|
|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Status | Manually annotated |
| Seed ortholog | 2880.D8LS61 |
| ProteomeId | EsuBft151_15 |
| Protein domains | CYTOPLASMIC_DOMAIN |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | PTHR24089 |
| Protein domains | IPR023395 |
| Protein domains | IPR018108 |
| Protein domains | TRANSMEMBRANE |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | solute carrier family 25 member 44 os:mus musculus gn:slc25a44 pe:2 sv:1 [Automatic annotation] |
| Nb exon | 4 |
| Max annot lvl | 2759|Eukaryota |
| Length | 2608 |
| Hectar predicted targeting category | other localisation |
| Evalue | 8.69e-117 |
| EggNOG OGs | KOG0765@1|root,KOG0765@2759|Eukaryota |
| Date last modified | 2016-09-21 |
| Date creation | 2016-06-14 |
| Preferred name | SLC25A44 |
| KEGG ko | ko:K15121 |
| KEGG TC | 2.A.29 |
| GOs | GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005743,GO:0006810,GO:0006839,GO:0008150,GO:0016020,GO:0016021,GO:0019866,GO:0019867,GO:0022857,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031306,GO:0031307,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0032592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0098573,GO:0098588,GO:0098805 |
| Description | Mitochondrial substrate carrier family protein |
| Description | transmembrane transport |
| COG category | U |
| BRITE | ko00000,ko02000 |
| Note | Groisillier A., annotator |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| TCDB | 2.A.29... |
| GO | 0008514 |
| GO | 0003676 |
| GO | 0009536 |
| GO | 0005739 |
| GO | 0016021 |
| GO | 0044237 |
| GO | 0031967 |
| GO | 0003333 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft151_15a-0001 ID=EsuBft151_15a-0001|Name=EsuBft151_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2608bp|location=Sequence derived from alignment at Scaffold_392:262504..266611+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
AGGGCAGGCAAGGATGGGTGGGTTTGAAAGACACACGTACTGGGAGCAAG
AGAGAGGGCCTCTCGCAATTGTCCAAGCGTGTCCACCACACGAGGCTGGT
GCTATACATTCGGTGGATGTATTTTTGTTTTTTTATCGTGTTCGGGCGTA
CCCTTGACTGCTTTCTGCTCCCACCCAAGGCATATACAGGGAGACGGTTG
ACACGTGGAATAGCCTGGACAAGACAGTAGCTGTACTGGGGCATAAGATG
TTGGTTGAAAAGGCGGGAAGTGATTTCGATGGGATAGATAGGCTAGGAAA
AACGTACTTGAGCCACCTTTGGCAAGGCAGGAACGATTGGGCCATCGGTG
ATCGGTCCTGTGGGAACATTTCACCGTCCTCTGGGGGACGCGTGAGGATG
ATGGTCGATACTCCAAAGCGCGCTGCTAGCGCCGGCGGGGCGTCGGCAGG
AGCAGAAGGCGGCGCTACCGGCAACGGCAGTGGCTCTACTCACGGGGGGA
CGGTGCGAAATAGTGGGAGACGGGCGGGCGGGGGGGGGGCGGGGGCGGGG
GGGAGCGGACACAGCGTGACCGCGCGGGAAGTTGCGAGGCAGGTCTACGG
CGAGAGCGGGTTAAGGGGTTTCTACAGAGGGTTCGGCATTTCTGTGCTGC
AGTTCGCGCCGACGTCGGCGATCTGGTGGGCCGCGTACGGTGTGTACAGC
CGGGCGTTCGTGCGCGCGCTGGGGAACCTTCCCGAGCCGGTCCCGAAGCT
GACGGCGCAGCAGCGGCAGGTCGGGGGCCAGGCGGCGGCGGGGTTCTGCA
CGGGGATGACGACGGTGCTGTTGACCAACCCCCTGGACGTGCTGAGGACG
AGGCTCCAGGTGGAGGGGCGCCGCGGCGACGATCGAACGATAGTGTCGGA
GTACCGAATTTTGATGGCGGAGAGCGGGCCGAGGGGGCTGATGAAGGGGC
TCGGGCCGCGGATACTGGCGGTGGCCCCGGCGTCCGTCCTCATCGTCAGC
GTCTACGAGCTCATCAAGCGCTTGAGCAGAAAAACTCCGCTCGCGCCACC
GCCCGCGGAGACCCCGCATTTTCCGTCACAACCGCCGGCCACCGCGAGGA
CGGCCACCTTTGCTACTACTGCTGTCACAGACCCAAATCACCGCTGACCC
CGCACAAAGTTGTTATCGTCTTTTTTGTGTGTGTGTGTGTCTCGGCGTGA
CGCGTGCATGTGAATGTACCTCTTTATGAGGTCACCGGTAGCGGGGAGGA
CGGGGGCGAGAGGGTGAAAATTTTGCTGGTGTTTTTACTTAAACCTCGGG
TGTGCCGTCCGTCTTTCGTGCTCGCGGGCGCGCGCGCGTGCTTCGTGTGC
AATTTTTGTGTTCCATTTTTGTGAGCATGTCTTCTTGGGAGTGGTCCTAT
GGCTTCCCCTCCTCTGTTTTCTTTCCTGTGCAGTAGTTTGTTGGAACTAG
CGGGCCGAGAATTGTCCGCGGTCGTGTTTCGCGCCTGTTCTTGGTTGCCC
CCCACCCGCCTTTCTTGCTAGGTGCTGGTACTGTACCCGCACTTTTCCAG
CCTGCGAGACATCACCTCGTAGTTGACACACGACGATGTATTCAAGGCGT
GCTGTTCCCAACTGCGTGGTTTCGCTTTCTTCATTTCGGTTCGTCTCTCC
AACAGTTTACAACAAATAAATCTGTATCTTGAAGGAGAGGTACAGACAAG
TGTACTAAATGCTGTATTTTCACACAAGTGTGCCTGTGAGTTGGGCGAAT
TTTCGGTTAGCTTTACAGCGGTGCAAATGTGTTTTTTTTTTAACGATTAA
CGTAAAATAACACACGTGGGACAATGGATGCGGGGGAAGAGGTGGAAGGG
AGGGAGCAGGGGGGCTTTCTGGCCAGTGCAGATTGTTCCAATTTGGAAGC
GCGGCACTAGGTCACGCTTACTCTTGTGTGTTGGAGCAGAACTCTTCTGG
TAATCTTGGTCGGGCGTCGTTACGAACAGTTGTAATTATTCGAAAAGAAC
GACCCAACCCGGCTGGAAGGACTTCTATGTGCATCTTAGCACCATCCCTT
CGTCCGGTAAGGACTGGCACACCAACATGCGGGGATTTGCTCCCAACGTA
GTCCCTCTCGCCGTCTTTCCCCCAAAAGTGCAAATTTGGTATCCGCTGCG
GCGAGCCCCCCGACTATTTNACAGTTCTTCCAGCAAAAGCTGAGCGCTCT
TTTACTTCGTTACAATCGAGAGAACCTTTCGCTGTCCAATCTGCCGTCAT
GCTGCACCGCGTGTGTCCCTGTGAAGGACACCGAAGAAGCCTTTTCTACT
TTTTCGATCAGTGGCAGCAAACTCGTTGTTTCAAGGACTTGCCATCGTTT
TCTCGCTGGCTTCTTGCGCCCCAAAAGTCGTCCACACCACCCCCTTCCTC
GAGTATTCTCGGCTCCTCTCCCGGACACCTCCACCTACCATCATTTTTCC
CTCTGAAAATCAACGGGAATTCCACGCTTGCTGCTGCTGCTAAACCGTTG
TCGGCGACTGGGGTGGTGGTGTGATCACGACGATTTCTCGATTCGTTCAC
ACAAATAAAACATCCAACAACGAACGACGACTTCGACGCCGACAACTAAG
GCCACTCG back to topprotein sequence of EsuBft151_15a-0001 >EsuBft151_15 ID=EsuBft151_15|Name=EsuBft151_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=299bp
MLVEKAGSDFDGIDRLGKTYLSHLWQGRNDWAIGDRSCGNISPSSGGRVR
MMVDTPKRAASAGGASAGAEGGATGNGSGSTHGGTVRNSGRRAGGGGAGA
GGSGHSVTAREVARQVYGESGLRGFYRGFGISVLQFAPTSAIWWAAYGVY
SRAFVRALGNLPEPVPKLTAQQRQVGGQAAAGFCTGMTTVLLTNPLDVLR
TRLQVEGRRGDDRTIVSEYRILMAESGPRGLMKGLGPRILAVAPASVLIV
SVYELIKRLSRKTPLAPPPAETPHFPSQPPATARTATFATTAVTDPNHR back to topmRNA from alignment at Scaffold_392:262504..266611+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft151_15a-0001 ID=EsuBft151_15a-0001|Name=EsuBft151_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4108bp|location=Sequence derived from alignment at Scaffold_392:262504..266611+ (Ectocarpus subulatus male Bft15b)
AGGGCAGGCAAGGATGGGTGGGTTTGAAAGACACACGTACTGGGAGCAAG
AGAGAGGGCCTCTCGCAATTGTCCAAGCGTGTCCACCACACGAGGCTGGT
GCTATACATTCGGTGGATGTATTTTTGTTTTTTTATCGTGTTCGGGCGTA
CCCTTGACTGCTTTCTGCTCCCACCCAAGGCATATACAGGGAGACGGTTG
ACACGTGGAATAGCCTGGACAAGACAGTAGCTGTACTGGGGCATAAGATG
TTGGTTGAAAAGGCGGGAAGTGATTTCGATGGGATAGATAGGCTAGGAAA
AACGTACTTGAGCCACCTTTGGCAAGGCAGGAACGATTGGGCCATCGGTG
ATCGGTCCTGTGGGAACATTTCACCGTCCTCTGGGGGACGCGTGGTAATG
GTCTATCGGCTAAGGCATGCAAAACAAATGAGTACGCCCCCCCCCCCNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCC
TCCCCAACCTCTGCGGTATAGATAGGGTACACGTCGGAAAAACATTTTTG
TTAGCCAGCTCTGGCAAACTATGAAGGAACAATGCTCCGTCCTCTCGAGG
ACGGGTAGTCAAAGGTCTTGACAACCTCGGCATGCAAACCATGAGCCCCC
CCCCCCTGGCCCAACCTCTTCGGGGTCTCTTTTCTTTCTAGAGGATGATG
GTCGATACTCCAAAGCGCGCTGCTAGCGCCGGCGGGGCGTCGGCAGGAGC
AGAAGGCGGCGCTACCGGCAACGGCAGTGGCTCTACTCACGGGGGGACGG
TGCGAAATAGTGGGAGACGGGCGGGCGGGGGGGGGGCGGGGGCGGGGGGG
AGCGGACACAGCGTGACCGCGCGGGAAGTTGCGAGGCAGGTCTACGGCGA
GAGCGGGTTAAGGGGTTTCTACAGAGGGTTCGGCATTTCTGTGCTGCAGT
TCGCGCCGACGTCGGCGGTGAGTTTCTTTCATGTTCTGTGTTGATGAGTC
TCGTTGGCTGGTGGTTGCGTGCTCCGAGAGAGTCTTCGGTGCGACCGCAA
GTATTGTGCTCTCGGTACCCTCGGTTCTTCGGTTGGTACGCTCGGAACCT
TCGGACCCTCTAGATTGCGGGTTCGAATCTCTCTTGGAGTGAAACTTAGC
GCGATGTTAGGCGTGGAAAGCGCGTGGTGCTTGATTCATGAGCAGAAACG
AAATAAGGGAACGATCCTGCTTGCTGAACTTTCCTCGCGTTAAGAATGAA
CGGTGAGCAATGTAAGAGGTGGAGAATACAACCAAAAAGCTGCAGTGTTT
ATCCTTCCTCCCGTGTGTGTCAACGTCAAAATGCGAACAGAGGGAGTCCC
TTTGTTGTGCCGGTTGAATAGTGCGGTAGCGATAGCCAATGCCCGCTACA
GTGCCGGTGTTGTCGGCGGGCACACACCGAATTTCGAAGTCATTGGCAAT
ACTTTGAATAGTGCCGGTCCGGTATAGTGCCGTTGAATTTTCTGGGTCCA
TACCGGCACTAAGTGGGAACCCCCTCTGTAACGAAGGGTGTAGAATGGCG
TTCGGAATATAGGTGGTACGAGAGCACAACAAGCAATAAGAGACACACAC
AGGTACATCCAGCGACCAAGGTATAGAAAAACAGGAATATCATAAGAACG
ACCTCTTCTTGGTACCCCTCCACTCCACCCCAACACCCCCGACATCTACT
CTGCCTGCCCCCCCCCGCTCCCTGGTTCTGTCCAGATCTGGTGGGCCGCG
TACGGTGTGTACAGCCGGGCGTTCGTGCGCGCGCTGGGGAACCTTCCCGA
GCCGGTCCCGAAGCTGACGGCGCAGCAGCGGCAGGTCGGGGGCCAGGCGG
CGGCGGGGTTCTGCACGGGGATGACGACGGTGCTGTTGACCAACCCCCTG
GACGTGCTGAGGACGAGGCTCCAGGTGGAGGGGCGCCGCGGCGACGATCG
AACGATAGTGTGAGTGTTGTACATACGGTAGCCTAAGTTTTGCTGCTGCT
GCTGCCGCTGCTGCTGTTGTTGTTGTCGTCGTTGTTGTTGTTGGCTGGTT
TGTGGTTACAAGAGGTGTGGGTATCTCGAGCGCGCGAAGTGATTTGTGAG
CAGTGTTTCGCGCAAAACCACCCAACGCTAGCGGGTACGTCGCAACCTTG
AATGAGGAGCATGGTTTCGGCGAGACACATCGTATTTTTTGCTACCTTCC
TTGCAACATGTTTGGATCTAGACGTTGGCGCTGACCACCTCCGTACACTC
ATATATGATGTCAAGGACACCCGCGCCCCCCACTCCCCGCTTGACTGAAC
ACGTTTTTCTGCCCTCTGCCTCTGTGTTTTGTGCCTCTGTGCCTTTGTTC
CTCTATGCCTAACGACACGAAACAACAACAATAAACAACGCTAGGTCGGA
GTACCGAATTTTGATGGCGGAGAGCGGGCCGAGGGGGCTGATGAAGGGGC
TCGGGCCGCGGATACTGGCGGTGGCCCCGGCGTCCGTCCTCATCGTCAGC
GTCTACGAGCTCATCAAGCGCTTGAGCAGAAAAACTCCGCTCGCGCCACC
GCCCGCGGAGACCCCGCATTTTCCGTCACAACCGCCGGCCACCGCGAGGA
CGGCCACCTTTGCTACTACTGCTGTCACAGACCCAAATCACCGCTGACCC
CGCACAAAGTTGTTATCGTCTTTTTTGTGTGTGTGTGTGTCTCGGCGTGA
CGCGTGCATGTGAATGTACCTCTTTATGAGGTCACCGGTAGCGGGGAGGA
CGGGGGCGAGAGGGTGAAAATTTTGCTGGTGTTTTTACTTAAACCTCGGG
TGTGCCGTCCGTCTTTCGTGCTCGCGGGCGCGCGCGCGTGCTTCGTGTGC
AATTTTTGTGTTCCATTTTTGTGAGCATGTCTTCTTGGGAGTGGTCCTAT
GGCTTCCCCTCCTCTGTTTTCTTTCCTGTGCAGTAGTTTGTTGGAACTAG
CGGGCCGAGAATTGTCCGCGGTCGTGTTTCGCGCCTGTTCTTGGTTGCCC
CCCACCCGCCTTTCTTGCTAGGTGCTGGTACTGTACCCGCACTTTTCCAG
CCTGCGAGACATCACCTCGTAGTTGACACACGACGATGTATTCAAGGCGT
GCTGTTCCCAACTGCGTGGTTTCGCTTTCTTCATTTCGGTTCGTCTCTCC
AACAGTTTACAACAAATAAATCTGTATCTTGAAGGAGAGGTACAGACAAG
TGTACTAAATGCTGTATTTTCACACAAGTGTGCCTGTGAGTTGGGCGAAT
TTTCGGTTAGCTTTACAGCGGTGCAAATGTGTTTTTTTTTTAACGATTAA
CGTAAAATAACACACGTGGGACAATGGATGCGGGGGAAGAGGTGGAAGGG
AGGGAGCAGGGGGGCTTTCTGGCCAGTGCAGATTGTTCCAATTTGGAAGC
GCGGCACTAGGTCACGCTTACTCTTGTGTGTTGGAGCAGAACTCTTCTGG
TAATCTTGGTCGGGCGTCGTTACGAACAGTTGTAATTATTCGAAAAGAAC
GACCCAACCCGGCTGGAAGGACTTCTATGTGCATCTTAGCACCATCCCTT
CGTCCGGTAAGGACTGGCACACCAACATGCGGGGATTTGCTCCCAACGTA
GTCCCTCTCGCCGTCTTTCCCCCAAAAGTGCAAATTTGGTATCCGCTGCG
GCGAGCCCCCCGACTATTTNACAGTTCTTCCAGCAAAAGCTGAGCGCTCT
TTTACTTCGTTACAATCGAGAGAACCTTTCGCTGTCCAATCTGCCGTCAT
GCTGCACCGCGTGTGTCCCTGTGAAGGACACCGAAGAAGCCTTTTCTACT
TTTTCGATCAGTGGCAGCAAACTCGTTGTTTCAAGGACTTGCCATCGTTT
TCTCGCTGGCTTCTTGCGCCCCAAAAGTCGTCCACACCACCCCCTTCCTC
GAGTATTCTCGGCTCCTCTCCCGGACACCTCCACCTACCATCATTTTTCC
CTCTGAAAATCAACGGGAATTCCACGCTTGCTGCTGCTGCTAAACCGTTG
TCGGCGACTGGGGTGGTGGTGTGATCACGACGATTTCTCGATTCGTTCAC
ACAAATAAAACATCCAACAACGAACGACGACTTCGACGCCGACAACTAAG
GCCACTCG back to topCoding sequence (CDS) from alignment at Scaffold_392:262504..266611+ >EsuBft151_15a-0001 ID=EsuBft151_15a-0001|Name=EsuBft151_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=900bp|location=Sequence derived from alignment at Scaffold_392:262504..266611+ (Ectocarpus subulatus male Bft15b)
ATGTTGGTTGAAAAGGCGGGAAGTGATTTCGATGGGATAGATAGGCTAGG
AAAAACGTACTTGAGCCACCTTTGGCAAGGCAGGAACGATTGGGCCATCG
GTGATCGGTCCTGTGGGAACATTTCACCGTCCTCTGGGGGACGCGTGAGG
ATGATGGTCGATACTCCAAAGCGCGCTGCTAGCGCCGGCGGGGCGTCGGC
AGGAGCAGAAGGCGGCGCTACCGGCAACGGCAGTGGCTCTACTCACGGGG
GGACGGTGCGAAATAGTGGGAGACGGGCGGGCGGGGGGGGGGCGGGGGCG
GGGGGGAGCGGACACAGCGTGACCGCGCGGGAAGTTGCGAGGCAGGTCTA
CGGCGAGAGCGGGTTAAGGGGTTTCTACAGAGGGTTCGGCATTTCTGTGC
TGCAGTTCGCGCCGACGTCGGCGATCTGGTGGGCCGCGTACGGTGTGTAC
AGCCGGGCGTTCGTGCGCGCGCTGGGGAACCTTCCCGAGCCGGTCCCGAA
GCTGACGGCGCAGCAGCGGCAGGTCGGGGGCCAGGCGGCGGCGGGGTTCT
GCACGGGGATGACGACGGTGCTGTTGACCAACCCCCTGGACGTGCTGAGG
ACGAGGCTCCAGGTGGAGGGGCGCCGCGGCGACGATCGAACGATAGTGTC
GGAGTACCGAATTTTGATGGCGGAGAGCGGGCCGAGGGGGCTGATGAAGG
GGCTCGGGCCGCGGATACTGGCGGTGGCCCCGGCGTCCGTCCTCATCGTC
AGCGTCTACGAGCTCATCAAGCGCTTGAGCAGAAAAACTCCGCTCGCGCC
ACCGCCCGCGGAGACCCCGCATTTTCCGTCACAACCGCCGGCCACCGCGA
GGACGGCCACCTTTGCTACTACTGCTGTCACAGACCCAAATCACCGCTGA back to top
|