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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 2880.D8LS56 |
| ProteomeId | EsuBft151_20 |
| Protein domains | SSF68906 |
| Protein domains | SSF57850 |
| Protein domains | Coil |
| Protein domains | PTHR22763 |
| Protein domains | IPR001841 |
| Protein domains | IPR013083 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | e3 ubiquitin-protein ligase ring1-like os:arabidopsis thaliana gn:at3g19950 pe:1 sv:1 [Automatic annotation] |
| Nb exon | 5 |
| Max annot lvl | 2759|Eukaryota |
| Length | 2286 |
| Hectar predicted targeting category | other localisation |
| Evalue | 4.59e-185 |
| EggNOG OGs | KOG0800@1|root,KOG0800@2759|Eukaryota |
| Ec32 ortholog description | Zinc finger, RING/FYVE/PHD-type |
| Ec32 ortholog | Ec-12_004750.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | ubiquitin-protein transferase activity |
| COG category | O |
Cross References
External references for this mRNA
| Database | Accession |
| GO | 0004842 |
| GO | 0031227 |
| GO | 0070735 |
| GO | 0051865 |
| GO | 0005829 |
| EC | 6.3.2 |
| GO | 0008270 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft151_20a-0001 ID=EsuBft151_20a-0001|Name=EsuBft151_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2286bp|location=Sequence derived from alignment at Scaffold_392:303380..308367+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GCAGCAGCAGCAGCAGCATCAACAGCATCAACAGCAGGTTAACCTCCACC ACCCCCCGCCGGGCAACGGCGCTTCCCCTCAGGACATGCGAGCGCACGCG GCCGCCGTGGAGGAGCAACGCCGACGAGAACAGGAAGAGGAGCGAAGACA GCGGGGCCCTCCGCCAGCCAGCCGGATGGCTCTCAAGAACATACCGGAAG TCAAGATCGCAGCGCTCGACTTGGCAGAGGAGACCAATCGGTCCTGCAGC GTTTGCCTCGAGGACCACGAGCTAGGGGAGACGGTGGTCAAGCTTCCGTG CGCGCACATCTTCCACCGAGAGTGCGTGTGGGAGTGGCTGGAGCTGCACT GCACGTGTCCCGTGTGCCGCTTCGAGCTGGAGACGGAGGACGCCGGGTAC GAGAGGGAGAGGAGGTTGAGGATGCGGGGGCGGCGGCCGCGGTACCGACG GCAGGAGCTGGAGGGCCTCAGCATCCCCCAGGTCCGCAACCTCGCCCGAG GGCAGAACGTGAACATCGCGGGCTGCCTTGAGAAGGCGGACATCGTGCGG TGCCTCCTCGACTCCGGAACGATCGAAGTCGTGGAGTCCGAGATACCAAG CTACGACGCGGAAGAGCTGTCAAACATGGGGCTGCGGCAGCTCCGGTCCC TCATGCTGCAGGCCGGCATCGGTACCGAAGGCTGCCTGGAGAAGGCCGAC CTGCTGGACCGCATCGTTTCCTCCCGCCTCGTAACCGTCACGCACGGCGA GGCAGTTCCGCCGCCGGCCCCGCCGGCCCCGCCGTCCTTCGCCAACCGGG GGGGTAGTGGTGGGGGCTCCGCAGCGCGACAAGCACCTGAACGAGGGGCG ACGGCGGGCGCCGGGGCGGCGGCAGCAGCACCGGCAAGAGGACCGGGAGG AGTAGGAGAGAGGAGATGGGCAGAACCAAACTCTAACTCTTTTTCCCGGG CCGGGATAAGACCATGGTGGTGGCGGGCCGGGCGGAGGGGCGGGGGCGGA GGCGGCAGTGCGGAAAGGGCGGCGACCCAGGCGGGGGCGGGGGCGGGGGC GACTGGGCCGCCGCCACCACCGTCCCCACAACCGGGAGCAGCCGCAGCGG CAGCAGGGGCGGGGGCGGCGGCTGCGAGGCCCCTAGAGAGCATGTCGGTG AAGGAATTGAGGGAGATCACGAGCAGGCTAGGCGTCAGCACGGCGGGGTG CCTGGAGAAGCGAGATATGGTCGAGCGGATCAGAAGTTGCGGGAGGTATC GGGAGGCGGCAGGGGTTGGAAGACCATGACGGTGGCAGACAAGCAGGGAA CGATTGACGGCACACGTGTGTCTTGCACGTTTTTTGAAGGAGGTCACGTG TCCCGGAAGCCATGTGCCCGATGTTCGTTCTTGCATGTAGAAGAAGGCCC CTGTTGTGTGGGTGGCCTGGCGTACGTACATAGGTGGCGCCGTGCGTGGA AGTGCCAAAAGACTGAAGTGGTTCTTGAAGCATGGCGCGCGTGCGGGGTG CGATTGCTGCGGCTTGGTTTTGGCGATCGTGCTGGCACGCACGACGTTGT GCAACACTGGGGGGTCGACCCCCGGCGAGGCCCGACCTCCACTTGCCGTT GGGCCCCGCGTGGTCGTGGACACGTGCTATATCGTACCGGAGGGTGTGTA TTAGAGTGCGTTACGGTGTTCGCCTAGCCTCGAATACTTCGTGCGGTCGT CTTGAGGAGGGTACATGTTGGGTGAGAGCAAGGGATGCCGTTCCACGTTT TTTGCTCCCTTGGGGGATGATGCTTCTTGTGGGGACAATATTGATCGAGA GAAGAGCGCGGGTGCGACTGCTGTGTGCATCAGGAAAGCACGAGCGTGGG TGCCACGACTCTCTCTCGCGCGTGTGGGGAGTAGTTTCTGACGAAGAGAG CGTACCGGAAACAGAGCAGGGGGAAGTGGTGTGGGGACCACACTAGGTGC TGCTGTGCGGTTACTTGCCGCGCGCGGCAGATGTCGGTCGGTCGTGTCTG AAAAGAATTTCATGGTCCTCGACTATGCTTGTAGCTGACAGAATAGACTA CAGGTGGTGGTGGTGCGGGATTGAGTCGAGAAGACCAGGTTCTACTTTTG CTTTGTGAACCAAACAGATGCGAGTCTGTGCCGTCGCCGTTATCCCTTTC GTCGTTTTCTCTTGGTCAGCATAATGAAAATGTCTTTCTTTAGGCCTTTT TGCTTTGGTTAATATGAGGAGACCATGCATTATTATGGACGTCGCGTCGT CATCCCGTTGTTCTTGGGAGTACAAGACTGAAAAGG back to topprotein sequence of EsuBft151_20a-0001 >EsuBft151_20 ID=EsuBft151_20|Name=EsuBft151_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=397bp
MRAHAAAVEEQRRREQEEERRQRGPPPASRMALKNIPEVKIAALDLAEET NRSCSVCLEDHELGETVVKLPCAHIFHRECVWEWLELHCTCPVCRFELET EDAGYERERRLRMRGRRPRYRRQELEGLSIPQVRNLARGQNVNIAGCLEK ADIVRCLLDSGTIEVVESEIPSYDAEELSNMGLRQLRSLMLQAGIGTEGC LEKADLLDRIVSSRLVTVTHGEAVPPPAPPAPPSFANRGGSGGGSAARQA PERGATAGAGAAAAAPARGPGGVGERRWAEPNSNSFSRAGIRPWWWRAGR RGGGGGGSAERAATQAGAGAGATGPPPPPSPQPGAAAAAAGAGAAAARPL ESMSVKELREITSRLGVSTAGCLEKRDMVERIRSCGRYREAAGVGRP back to topmRNA from alignment at Scaffold_392:303380..308367+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft151_20a-0001 ID=EsuBft151_20a-0001|Name=EsuBft151_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4988bp|location=Sequence derived from alignment at Scaffold_392:303380..308367+ (Ectocarpus subulatus male Bft15b) GCAGCAGCAGCAGCAGCATCAACAGCATCAACAGCAGGTTAACCTCCACC
ACCCCCCGCCGGGCAACGGCGCTTCCCCTCAGGACATGCGAGCGCACGCG
GCCGCCGTGGAGGAGCAACGCCGACGGTGGGTTTAAATGCTTTCTCATTC
TCTGCTTTGCTTGCTTAGCCTAGCCCCCGTTCGTAGTCGTGGTGGTCCCC
CGCCTTGAGACCTGCTTGGTGGGCAAGTCGTTCCCGTGTCCTTGAGTGTC
CACGGGGGCTGCTGCCATCCTGGATGTTCTCTTTGGCCGCGCGGAGTCTG
ATTGATTGCCGGACCATTATTTGTGGTAGCAGTCTCTCGCCTGGAAGTTG
ATGTATGGTCAACCTGGTGGCGATCACCCTGCTCTACCGGTGGTGTACAG
CAGTAGCCCCGCCTTGAACAGGTGGTTGGAAGGGAAGGTTTGAAGGGCTT
GTAGGTCTACTCGCGGCATGGGACGTAAGCAGGGGGTTATTTTGCCGGCC
CTGAAAGGTTTCTGACCCCGCGTAGCCCACGCAGTACAACTGGCGAAGTA
ATGGTGCCATCGGCTGAGTAGCGCCCAATGGAAGAGGCCGGGAGTGGGTG
GGCGCCGATTAGCCACACTACCGTCGATCGTGGTGAAGAGGGAAAGAGAG
ATTGAGAGGGGAGCGAGAGAGAGGAGAGGGAGAGAGAGAGAAAGGCGTGG
TAGCGATGTATGGCGAGCGTGGCGAAGAGAGAACGCGGGGGAAAGAGAGA
TAAAGAAGGCGAGGGTACCAAGAGACCAATCGCCGGTGTGTGGTTGCAAG
TATTTGTGGTAGTAATCTAATTTCTAATCCTTGTTTCCCCCGCCCCCGCA
CGCACGCGCACGCACCCGTTCCCCCGCTTCTTCTCGTCCAACCTGGATGA
CCCAAAAAACCAACAACACCACCCCACACCATTGCCAACAGAGAACAGGA
AGAGGAGCGAAGACAGCGGGGCCCTCCGCCAGCCAGCCGGATGGCTCTCA
AGAACATACCGGAAGTCAAGGTGAGCGTGTAACTTCGACGGGGGGTGGGG
GCGGCTGGACGGAAGAGGCGGGCGGAATGGAAAAGGCAGGGGGCCTGGTT
CAAGGGGCCAGAATCCGACATGCGGAAGCAGAAACAGCAGCCACACGAAA
AGCGATGAAAAGCGGAAGCAATACAAGAAAGAAAATCAAAGCACCGAGGG
CGCAGAAGAAGCCCAATTGCAGCGCATGTCTACGGCGGCGCCTTCTGTTC
TGACGCCTCCTGAGATCGGTGTTGCTGCTGGTGTGGGTGCACGCTCGGCT
GGGGCGAGTCGCGCGGGACGATAATGATGACTTGCCGCCAATCCGGCATT
CTACAAGTTTTGTTTGGCGTTGTTCTGTGCGGCTCGTTGCGAAGATCTGG
CAAGAAGCACAAGCCAACGGAATGAGTGATCCGATGCGTCTTTTACGTGT
CTTTCGCATGCGCGGACCCGAGGTCGATTTGTCCCGACCTTTGGTCGAGC
GAGGGCCCGCGAGGGAGTGTGTGCGTCTAGTGAGTGAAGTCAGTCGCCCG
TGCTTTTGGGCTTGGTCTTGACTCAGTCATCGCGCCGTGTCCGTGTTCGT
TGATGCTTGCGTTTGCGTTTGTTTTGCTCGTCCGCAACTTGCTGTGTTGA
TGGGGTTGTCTCGTATTGACTCTCTTTTTGTCGTTGTGGTCTTTCTTTTG
ACACACACTTTTTTTTTTTTTCATCGCCTTGAAACGGGCCGCGCGCGGCA
GATCGCAGCGCTCGACTTGGCAGAGGAGACCAATCGGTCCTGCAGCGTTT
GCCTCGAGGACCACGAGCTAGGGGAGACGGTGGTCAAGCTTCCGTGCGCG
CACATCTTCCACCGAGGTGTGTTGTGGTGTATTTATTTTACTAGTAGCAT
CGATTGCGATGAGAAAATGTCAGTCTCGGAGCAGCTGAAAACAAAGATAG
TTGTTGACGCCATGCTCTGGGACCCCTGGAGGAGGTGTGCTTCGTGCTCT
GGGCTTGTGCTTGTGCTTGTGCTCGTGTTGGTGTTGGTGGAGACACATGT
ACGCGACGCATACTCTTTTCTTCCGCACCGCTCTCCAAGGCACTGCATTG
CTGGGCACTGCTGCAGACAGCGCGGGAATAAGAGCGGTGCCCCTCGGGGC
GAGGAAAAGGGAATCAGACGGATGTATGGGTTCGATGTATATGAGACGAT
GCCCTTTCTCTAGATGTTGCTCTCAGGTCGCGTCGCAGAGAGCGGCTGCG
CTACGTCGACCGTAAAGTCGAGGTAGTTCCTGCGATAACGCGGCTTGAGT
CACGTACCAGCGCCATCCGACAATCGTCTCCGTCTCTTTTTCTCTCGAAA
ATTTGCCGTCCGCCCGTCCTTCCCGCGTCACACTTTGCTGCAGAGTGCGT
GTGGGAGTGGCTGGAGCTGCACTGCACGTGTCCCGTGTGCCGCTTCGAGC
TGGAGACGGAGGACGCCGGGTACGAGAGGGAGAGGAGGTTGAGGATGCGG
GGGCGGCGGCCGCGGTACCGACGGCAGGAGCTGGAGGGCCTCAGCATCCC
CCAGGTCCGCAACCTCGCCCGAGGGCAGAACGTGAACATCGCGGGCTGCC
TTGAGAAGGCGGACATCGTGCGGTGCCTCCTCGACTCCGGAACGGTGAGA
GAGAGAGGGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGAGAGAG
AGAAGGAGAGACAGAGAATGAGCGAGAGAGAGCAGAGTCAGTCGCTACGC
GCTCGACGCCGCAGCAGGTGTTGGCTGCCGACACGCCCCCTGTATGTTAC
AGTTCACTTATACCTGGGACCTGGGACCTGAGACCATCCCCAGCTACAAC
TGGAATTTGTGACCTAACATTGATCCGACAAACATGTGCCGAATAGGCTT
CCCGAGATGCTTTTTTTTTTGCCACCTCCGTTTTGTGAGATGACGACGTG
GCTCTTGTGTCCCTGGAGACGAAAAGCTGATCCGTTATGTTCCGCCTGAT
CCCGCCCACCCACACCCGGAAAGGATGCGTCTTGCTCATTTTTTCTGCGG
CGGGAGGAGCGCCTGAGGCCAAACTCGCTCGTGTTTTGGACATGATCACT
CCGTGATTTGCAGCATCGTTTTTTTTTTTTTTTGGAGGGGGTGTTCCGTC
CGTTGTAATTCTACTCACGTACGTCCAAAAACGCCCTCTCATTGGTGAAC
ACGACACAAAATATCAATGACAGATCGAAGTCGTGGAGTCCGAGATACCA
AGCTACGACGCGGAAGAGCTGTCAAACATGGGGCTGCGGCAGCTCCGGTC
CCTCATGCTGCAGGCCGGCATCGGTACCGAAGGCTGCCTGGAGAAGGCCG
ACCTGCTGGACCGCATCGTTTCCTCCCGCCTCGTAACCGTCACGCACGGC
GAGGCAGTTCCGCCGCCGGCCCCGCCGGCCCCGCCGTCCTTCGCCAACCG
GGGGGGTAGTGGTGGGGGCTCCGCAGCGCGACAAGCACCTGAACGAGGGG
CGACGGCGGGCGCCGGGGCGGCGGCAGCAGCACCGGCAAGAGGACCGGGA
GGAGTAGGAGAGAGGAGATGGGCAGAACCAAACTCTAACTCTTTTTCCCG
GGCCGGGATAAGACCATGGTGGTGGCGGGCCGGGCGGAGGGGCGGGGGCG
GAGGCGGCAGTGCGGAAAGGGCGGCGACCCAGGCGGGGGCGGGGGCGGGG
GCGACTGGGCCGCCGCCACCACCGTCCCCACAACCGGGAGCAGCCGCAGC
GGCAGCAGGGGCGGGGGCGGCGGCTGCGAGGCCCCTAGAGAGCATGTCGG
TGAAGGAATTGAGGGAGATCACGAGCAGGCTAGGCGTCAGCACGGCGGGG
TGCCTGGAGAAGCGAGATATGGTCGAGCGGATCAGAAGTTGCGGGAGGTA
TCGGGAGGCGGCAGGGGTTGGAAGACCATGACGGTGGCAGACAAGCAGGG
AACGATTGACGGCACACGTGTGTCTTGCACGTTTTTTGAAGGAGGTCACG
TGTCCCGGAAGCCATGTGCCCGATGTTCGTTCTTGCATGTAGAAGAAGGC
CCCTGTTGTGTGGGTGGCCTGGCGTACGTACATAGGTGGCGCCGTGCGTG
GAAGTGCCAAAAGACTGAAGTGGTTCTTGAAGCATGGCGCGCGTGCGGGG
TGCGATTGCTGCGGCTTGGTTTTGGCGATCGTGCTGGCACGCACGACGTT
GTGCAACACTGGGGGGTCGACCCCCGGCGAGGCCCGACCTCCACTTGCCG
TTGGGCCCCGCGTGGTCGTGGACACGTGCTATATCGTACCGGAGGGTGTG
TATTAGAGTGCGTTACGGTGTTCGCCTAGCCTCGAATACTTCGTGCGGTC
GTCTTGAGGAGGGTACATGTTGGGTGAGAGCAAGGGATGCCGTTCCACGT
TTTTTGCTCCCTTGGGGGATGATGCTTCTTGTGGGGACAATATTGATCGA
GAGAAGAGCGCGGGTGCGACTGCTGTGTGCATCAGGAAAGCACGAGCGTG
GGTGCCACGACTCTCTCTCGCGCGTGTGGGGAGTAGTTTCTGACGAAGAG
AGCGTACCGGAAACAGAGCAGGGGGAAGTGGTGTGGGGACCACACTAGGT
GCTGCTGTGCGGTTACTTGCCGCGCGCGGCAGATGTCGGTCGGTCGTGTC
TGAAAAGAATTTCATGGTCCTCGACTATGCTTGTAGCTGACAGAATAGAC
TACAGGTGGTGGTGGTGCGGGATTGAGTCGAGAAGACCAGGTTCTACTTT
TGCTTTGTGAACCAAACAGATGCGAGTCTGTGCCGTCGCCGTTATCCCTT
TCGTCGTTTTCTCTTGGTCAGCATAATGAAAATGTCTTTCTTTAGGCCTT
TTTGCTTTGGTTAATATGAGGAGACCATGCATTATTATGGACGTCGCGTC
GTCATCCCGTTGTTCTTGGGAGTACAAGACTGAAAAGG back to topCoding sequence (CDS) from alignment at Scaffold_392:303380..308367+ >EsuBft151_20a-0001 ID=EsuBft151_20a-0001|Name=EsuBft151_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1194bp|location=Sequence derived from alignment at Scaffold_392:303380..308367+ (Ectocarpus subulatus male Bft15b) ATGCGAGCGCACGCGGCCGCCGTGGAGGAGCAACGCCGACGAGAACAGGA AGAGGAGCGAAGACAGCGGGGCCCTCCGCCAGCCAGCCGGATGGCTCTCA AGAACATACCGGAAGTCAAGATCGCAGCGCTCGACTTGGCAGAGGAGACC AATCGGTCCTGCAGCGTTTGCCTCGAGGACCACGAGCTAGGGGAGACGGT GGTCAAGCTTCCGTGCGCGCACATCTTCCACCGAGAGTGCGTGTGGGAGT GGCTGGAGCTGCACTGCACGTGTCCCGTGTGCCGCTTCGAGCTGGAGACG GAGGACGCCGGGTACGAGAGGGAGAGGAGGTTGAGGATGCGGGGGCGGCG GCCGCGGTACCGACGGCAGGAGCTGGAGGGCCTCAGCATCCCCCAGGTCC GCAACCTCGCCCGAGGGCAGAACGTGAACATCGCGGGCTGCCTTGAGAAG GCGGACATCGTGCGGTGCCTCCTCGACTCCGGAACGATCGAAGTCGTGGA GTCCGAGATACCAAGCTACGACGCGGAAGAGCTGTCAAACATGGGGCTGC GGCAGCTCCGGTCCCTCATGCTGCAGGCCGGCATCGGTACCGAAGGCTGC CTGGAGAAGGCCGACCTGCTGGACCGCATCGTTTCCTCCCGCCTCGTAAC CGTCACGCACGGCGAGGCAGTTCCGCCGCCGGCCCCGCCGGCCCCGCCGT CCTTCGCCAACCGGGGGGGTAGTGGTGGGGGCTCCGCAGCGCGACAAGCA CCTGAACGAGGGGCGACGGCGGGCGCCGGGGCGGCGGCAGCAGCACCGGC AAGAGGACCGGGAGGAGTAGGAGAGAGGAGATGGGCAGAACCAAACTCTA ACTCTTTTTCCCGGGCCGGGATAAGACCATGGTGGTGGCGGGCCGGGCGG AGGGGCGGGGGCGGAGGCGGCAGTGCGGAAAGGGCGGCGACCCAGGCGGG GGCGGGGGCGGGGGCGACTGGGCCGCCGCCACCACCGTCCCCACAACCGG GAGCAGCCGCAGCGGCAGCAGGGGCGGGGGCGGCGGCTGCGAGGCCCCTA GAGAGCATGTCGGTGAAGGAATTGAGGGAGATCACGAGCAGGCTAGGCGT CAGCACGGCGGGGTGCCTGGAGAAGCGAGATATGGTCGAGCGGATCAGAA GTTGCGGGAGGTATCGGGAGGCGGCAGGGGTTGGAAGACCATGA back to top
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