EsuBft151_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft151_12a-0001
Unique NameEsuBft151_12a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_392contigScaffold_392:232365..235793 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LS65
ProteomeIdEsuBft151_12
Protein domainsIPR029071
Protein domainsIPR011332
Protein domainsIPR002906
Protein domainsIPR000626
Protein domainsPTHR10666
Protein domainsG3DSA
Protein domainsIPR019954
Protein domainsIPR019956
Ownerapollo_admin@sb-roscoff.fr
Noteubiquitin-40s ribosomal protein s27a os:gallus gallus gn:rps27a pe:2 sv:3 [Automatic annotation]
Nb exon5
Max annot lvl2759|Eukaryota
Length784
Hectar predicted targeting categoryother localisation
Evalue2.4e-85
EggNOG OGsCOG5272@1|root,KOG0004@2759|Eukaryota
Ec32 ortholog descriptionUbiquitin
Ec32 orthologEc-12_004660.1
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K02977
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Descriptionstructural constituent of ribosome
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko04147
Cross References
External references for this mRNA
DatabaseAccession
GO0031227
GO0034138
GO0031145
GO0035666
GO0046872
GO0048011
GO0007219
GO0051092
GO0038095
GO0006006
GO0045944
GO0061418
GO0006367
GO0008543
GO0007254
GO0043123
GO0034134
GO0007250
GO0044281
GO0050852
GO0070423
GO0000184
GO0035419
GO0006977
GO0070062
GO0006614
GO0006415
GO0006414
GO0019082
GO0006413
GO0019083
GO0003735
GO0007220
GO0038124
GO0034166
GO0034162
GO0038123
GO0051437
GO0051436
GO0010008
GO0043065
GO0000090
GO0043066
GO0005622
GO0030512
GO0002755
GO0002479
GO0035682
GO0034154
GO0022627
GO0042059
GO0035681
GO0000080
GO0034146
GO0000084
GO0097190
GO0075733
GO0000122
GO0000086
GO0005654
GO0000087
GO0030666
GO0055085
GO0005978
GO0019221
GO0019068
GO0016197
GO0034142
GO0032481
GO0000209
GO0034220
GO0032480
GO0019985
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft151_12aEsuBft151_12aEctocarpus subulatus male Bft15bgeneScaffold_392 232365..235793 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft151_12a-0001EsuBft151_12Ectocarpus subulatus male Bft15bpolypeptideScaffold_392 232625..235737 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft151_12a-0001-exonagat-exon-79080Ectocarpus subulatus male Bft15bexonScaffold_392 232365..232657 -
EsuBft151_12a-0001-exonagat-exon-79083Ectocarpus subulatus male Bft15bexonScaffold_392 232888..233121 -
EsuBft151_12a-0001-exonEsuBft151_12a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_392 233830..233934 -
EsuBft151_12a-0001-exonagat-exon-79082Ectocarpus subulatus male Bft15bexonScaffold_392 235285..235374 -
EsuBft151_12a-0001-exonagat-exon-79081Ectocarpus subulatus male Bft15bexonScaffold_392 235732..235793 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft151_12a-0001-exonagat-three_prime_utr-4553Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_392 232365..232624 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft151_12a-0001-cdsEsuBft151_12a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_392 232625..232657 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft151_12a-0001-exonagat-five_prime_utr-2971Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_392 235738..235793 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft151_12a-0001 ID=EsuBft151_12a-0001|Name=EsuBft151_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=784bp|location=Sequence derived from alignment at Scaffold_392:232365..235793- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCCCACACGACCAAGCCCCGGTCTTCTTGCTCCTCAGAGCAACCCCCAGC
GTCGCCATGCAAATCTTCGTGAAGGCGCAATCGACAATCACCTTGGGTGT
TGAGCCCACCGACACCGTCGATGGCGTCAAGCAGATGATCCAGGAGAGGG
AGGGTATCCCCTCGTGCGACCAGCGCCTGATCTTCGGAGGAAGGCAGCTC
GAGGATGAGCTTACGCTGGCCGACTACGACATGCAGAAGGAGTCCACCCT
TCACCTGGTACTTCGCCTCCGCGGTGGTGGTAAGAAGCGCAAGAAGAAGA
CGTACACCAAGCCCAAGAAGGTTAAGCACGTGCACAAGGCGGTCAAGCTC
GCGGTGCTCAAGTTCTACCGCGTGGACGACACCGGCAAGGTGCAGCGGCT
GCGCAAGTCGTGCCCCAACGAAGAGTGCGGGGTGGGCGTGCGCATGGCCG
TGCACAGGAACCGCTTCTACTGCGGCAAGTGCGGCCTCACGTACGTCGTG
ACCGAAACCAAGGACGCCCCTTAAGCTGTCGGAAGACAGGCATGCATTCC
CGAAGAAGGCTCCTCAGGGGGGCGACCACGGCTTGCTGCAGATAGCCATC
GCGTTGAGTTGACTTGGAAGAGAGGTGGTCGTTGGTTGTGTCATTGCTGT
CACTTCTTCTCTGGTGGGGACGCAAGGGGAGCGGGGAGGGGGCGCTTTTT
TCCGGAGGCGATGTTGCGTTCGTTCGGCTCGGATGAGACGTCGTCTACGA
AAGATCAAACTACAAAAAAAGTGAACATTTGTCA
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protein sequence of EsuBft151_12a-0001

>EsuBft151_12 ID=EsuBft151_12|Name=EsuBft151_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=155bp
MQIFVKAQSTITLGVEPTDTVDGVKQMIQEREGIPSCDQRLIFGGRQLED
ELTLADYDMQKESTLHLVLRLRGGGKKRKKKTYTKPKKVKHVHKAVKLAV
LKFYRVDDTGKVQRLRKSCPNEECGVGVRMAVHRNRFYCGKCGLTYVVTE
TKDAP
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mRNA from alignment at Scaffold_392:232365..235793-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft151_12a-0001 ID=EsuBft151_12a-0001|Name=EsuBft151_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3429bp|location=Sequence derived from alignment at Scaffold_392:232365..235793- (Ectocarpus subulatus male Bft15b)
CCCCACACGACCAAGCCCCGGTCTTCTTGCTCCTCAGAGCAACCCCCAGC
GTCGCCATGCAAGTGAGTATGTTCGCCAGGAGTCATCTTTGGCACAGCAT
GCTACCTGATATGTATGCTTGTCGAAAGCTAGCCATGACAAGAGGTCTGC
TACCCGGGGAGGTTTTTTCTGTTCGCCATAGCCACACACCGAAAGGCGAG
CCGCGAACTTTCCGGCTAGGTGCTTTCCAGCGCTTTGGCCACTGCGTAGC
CTTCTGCCGCGACGTTGTGATCCCGACGAGGAGGCCCTGTCCGCCTGCGA
TGTAGAATCGTGGTGGCTGATTTTGCTCTACCCCACCATCGAGTCACCCC
TACGAACGCCCTCCCTCCCTCCGCGCTGCTGCTGCCCCGCACAAATATCG
CCCATCTGTCTCTCGACAGATCTTCGTGAAGGCGCAATCGACAATCACCT
TGGGTGTTGAGCCCACCGACACCGTCGATGGCGTCAAGCAGATGATCCAG
GAGAGGGAGGTGAGCCGTGATAACTGCTGTTTGTTCGTAGTTTCTGTAAC
GAAATGCAATCTTTTGACGTTTTTGTGACCATGCCTTGTTGCTCCAAAAT
AGGGTCGGATTGCTGTCGCAATGAAAGGAGAAAGTTGCTCTCTGTAACCA
AGTGAACCTTTTGTAACCGAGCTAGTAGCAACGGAGAGGCAGGGAGCGCC
GACCGCCCCGAATGCTCAAGACTATGATACAAATATACAGTCTGCGGAGC
ATGAAGTGTGATGCTGTCACATGCTTTGGACCCCTACAATTTGGTTGCGA
TGTTTGTGTCGATGGAAACGCGCGCTGTGCTGCATTATCCTCTGAGGAAG
TCACCGAGGGCCAATCACCGCCGTCGGAGTATAATGTGTGATTTGTCACT
TGCTTTGGGCTAGTTCAGTTTGGTTGCGATGTTTGTGTCGATGAAAACGC
GCGCTGTGCTGCATCATCCTTTGAGGTCACTAAGGGCCAATCACCGCCGT
TGCCGCACAGCACGAAACCAAAAGCGGATTATTTCGTCCGATGCATATCC
ATGTATATCATATGGACGGTAGAGCGTGCCTGCTTTCACTCAGCCAGTTG
CAATGTCTCCCCCAAGTATGTCAAAGCACTCTCCAACCAGAGTATGCATA
AGGTCATGACTGTTGCTACCCCCAACCCTAACCCTTTCTCACTACTGGTG
TACCCTCCGTTCGTGCAACTGCTGTCGTGTCTACCTGTCCCTCGGAAATC
CCCACGCAGGTACGTCGATTCAGTCTTTTCTTCAACCGCCGTATTGGTTT
GCGGGCTTGGCGTCACCCCTCTGACCTCTGAAGTTGTCGGCCGAAGGAGA
TACATCCTCTCTCGCCGAAACCCGAGGGCTCTCGGTTCTTTAAACAGGGG
AGACGAAAAGATCCCGCGCGTTTAAGGTTTCGCCACGTCCCGGACTACTT
CCTCGCGGGACGCGGGGAAAAAGTTTACCCAAGTCTGTTGGCCCATCCGT
CCACCAACCAAAGTGTCTCCCCGCCCTATGCATATGCACGCTGAGGACGC
TTCCATAGGGCCGCAAGGCCAAGTGGATAGTTGAGGCACTTTAACTCGAG
CTAAAAGTGTCGCCCTTTTGTACTTTTCGTTCGCCCCCCCCCATCCCTCT
CTCGCGTTGCATGTGCGTGCGAAACGACGCGTTGCGCATGACGACGGACC
ATCCTCGGGTGGTTTCTGTGTCCGTTTTCAACACTGCTTGAACGTACAAC
GTGGGGTCCTCTGTTCCCGTATGGGCCCTTCCCTACGTCCCTTTGGTGTG
GACTTGGCCCCTTGTCGGCGTGCCGCTTTGTGTGCCATTTCGGTGTCTTG
AGGGAGCAGGGTATCCCCTCGTGCGACCAGCGCCTGATCTTCGGAGGAAG
GCAGCTCGAGGATGAGCTTACGCTGGCCGACTACGACATGCAGAAGGAGT
CCACCCTTCACCTGGTGCGTTTTGGTCTTGGTAGTTGGATGTTCTCGTCT
GCTGTTGCGTTTTGTGCGGTGGGTTGTTGTTTCGCAATAGCTGTTTCCTG
TTGTGACTATCGACGTTGTCGCGGTGGGCCATCAATCATCTGTTTTGGTC
CTACCATGGTCCTTGTGGTTGTGCTGGTGCGGGGCTCCTGCGTGTCCATT
GGTGTCGATTCTCAGGCCAACTCCGTGACCTGCACATGCGGTAGGTGGTT
GGCGAATGTTGTTTCCTGCTGATGTTCGTGTCAGAATTGGTGTCAGCGCG
GTTGATTGGTCGATCACATGTTTTGTTTTGTGGAAGAGCTATTCACTGGA
CAAATGCTGGACACGAACAGCGTCGATGTTTCGAGGCGACGCCGTTGATA
CTTGCGCTTGACGCGATGTTTCTGCTTGACGTACCATGGTATTCTTGTTT
ACACGTCGTTGTGAGCCGTTTTATCCCCGCCGCTTGTGAGAGCTATGATA
GCTCATGATAGCGATGTCTGGGCAGATGTCGTCGCCGCCGTTGACTTTAG
GGCCTCGAATTATGCACCACTTGGTCCACACTGACGACTCCACGCCACTC
TCACGTGTTCTTGTTCAGCTACTGCTTTACATACTTTCCTTCACAGCACA
ACGGGTACCATTTTCCGTGATGTTCCATGTTTTTTTTTAGAACAAAAAAT
GACGCATCTACCGTCACTGCAGGTACTTCGCCTCCGCGGTGGTGGTAAGA
AGCGCAAGAAGAAGACGTACACCAAGCCCAAGAAGGTTAAGCACGTGCAC
AAGGCGGTCAAGCTCGCGGTGCTCAAGTTCTACCGCGTGGACGACACCGG
CAAGGTGCAGCGGCTGCGCAAGTCGTGCCCCAACGAAGAGTGCGGGGTGG
GCGTGCGCATGGCCGTGCACAGGAACCGCTTCTACTGCGGCAAGTGCGGC
CTCACGGTGAGTCTTTTTGCATGTACCATGTATGCATGCGCGCCTTTTTT
CCCCTTGTTTTTTGTGTCGTCTCAGCAGAATACCGCGCCACGACTCCGCT
CTGGTGATGACCCTCGTTTTTCTTAGTGTCGAACCCGCCGTTCCCTTCCG
TATGCAGCAGAAGCGCTAAATATCTCCCTTTTTTTTTCACGTGCCGTCTT
TGTATCGACCCTTGCTTCCTCTCTTTGTTTGACCAGTACGTCGTGACCGA
AACCAAGGACGCCCCTTAAGCTGTCGGAAGACAGGCATGCATTCCCGAAG
AAGGCTCCTCAGGGGGGCGACCACGGCTTGCTGCAGATAGCCATCGCGTT
GAGTTGACTTGGAAGAGAGGTGGTCGTTGGTTGTGTCATTGCTGTCACTT
CTTCTCTGGTGGGGACGCAAGGGGAGCGGGGAGGGGGCGCTTTTTTCCGG
AGGCGATGTTGCGTTCGTTCGGCTCGGATGAGACGTCGTCTACGAAAGAT
CAAACTACAAAAAAAGTGAACATTTGTCA
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Coding sequence (CDS) from alignment at Scaffold_392:232365..235793-

>EsuBft151_12a-0001 ID=EsuBft151_12a-0001|Name=EsuBft151_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=468bp|location=Sequence derived from alignment at Scaffold_392:232365..235793- (Ectocarpus subulatus male Bft15b)
ATGCAAATCTTCGTGAAGGCGCAATCGACAATCACCTTGGGTGTTGAGCC
CACCGACACCGTCGATGGCGTCAAGCAGATGATCCAGGAGAGGGAGGGTA
TCCCCTCGTGCGACCAGCGCCTGATCTTCGGAGGAAGGCAGCTCGAGGAT
GAGCTTACGCTGGCCGACTACGACATGCAGAAGGAGTCCACCCTTCACCT
GGTACTTCGCCTCCGCGGTGGTGGTAAGAAGCGCAAGAAGAAGACGTACA
CCAAGCCCAAGAAGGTTAAGCACGTGCACAAGGCGGTCAAGCTCGCGGTG
CTCAAGTTCTACCGCGTGGACGACACCGGCAAGGTGCAGCGGCTGCGCAA
GTCGTGCCCCAACGAAGAGTGCGGGGTGGGCGTGCGCATGGCCGTGCACA
GGAACCGCTTCTACTGCGGCAAGTGCGGCCTCACGTACGTCGTGACCGAA
ACCAAGGACGCCCCTTAA
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