EsuBft151_15a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft151_15a-0001
Unique Name	EsuBft151_15a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_392	contig	Scaffold_392:262504..266611 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Status	Manually annotated
Seed ortholog	2880.D8LS61
ProteomeId	EsuBft151_15
Protein domains	CYTOPLASMIC_DOMAIN
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	PTHR24089
Protein domains	IPR023395
Protein domains	IPR018108
Protein domains	TRANSMEMBRANE
Owner	apollo_admin@sb-roscoff.fr
Note	solute carrier family 25 member 44 os:mus musculus gn:slc25a44 pe:2 sv:1 [Automatic annotation]
Nb exon	4
Max annot lvl	2759\|Eukaryota
Length	2608
Hectar predicted targeting category	other localisation
Evalue	8.69e-117
EggNOG OGs	KOG0765@1\|root,KOG0765@2759\|Eukaryota
Date last modified	2016-09-21
Date creation	2016-06-14
Preferred name	SLC25A44
KEGG ko	ko:K15121
KEGG TC	2.A.29
GOs	GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005743,GO:0006810,GO:0006839,GO:0008150,GO:0016020,GO:0016021,GO:0019866,GO:0019867,GO:0022857,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031306,GO:0031307,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0032592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0098573,GO:0098588,GO:0098805
Description	Mitochondrial substrate carrier family protein
Description	transmembrane transport
COG category	U
BRITE	ko00000,ko02000
Note	Groisillier A., annotator

Cross References

External references for this mRNA


Database	Accession
TCDB	2.A.29...
GO	0008514
GO	0003676
GO	0009536
GO	0005739
GO	0016021
GO	0044237
GO	0031967
GO	0003333

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft151_15a	EsuBft151_15a	Ectocarpus subulatus male Bft15b	gene	Scaffold_392 262504..266611 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft151_15a-0001	EsuBft151_15	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_392 262751..265150 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft151_15a-0001-exon	agat-exon-79091	Ectocarpus subulatus male Bft15b	exon	Scaffold_392 262504..262897 +
EsuBft151_15a-0001-exon	agat-exon-79090	Ectocarpus subulatus male Bft15b	exon	Scaffold_392 263195..263470 +
EsuBft151_15a-0001-exon	EsuBft151_15a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_392 264239..264462 +
EsuBft151_15a-0001-exon	agat-exon-79092	Ectocarpus subulatus male Bft15b	exon	Scaffold_392 264898..266611 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft151_15a-0001-exon	agat-five_prime_utr-2972	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_392 262504..262750 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft151_15a-0001-cds	EsuBft151_15a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_392 262751..262897 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft151_15a-0001-exon	agat-three_prime_utr-4556	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_392 265151..266611 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_392:262504..266611+
coding sequence from alignment at Scaffold_392:262504..266611+

spliced messenger RNA

>EsuBft151_15a-0001 ID=EsuBft151_15a-0001|Name=EsuBft151_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2608bp|location=Sequence derived from alignment at Scaffold_392:262504..266611+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AGGGCAGGCAAGGATGGGTGGGTTTGAAAGACACACGTACTGGGAGCAAG
AGAGAGGGCCTCTCGCAATTGTCCAAGCGTGTCCACCACACGAGGCTGGT
GCTATACATTCGGTGGATGTATTTTTGTTTTTTTATCGTGTTCGGGCGTA
CCCTTGACTGCTTTCTGCTCCCACCCAAGGCATATACAGGGAGACGGTTG
ACACGTGGAATAGCCTGGACAAGACAGTAGCTGTACTGGGGCATAAGATG
TTGGTTGAAAAGGCGGGAAGTGATTTCGATGGGATAGATAGGCTAGGAAA
AACGTACTTGAGCCACCTTTGGCAAGGCAGGAACGATTGGGCCATCGGTG
ATCGGTCCTGTGGGAACATTTCACCGTCCTCTGGGGGACGCGTGAGGATG
ATGGTCGATACTCCAAAGCGCGCTGCTAGCGCCGGCGGGGCGTCGGCAGG
AGCAGAAGGCGGCGCTACCGGCAACGGCAGTGGCTCTACTCACGGGGGGA
CGGTGCGAAATAGTGGGAGACGGGCGGGCGGGGGGGGGGCGGGGGCGGGG
GGGAGCGGACACAGCGTGACCGCGCGGGAAGTTGCGAGGCAGGTCTACGG
CGAGAGCGGGTTAAGGGGTTTCTACAGAGGGTTCGGCATTTCTGTGCTGC
AGTTCGCGCCGACGTCGGCGATCTGGTGGGCCGCGTACGGTGTGTACAGC
CGGGCGTTCGTGCGCGCGCTGGGGAACCTTCCCGAGCCGGTCCCGAAGCT
GACGGCGCAGCAGCGGCAGGTCGGGGGCCAGGCGGCGGCGGGGTTCTGCA
CGGGGATGACGACGGTGCTGTTGACCAACCCCCTGGACGTGCTGAGGACG
AGGCTCCAGGTGGAGGGGCGCCGCGGCGACGATCGAACGATAGTGTCGGA
GTACCGAATTTTGATGGCGGAGAGCGGGCCGAGGGGGCTGATGAAGGGGC
TCGGGCCGCGGATACTGGCGGTGGCCCCGGCGTCCGTCCTCATCGTCAGC
GTCTACGAGCTCATCAAGCGCTTGAGCAGAAAAACTCCGCTCGCGCCACC
GCCCGCGGAGACCCCGCATTTTCCGTCACAACCGCCGGCCACCGCGAGGA
CGGCCACCTTTGCTACTACTGCTGTCACAGACCCAAATCACCGCTGACCC
CGCACAAAGTTGTTATCGTCTTTTTTGTGTGTGTGTGTGTCTCGGCGTGA
CGCGTGCATGTGAATGTACCTCTTTATGAGGTCACCGGTAGCGGGGAGGA
CGGGGGCGAGAGGGTGAAAATTTTGCTGGTGTTTTTACTTAAACCTCGGG
TGTGCCGTCCGTCTTTCGTGCTCGCGGGCGCGCGCGCGTGCTTCGTGTGC
AATTTTTGTGTTCCATTTTTGTGAGCATGTCTTCTTGGGAGTGGTCCTAT
GGCTTCCCCTCCTCTGTTTTCTTTCCTGTGCAGTAGTTTGTTGGAACTAG
CGGGCCGAGAATTGTCCGCGGTCGTGTTTCGCGCCTGTTCTTGGTTGCCC
CCCACCCGCCTTTCTTGCTAGGTGCTGGTACTGTACCCGCACTTTTCCAG
CCTGCGAGACATCACCTCGTAGTTGACACACGACGATGTATTCAAGGCGT
GCTGTTCCCAACTGCGTGGTTTCGCTTTCTTCATTTCGGTTCGTCTCTCC
AACAGTTTACAACAAATAAATCTGTATCTTGAAGGAGAGGTACAGACAAG
TGTACTAAATGCTGTATTTTCACACAAGTGTGCCTGTGAGTTGGGCGAAT
TTTCGGTTAGCTTTACAGCGGTGCAAATGTGTTTTTTTTTTAACGATTAA
CGTAAAATAACACACGTGGGACAATGGATGCGGGGGAAGAGGTGGAAGGG
AGGGAGCAGGGGGGCTTTCTGGCCAGTGCAGATTGTTCCAATTTGGAAGC
GCGGCACTAGGTCACGCTTACTCTTGTGTGTTGGAGCAGAACTCTTCTGG
TAATCTTGGTCGGGCGTCGTTACGAACAGTTGTAATTATTCGAAAAGAAC
GACCCAACCCGGCTGGAAGGACTTCTATGTGCATCTTAGCACCATCCCTT
CGTCCGGTAAGGACTGGCACACCAACATGCGGGGATTTGCTCCCAACGTA
GTCCCTCTCGCCGTCTTTCCCCCAAAAGTGCAAATTTGGTATCCGCTGCG
GCGAGCCCCCCGACTATTTNACAGTTCTTCCAGCAAAAGCTGAGCGCTCT
TTTACTTCGTTACAATCGAGAGAACCTTTCGCTGTCCAATCTGCCGTCAT
GCTGCACCGCGTGTGTCCCTGTGAAGGACACCGAAGAAGCCTTTTCTACT
TTTTCGATCAGTGGCAGCAAACTCGTTGTTTCAAGGACTTGCCATCGTTT
TCTCGCTGGCTTCTTGCGCCCCAAAAGTCGTCCACACCACCCCCTTCCTC
GAGTATTCTCGGCTCCTCTCCCGGACACCTCCACCTACCATCATTTTTCC
CTCTGAAAATCAACGGGAATTCCACGCTTGCTGCTGCTGCTAAACCGTTG
TCGGCGACTGGGGTGGTGGTGTGATCACGACGATTTCTCGATTCGTTCAC
ACAAATAAAACATCCAACAACGAACGACGACTTCGACGCCGACAACTAAG
GCCACTCG

protein sequence of EsuBft151_15a-0001

>EsuBft151_15 ID=EsuBft151_15|Name=EsuBft151_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=299bp
MLVEKAGSDFDGIDRLGKTYLSHLWQGRNDWAIGDRSCGNISPSSGGRVR
MMVDTPKRAASAGGASAGAEGGATGNGSGSTHGGTVRNSGRRAGGGGAGA
GGSGHSVTAREVARQVYGESGLRGFYRGFGISVLQFAPTSAIWWAAYGVY
SRAFVRALGNLPEPVPKLTAQQRQVGGQAAAGFCTGMTTVLLTNPLDVLR
TRLQVEGRRGDDRTIVSEYRILMAESGPRGLMKGLGPRILAVAPASVLIV
SVYELIKRLSRKTPLAPPPAETPHFPSQPPATARTATFATTAVTDPNHR

mRNA from alignment at Scaffold_392:262504..266611+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft151_15a-0001 ID=EsuBft151_15a-0001|Name=EsuBft151_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4108bp|location=Sequence derived from alignment at Scaffold_392:262504..266611+ (Ectocarpus subulatus male Bft15b)
AGGGCAGGCAAGGATGGGTGGGTTTGAAAGACACACGTACTGGGAGCAAG
AGAGAGGGCCTCTCGCAATTGTCCAAGCGTGTCCACCACACGAGGCTGGT
GCTATACATTCGGTGGATGTATTTTTGTTTTTTTATCGTGTTCGGGCGTA
CCCTTGACTGCTTTCTGCTCCCACCCAAGGCATATACAGGGAGACGGTTG
ACACGTGGAATAGCCTGGACAAGACAGTAGCTGTACTGGGGCATAAGATG
TTGGTTGAAAAGGCGGGAAGTGATTTCGATGGGATAGATAGGCTAGGAAA
AACGTACTTGAGCCACCTTTGGCAAGGCAGGAACGATTGGGCCATCGGTG
ATCGGTCCTGTGGGAACATTTCACCGTCCTCTGGGGGACGCGTGGTAATG
GTCTATCGGCTAAGGCATGCAAAACAAATGAGTACGCCCCCCCCCCCNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCC
TCCCCAACCTCTGCGGTATAGATAGGGTACACGTCGGAAAAACATTTTTG
TTAGCCAGCTCTGGCAAACTATGAAGGAACAATGCTCCGTCCTCTCGAGG
ACGGGTAGTCAAAGGTCTTGACAACCTCGGCATGCAAACCATGAGCCCCC
CCCCCCTGGCCCAACCTCTTCGGGGTCTCTTTTCTTTCTAGAGGATGATG
GTCGATACTCCAAAGCGCGCTGCTAGCGCCGGCGGGGCGTCGGCAGGAGC
AGAAGGCGGCGCTACCGGCAACGGCAGTGGCTCTACTCACGGGGGGACGG
TGCGAAATAGTGGGAGACGGGCGGGCGGGGGGGGGGCGGGGGCGGGGGGG
AGCGGACACAGCGTGACCGCGCGGGAAGTTGCGAGGCAGGTCTACGGCGA
GAGCGGGTTAAGGGGTTTCTACAGAGGGTTCGGCATTTCTGTGCTGCAGT
TCGCGCCGACGTCGGCGGTGAGTTTCTTTCATGTTCTGTGTTGATGAGTC
TCGTTGGCTGGTGGTTGCGTGCTCCGAGAGAGTCTTCGGTGCGACCGCAA
GTATTGTGCTCTCGGTACCCTCGGTTCTTCGGTTGGTACGCTCGGAACCT
TCGGACCCTCTAGATTGCGGGTTCGAATCTCTCTTGGAGTGAAACTTAGC
GCGATGTTAGGCGTGGAAAGCGCGTGGTGCTTGATTCATGAGCAGAAACG
AAATAAGGGAACGATCCTGCTTGCTGAACTTTCCTCGCGTTAAGAATGAA
CGGTGAGCAATGTAAGAGGTGGAGAATACAACCAAAAAGCTGCAGTGTTT
ATCCTTCCTCCCGTGTGTGTCAACGTCAAAATGCGAACAGAGGGAGTCCC
TTTGTTGTGCCGGTTGAATAGTGCGGTAGCGATAGCCAATGCCCGCTACA
GTGCCGGTGTTGTCGGCGGGCACACACCGAATTTCGAAGTCATTGGCAAT
ACTTTGAATAGTGCCGGTCCGGTATAGTGCCGTTGAATTTTCTGGGTCCA
TACCGGCACTAAGTGGGAACCCCCTCTGTAACGAAGGGTGTAGAATGGCG
TTCGGAATATAGGTGGTACGAGAGCACAACAAGCAATAAGAGACACACAC
AGGTACATCCAGCGACCAAGGTATAGAAAAACAGGAATATCATAAGAACG
ACCTCTTCTTGGTACCCCTCCACTCCACCCCAACACCCCCGACATCTACT
CTGCCTGCCCCCCCCCGCTCCCTGGTTCTGTCCAGATCTGGTGGGCCGCG
TACGGTGTGTACAGCCGGGCGTTCGTGCGCGCGCTGGGGAACCTTCCCGA
GCCGGTCCCGAAGCTGACGGCGCAGCAGCGGCAGGTCGGGGGCCAGGCGG
CGGCGGGGTTCTGCACGGGGATGACGACGGTGCTGTTGACCAACCCCCTG
GACGTGCTGAGGACGAGGCTCCAGGTGGAGGGGCGCCGCGGCGACGATCG
AACGATAGTGTGAGTGTTGTACATACGGTAGCCTAAGTTTTGCTGCTGCT
GCTGCCGCTGCTGCTGTTGTTGTTGTCGTCGTTGTTGTTGTTGGCTGGTT
TGTGGTTACAAGAGGTGTGGGTATCTCGAGCGCGCGAAGTGATTTGTGAG
CAGTGTTTCGCGCAAAACCACCCAACGCTAGCGGGTACGTCGCAACCTTG
AATGAGGAGCATGGTTTCGGCGAGACACATCGTATTTTTTGCTACCTTCC
TTGCAACATGTTTGGATCTAGACGTTGGCGCTGACCACCTCCGTACACTC
ATATATGATGTCAAGGACACCCGCGCCCCCCACTCCCCGCTTGACTGAAC
ACGTTTTTCTGCCCTCTGCCTCTGTGTTTTGTGCCTCTGTGCCTTTGTTC
CTCTATGCCTAACGACACGAAACAACAACAATAAACAACGCTAGGTCGGA
GTACCGAATTTTGATGGCGGAGAGCGGGCCGAGGGGGCTGATGAAGGGGC
TCGGGCCGCGGATACTGGCGGTGGCCCCGGCGTCCGTCCTCATCGTCAGC
GTCTACGAGCTCATCAAGCGCTTGAGCAGAAAAACTCCGCTCGCGCCACC
GCCCGCGGAGACCCCGCATTTTCCGTCACAACCGCCGGCCACCGCGAGGA
CGGCCACCTTTGCTACTACTGCTGTCACAGACCCAAATCACCGCTGACCC
CGCACAAAGTTGTTATCGTCTTTTTTGTGTGTGTGTGTGTCTCGGCGTGA
CGCGTGCATGTGAATGTACCTCTTTATGAGGTCACCGGTAGCGGGGAGGA
CGGGGGCGAGAGGGTGAAAATTTTGCTGGTGTTTTTACTTAAACCTCGGG
TGTGCCGTCCGTCTTTCGTGCTCGCGGGCGCGCGCGCGTGCTTCGTGTGC
AATTTTTGTGTTCCATTTTTGTGAGCATGTCTTCTTGGGAGTGGTCCTAT
GGCTTCCCCTCCTCTGTTTTCTTTCCTGTGCAGTAGTTTGTTGGAACTAG
CGGGCCGAGAATTGTCCGCGGTCGTGTTTCGCGCCTGTTCTTGGTTGCCC
CCCACCCGCCTTTCTTGCTAGGTGCTGGTACTGTACCCGCACTTTTCCAG
CCTGCGAGACATCACCTCGTAGTTGACACACGACGATGTATTCAAGGCGT
GCTGTTCCCAACTGCGTGGTTTCGCTTTCTTCATTTCGGTTCGTCTCTCC
AACAGTTTACAACAAATAAATCTGTATCTTGAAGGAGAGGTACAGACAAG
TGTACTAAATGCTGTATTTTCACACAAGTGTGCCTGTGAGTTGGGCGAAT
TTTCGGTTAGCTTTACAGCGGTGCAAATGTGTTTTTTTTTTAACGATTAA
CGTAAAATAACACACGTGGGACAATGGATGCGGGGGAAGAGGTGGAAGGG
AGGGAGCAGGGGGGCTTTCTGGCCAGTGCAGATTGTTCCAATTTGGAAGC
GCGGCACTAGGTCACGCTTACTCTTGTGTGTTGGAGCAGAACTCTTCTGG
TAATCTTGGTCGGGCGTCGTTACGAACAGTTGTAATTATTCGAAAAGAAC
GACCCAACCCGGCTGGAAGGACTTCTATGTGCATCTTAGCACCATCCCTT
CGTCCGGTAAGGACTGGCACACCAACATGCGGGGATTTGCTCCCAACGTA
GTCCCTCTCGCCGTCTTTCCCCCAAAAGTGCAAATTTGGTATCCGCTGCG
GCGAGCCCCCCGACTATTTNACAGTTCTTCCAGCAAAAGCTGAGCGCTCT
TTTACTTCGTTACAATCGAGAGAACCTTTCGCTGTCCAATCTGCCGTCAT
GCTGCACCGCGTGTGTCCCTGTGAAGGACACCGAAGAAGCCTTTTCTACT
TTTTCGATCAGTGGCAGCAAACTCGTTGTTTCAAGGACTTGCCATCGTTT
TCTCGCTGGCTTCTTGCGCCCCAAAAGTCGTCCACACCACCCCCTTCCTC
GAGTATTCTCGGCTCCTCTCCCGGACACCTCCACCTACCATCATTTTTCC
CTCTGAAAATCAACGGGAATTCCACGCTTGCTGCTGCTGCTAAACCGTTG
TCGGCGACTGGGGTGGTGGTGTGATCACGACGATTTCTCGATTCGTTCAC
ACAAATAAAACATCCAACAACGAACGACGACTTCGACGCCGACAACTAAG
GCCACTCG

Coding sequence (CDS) from alignment at Scaffold_392:262504..266611+

>EsuBft151_15a-0001 ID=EsuBft151_15a-0001|Name=EsuBft151_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=900bp|location=Sequence derived from alignment at Scaffold_392:262504..266611+ (Ectocarpus subulatus male Bft15b)
ATGTTGGTTGAAAAGGCGGGAAGTGATTTCGATGGGATAGATAGGCTAGG
AAAAACGTACTTGAGCCACCTTTGGCAAGGCAGGAACGATTGGGCCATCG
GTGATCGGTCCTGTGGGAACATTTCACCGTCCTCTGGGGGACGCGTGAGG
ATGATGGTCGATACTCCAAAGCGCGCTGCTAGCGCCGGCGGGGCGTCGGC
AGGAGCAGAAGGCGGCGCTACCGGCAACGGCAGTGGCTCTACTCACGGGG
GGACGGTGCGAAATAGTGGGAGACGGGCGGGCGGGGGGGGGGCGGGGGCG
GGGGGGAGCGGACACAGCGTGACCGCGCGGGAAGTTGCGAGGCAGGTCTA
CGGCGAGAGCGGGTTAAGGGGTTTCTACAGAGGGTTCGGCATTTCTGTGC
TGCAGTTCGCGCCGACGTCGGCGATCTGGTGGGCCGCGTACGGTGTGTAC
AGCCGGGCGTTCGTGCGCGCGCTGGGGAACCTTCCCGAGCCGGTCCCGAA
GCTGACGGCGCAGCAGCGGCAGGTCGGGGGCCAGGCGGCGGCGGGGTTCT
GCACGGGGATGACGACGGTGCTGTTGACCAACCCCCTGGACGTGCTGAGG
ACGAGGCTCCAGGTGGAGGGGCGCCGCGGCGACGATCGAACGATAGTGTC
GGAGTACCGAATTTTGATGGCGGAGAGCGGGCCGAGGGGGCTGATGAAGG
GGCTCGGGCCGCGGATACTGGCGGTGGCCCCGGCGTCCGTCCTCATCGTC
AGCGTCTACGAGCTCATCAAGCGCTTGAGCAGAAAAACTCCGCTCGCGCC
ACCGCCCGCGGAGACCCCGCATTTTCCGTCACAACCGCCGGCCACCGCGA
GGACGGCCACCTTTGCTACTACTGCTGTCACAGACCCAAATCACCGCTGA