EsuBft1515_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1515_6a-0001
Unique NameEsuBft1515_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_228contigScaffold_228:189314..190850 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1515_6
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length129
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1515_6aEsuBft1515_6aEctocarpus subulatus male Bft15bgeneScaffold_228 189314..190850 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1515_6a-0001-exonagat-exon-19787Ectocarpus subulatus male Bft15bexonScaffold_228 189314..190552 -
EsuBft1515_6a-0001-exonEsuBft1515_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_228 190794..190850 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1515_6a-0001-exonagat-three_prime_utr-4530Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_228 189314..190516 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1515_6a-0001-cdsEsuBft1515_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_228 190517..190552 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1515_6a-0001EsuBft1515_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_228 190517..190850 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1515_6a-0001 ID=EsuBft1515_6a-0001|Name=EsuBft1515_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1296bp|location=Sequence derived from alignment at Scaffold_228:189314..190850- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCCATCTGATGGATGGCGACCAGTGTCTCTCCNGCCTGTCAGGGAG
GGCTGAGACGGGCCCCGGTGCTGCGGTGCTGACAGCAGCTTGATACAGAA
TGGGATCCTGTTGCTGGGAGGGAGCTACTTGTAAAGGGGTAGTAAAGAAA
TGTCTGTTACCAGTGTTTCTCGCAGCAGCGTACCAGCAAGTTGGTTGATG
AACTGCGTGTGGTTGAGATACTGCTTGATCTTCCGTTTGGTTGATCGCCC
TTTTTTATATGTCATTAAGAGCGATGTAGCGTTGATATTCGTTTTTCCGC
TGCGAATTGACATTGGTGCTTGGGGTTGTAGGCGCACCCCTGTGCTAACA
GTAGCCGGATACAGTTGGGATCCTGTTGCTGGGAGGGGGCTACTTGGAAA
GGAGTAGCACAAATGTCTGATATTTGTAAACGCGTCGGTTTGCAATTTTG
GCGACTGCTGTGTTGATTTTTGTGTGGACAAGTCATTCAGCAGGATGAAC
CTTGGGGGCGGAGGGTTTTGATCCTGGGGCGGGGTTTCCCTTCGTTTTTG
TTTCTTTTTGAGTTTACTACAGTACAAGTACACCTTGGAAACTTTGGTTT
TGAGAGCATTCGTAACGATGTACAGAATCAGGGAGGGTGTTCGTGAGGTG
GATTATGCCATCCTTACGAAGGCTACTGTGGCGATACTCATGCGTGGTTT
TGAGCTACATGCAAGTGCGCAAGTAGTGGCTGTTCACCGATCTTGGATCT
TCGGGGTATCTCCGATCATATCTTTGACAAGTTGTCACGTGTTCCGCTGT
CGCGTGTTCCGAGTTCCGAATGCGTCTTTTCTGCGGGGAATTTCTTGCGG
CTGTTGCACGAGTGCCTCGGTGTTTGTGATGCACCCTGTGCTCACTCTCT
TCCGTGGGTTGTGTCTACAAGGACAACCAATAAAACGTCTTAACCATCTC
TTCACGTTTGTCAACCGGGTCAGCCGTGCTCATCCAGCAGCACTAGNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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protein sequence of EsuBft1515_6a-0001

>EsuBft1515_6 ID=EsuBft1515_6|Name=EsuBft1515_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=30bp
MTHLMDGDQCLSXLSGRAETGPGAAVLTAA
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mRNA from alignment at Scaffold_228:189314..190850-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1515_6a-0001 ID=EsuBft1515_6a-0001|Name=EsuBft1515_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1537bp|location=Sequence derived from alignment at Scaffold_228:189314..190850- (Ectocarpus subulatus male Bft15b)
ATGACCCATCTGATGGATGGCGACCAGTGTCTCTCCNGCCTGTCAGGGAG
GGCTGAGGTATGACCCTTTTTCGTGATAGATGGCAACCAGTGTCTTCTCA
TTTTTTTCGCAGGTATCAACAGTTGGGTGATGATCTGTTTTGATTGAGAC
ACTGCTTTGATCTTTCATTGATGTACAGGTCGAGGGGGGCACCCTTCCCT
GCGATGTGATTGATTGCCCTCTGTCCTTCAGCTGAGAACAATGTAGCGTT
GGTTTTCGCTTTTCTGTTATGGATCGACAACGGTGCTCGGGGTTGCAGAC
GGGCCCCGGTGCTGCGGTGCTGACAGCAGCTTGATACAGAATGGGATCCT
GTTGCTGGGAGGGAGCTACTTGTAAAGGGGTAGTAAAGAAATGTCTGTTA
CCAGTGTTTCTCGCAGCAGCGTACCAGCAAGTTGGTTGATGAACTGCGTG
TGGTTGAGATACTGCTTGATCTTCCGTTTGGTTGATCGCCCTTTTTTATA
TGTCATTAAGAGCGATGTAGCGTTGATATTCGTTTTTCCGCTGCGAATTG
ACATTGGTGCTTGGGGTTGTAGGCGCACCCCTGTGCTAACAGTAGCCGGA
TACAGTTGGGATCCTGTTGCTGGGAGGGGGCTACTTGGAAAGGAGTAGCA
CAAATGTCTGATATTTGTAAACGCGTCGGTTTGCAATTTTGGCGACTGCT
GTGTTGATTTTTGTGTGGACAAGTCATTCAGCAGGATGAACCTTGGGGGC
GGAGGGTTTTGATCCTGGGGCGGGGTTTCCCTTCGTTTTTGTTTCTTTTT
GAGTTTACTACAGTACAAGTACACCTTGGAAACTTTGGTTTTGAGAGCAT
TCGTAACGATGTACAGAATCAGGGAGGGTGTTCGTGAGGTGGATTATGCC
ATCCTTACGAAGGCTACTGTGGCGATACTCATGCGTGGTTTTGAGCTACA
TGCAAGTGCGCAAGTAGTGGCTGTTCACCGATCTTGGATCTTCGGGGTAT
CTCCGATCATATCTTTGACAAGTTGTCACGTGTTCCGCTGTCGCGTGTTC
CGAGTTCCGAATGCGTCTTTTCTGCGGGGAATTTCTTGCGGCTGTTGCAC
GAGTGCCTCGGTGTTTGTGATGCACCCTGTGCTCACTCTCTTCCGTGGGT
TGTGTCTACAAGGACAACCAATAAAACGTCTTAACCATCTCTTCACGTTT
GTCAACCGGGTCAGCCGTGCTCATCCAGCAGCACTAGNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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Coding sequence (CDS) from alignment at Scaffold_228:189314..190850-

>EsuBft1515_6a-0001 ID=EsuBft1515_6a-0001|Name=EsuBft1515_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=93bp|location=Sequence derived from alignment at Scaffold_228:189314..190850- (Ectocarpus subulatus male Bft15b)
ATGACCCATCTGATGGATGGCGACCAGTGTCTCTCCNGCCTGTCAGGGAG
GGCTGAGACGGGCCCCGGTGCTGCGGTGCTGACAGCAGCTTGA
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