCTGTGGTTACAGATCCGGCAGTTGCAGGA
AGACAAAGCCGACCTAGAGCGCCAGGTGACAGAGCTCAGCGCCAAGTGCG
AGCAGGTCAAACCACGGGAGGCGGAAAGGTACGAAGAAGACATACGAAGT
CGCTTTAGTAGTAGTGCGATAGAGGTACAGTAGCTGGCGCCGTCAGAAAC
GAAAAAATGTTGACGTTGTGGCTTCGAGTATCACTCACTCTGTATTCGGA
TATTGGAGCACTCTCTGGTTGGTTCTTGAACACGCGTTTCCTTCATAAAA
CACGATTCTGGCACCCCGGCCAACCGACCGAGTAAATCGGGGATCGATGT
TGTCTTTTATCCCGTCACAGTACGACCTTGAGGGAGAGTGTTTTCGCATC
TTCAACAACCTCCCGACGAGTGAAGTATGGTGGATGAACTCCACCCACAA
AAAATGCCGTTTGATCTCTCCTTCATCTACCACAGCGAACGTATGGTGTG
ATGGGTCCGTCCGAACGTCGGTCAGCGCAAGCTATATGTTCCGAGTCGAT
TCGGGTCGTCTCCCGTGTTGTGCAGAAACGCCAAGGAACTCTCACGAACG
AGCTTACTTCTGAGTTGGAACCATTACGCAGAGAAGATCTAGGCGATGCT
CTCACGGAACCCTGCGGCCAGGTCAACGCGCATAATATACGCGGGGACTG
CATCTCTCCCGGTCGCACTCCAGCGCCCCCCCCCCTCAATCACTCTGCTT
TCGGACTGTCAACCTTGCACCCCCCCTCGCTCCGCGATGATACTGCCGTT
CTGTGTTCGTGCCCGACACGGTGAACGGCACGCCCAGACGCGCGGCCGAC
GAGAAGAAGCACAGCGCGGAGGTGGATCAGCTCAAGCGCACGAACGAGCA
GCTCAAGACAACCCTGGAGCAAATGCTCTCGGCTCCCAAGAAGTAA back to topCoding sequence (CDS) from alignment at Scaffold_392:308602..310147- >EsuBft151_21a-0001 ID=EsuBft151_21a-0001|Name=EsuBft151_21a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=306bp|location=Sequence derived from alignment at Scaffold_392:308602..310147- (Ectocarpus subulatus male Bft15b)
ATGACCATAGCCGCGTACCAGACGATGTACGAGTCTAGCATTGCCTTCGG
CATCCGGAAGGCGCTCATCGCTGAGCAGCGCAAAGCAGAAATGGAGGCAA
AGATCCGGCAGTTGCAGGAAGACAAAGCCGACCTAGAGCGCCAGGTGACA
GAGCTCAGCGCCAAGTGCGAGCAGGTCAAACCACGGGAGGCGGAAAGACG
CGCGGCCGACGAGAAGAAGCACAGCGCGGAGGTGGATCAGCTCAAGCGCA
CGAACGAGCAGCTCAAGACAACCCTGGAGCAAATGCTCTCGGCTCCCAAG
AAGTAA back to top
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