EsuBft151_18a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft151_18a-0001
Unique NameEsuBft151_18a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_392contigScaffold_392:290701..291527 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft151_18
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length78
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_004740.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft151_18aEsuBft151_18aEctocarpus subulatus male Bft15bgeneScaffold_392 290701..291527 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft151_18a-0001-exonagat-exon-79098Ectocarpus subulatus male Bft15bexonScaffold_392 290701..290706 +
EsuBft151_18a-0001-exonEsuBft151_18a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_392 290748..291527 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft151_18a-0001-cdsEsuBft151_18a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_392 290701..290706 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft151_18a-0001EsuBft151_18Ectocarpus subulatus male Bft15bpolypeptideScaffold_392 290701..291527 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft151_18a-0001 ID=EsuBft151_18a-0001|Name=EsuBft151_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=786bp|location=Sequence derived from alignment at Scaffold_392:290701..291527+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCAAGCAGAGGAGAAGATCGAAAATAGCTGCAATGGTGAGGATGG
CCCGCGAGACAGTTACAGCAGCCAACAAAGCGGGGCTCAACAGGGTGGCG
ACGAGTTAGGCCATCAGCTCGCCGGATCGGCTTCCTCGTGGAGGGGTTCG
GACGAGGAGATCATCGGTGGAAAATCGAGCGAGAACATCGAAGCAGCAGC
AGCAACTAACGCGGAAAGGGAAGGGATCGTGAGGGCAGGAACATCCTCAA
ACAGTTCTGATGCTGGACGATGGTCTGATGCCGTTGAGACCACGAGCGGT
GATAATGGTGCAACGAAAGCTAGCATCACCGTCGGTCACAACAGCAGCAG
TGGCATCAGCATAGGAGAGGAGGAAGAACTGGAACAAGAACAAGAAGAGC
AAGTGATTGCTAGAAAAGCAGACGTTGAGCTGTCCCCAGCCGCATCGAAC
AGCGGCAGGAGTGGCGACCCTCGCAGTGATGGGGTAGAACCAGGAGCAGA
GGTTCCCCGTAGCAGCATTGACGGAAGGGCAACGGCGCCTCCACTACAAG
TGGATGGGGACATCACCAACAACAACAACACCAGCGATACTTACTCTTCT
TCCTCTCAAGCCATCATCGAAGATGGCCTCGATCGGGGTGAATCAGCTGG
CGAGGCAGACACAGATAGGCTTCTTTTCGATGGAGACGGGGAGGAGGAGA
ACGAGAAGCTGGGAGGTGAAAATGACGCTGCACCTAGCGAGTACGGAGAT
GACTTCGACGACGATTTCGACGACGAGGAAGGTTAA
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protein sequence of EsuBft151_18a-0001

>EsuBft151_18 ID=EsuBft151_18|Name=EsuBft151_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=261bp
MKQAEEKIENSCNGEDGPRDSYSSQQSGAQQGGDELGHQLAGSASSWRGS
DEEIIGGKSSENIEAAAATNAEREGIVRAGTSSNSSDAGRWSDAVETTSG
DNGATKASITVGHNSSSGISIGEEEELEQEQEEQVIARKADVELSPAASN
SGRSGDPRSDGVEPGAEVPRSSIDGRATAPPLQVDGDITNNNNTSDTYSS
SSQAIIEDGLDRGESAGEADTDRLLFDGDGEEENEKLGGENDAAPSEYGD
DFDDDFDDEEG
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mRNA from alignment at Scaffold_392:290701..291527+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft151_18a-0001 ID=EsuBft151_18a-0001|Name=EsuBft151_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=827bp|location=Sequence derived from alignment at Scaffold_392:290701..291527+ (Ectocarpus subulatus male Bft15b)
ATGAAGGTGAAGACGACACCAGCCTAACCACAAAACGTCATCATCAGCAA
GCAGAGGAGAAGATCGAAAATAGCTGCAATGGTGAGGATGGCCCGCGAGA
CAGTTACAGCAGCCAACAAAGCGGGGCTCAACAGGGTGGCGACGAGTTAG
GCCATCAGCTCGCCGGATCGGCTTCCTCGTGGAGGGGTTCGGACGAGGAG
ATCATCGGTGGAAAATCGAGCGAGAACATCGAAGCAGCAGCAGCAACTAA
CGCGGAAAGGGAAGGGATCGTGAGGGCAGGAACATCCTCAAACAGTTCTG
ATGCTGGACGATGGTCTGATGCCGTTGAGACCACGAGCGGTGATAATGGT
GCAACGAAAGCTAGCATCACCGTCGGTCACAACAGCAGCAGTGGCATCAG
CATAGGAGAGGAGGAAGAACTGGAACAAGAACAAGAAGAGCAAGTGATTG
CTAGAAAAGCAGACGTTGAGCTGTCCCCAGCCGCATCGAACAGCGGCAGG
AGTGGCGACCCTCGCAGTGATGGGGTAGAACCAGGAGCAGAGGTTCCCCG
TAGCAGCATTGACGGAAGGGCAACGGCGCCTCCACTACAAGTGGATGGGG
ACATCACCAACAACAACAACACCAGCGATACTTACTCTTCTTCCTCTCAA
GCCATCATCGAAGATGGCCTCGATCGGGGTGAATCAGCTGGCGAGGCAGA
CACAGATAGGCTTCTTTTCGATGGAGACGGGGAGGAGGAGAACGAGAAGC
TGGGAGGTGAAAATGACGCTGCACCTAGCGAGTACGGAGATGACTTCGAC
GACGATTTCGACGACGAGGAAGGTTAA
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Coding sequence (CDS) from alignment at Scaffold_392:290701..291527+

>EsuBft151_18a-0001 ID=EsuBft151_18a-0001|Name=EsuBft151_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=786bp|location=Sequence derived from alignment at Scaffold_392:290701..291527+ (Ectocarpus subulatus male Bft15b)
ATGAAGCAAGCAGAGGAGAAGATCGAAAATAGCTGCAATGGTGAGGATGG
CCCGCGAGACAGTTACAGCAGCCAACAAAGCGGGGCTCAACAGGGTGGCG
ACGAGTTAGGCCATCAGCTCGCCGGATCGGCTTCCTCGTGGAGGGGTTCG
GACGAGGAGATCATCGGTGGAAAATCGAGCGAGAACATCGAAGCAGCAGC
AGCAACTAACGCGGAAAGGGAAGGGATCGTGAGGGCAGGAACATCCTCAA
ACAGTTCTGATGCTGGACGATGGTCTGATGCCGTTGAGACCACGAGCGGT
GATAATGGTGCAACGAAAGCTAGCATCACCGTCGGTCACAACAGCAGCAG
TGGCATCAGCATAGGAGAGGAGGAAGAACTGGAACAAGAACAAGAAGAGC
AAGTGATTGCTAGAAAAGCAGACGTTGAGCTGTCCCCAGCCGCATCGAAC
AGCGGCAGGAGTGGCGACCCTCGCAGTGATGGGGTAGAACCAGGAGCAGA
GGTTCCCCGTAGCAGCATTGACGGAAGGGCAACGGCGCCTCCACTACAAG
TGGATGGGGACATCACCAACAACAACAACACCAGCGATACTTACTCTTCT
TCCTCTCAAGCCATCATCGAAGATGGCCTCGATCGGGGTGAATCAGCTGG
CGAGGCAGACACAGATAGGCTTCTTTTCGATGGAGACGGGGAGGAGGAGA
ACGAGAAGCTGGGAGGTGAAAATGACGCTGCACCTAGCGAGTACGGAGAT
GACTTCGACGACGATTTCGACGACGAGGAAGGTTAA
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