EsuBft1515_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1515_2a-0001
Unique NameEsuBft1515_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_228contigScaffold_228:136668..139432 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1515_2
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsTMhelix
Protein domainsTRANSMEMBRANE
Protein domainsSIGNAL_PEPTIDE
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Length142
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-13_003290.1
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1515_2aEsuBft1515_2aEctocarpus subulatus male Bft15bgeneScaffold_228 136668..139432 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1515_2a-0001EsuBft1515_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_228 136727..138386 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1515_2a-0001-exonagat-exon-19779Ectocarpus subulatus male Bft15bexonScaffold_228 136668..136782 +
EsuBft1515_2a-0001-exonEsuBft1515_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_228 137518..137579 +
EsuBft1515_2a-0001-exonagat-exon-19778Ectocarpus subulatus male Bft15bexonScaffold_228 137917..137996 +
EsuBft1515_2a-0001-exonagat-exon-19780Ectocarpus subulatus male Bft15bexonScaffold_228 138264..139432 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1515_2a-0001-exonagat-five_prime_utr-2949Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_228 136668..136726 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1515_2a-0001-cdsEsuBft1515_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_228 136727..136782 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1515_2a-0001-exonagat-three_prime_utr-4527Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_228 138387..139432 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1515_2a-0001 ID=EsuBft1515_2a-0001|Name=EsuBft1515_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1426bp|location=Sequence derived from alignment at Scaffold_228:136668..139432+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTTGGCAAGACTTGTTTCCTCCACGGACTCCTACGTTTTGTGAACTCGGG
GCTGCGGCGATGATCAGGAAGAGCAAGACCCGTGAGGCCCGCAAGCGACC
TCCCGCGCTACGAAGGTCCCACCTCCTGGTGGCGACCGTGATGTCAGCCA
CGACCGTGAAGATCGTGGAAAGCAACAGGCTGGTTGAGTTTCCGTCGGTT
TTCAGATGCATGTGGAACGACCTGCCGCACCCGGCTCAGTTCGCGATCAT
ATTTCTGATGCTTGCGCTCCTGTTCGGCGTCCACCGGATTTTCGGTAAGC
TTGACGACGCCGCGTACGCTCGACTATCTCGTGCCGTAACTGCTTGGATA
AATGAGAGGCGGCATGCACATCAGGGTTAGTCCAAGCACGAGCGATGGTA
TCGGGGGTTGAACACTACAGCGAGCGCTACTTTGAGACTTCAAGAGAGTT
AGAATTCGATAGATACCAATCTGTCTTTGCTGCGGCGGTGAGGCAGTTTT
CAGGGTATGGTTTCCATGGGTTCGATTCGGTACTGTAGGACTCTTCCGTA
CTGATTGCTGCGAGTGTGCGCGGTACATCGGATGCGGCACTTTGCATAGC
AAGAGAGGTTGCATGGGGAGGCGGTCAATACATGTACATACACTTAAGAA
GGTCAGTCACCGGTCTTTCTTTTGTGTTTGGGTTTTTCCAGCATGCCCCC
CTGTAGTAGTCATGAGCTGTGCACCATAGCCTCTTCAAGAGTTCCAGTGC
AAGCTTGACGGGGCTCAAAGACAGCAGGAAACGGTCCCCAAGGTGAATGT
ATTATGTTTTTGCGTTCCATTTGAACGAAGGTGGCGTCTTTCCAGGGCAA
AATTGGCAAGGTCATAGCTAGGATAGCCGCGCGGGTTTTACGGGTGTTTG
GTGCCGTAAATAATGTTCTCCTCCTTACGTTTCGGCTTCGGTGGGGCAGA
CTCGCAACATCGTTTGCTGCTACCCGCTGGTTTCTTGAATTTCACGGGGT
TGGGTTCGGTGAGGGATATGAAACCATGTGTATCATGCGCTACAAGTAAC
GTATTGAATCCGCTTCACGCGTGATTCTCTTGCCCGGCGTTAAATTCCAC
ACCCTTTTCGGTCTAATCGACGGGGGGTGGTGAGAGAGTAGCACGCTCGC
ATTCCACGTTCTTCGCTTCCAGTGAAGGTGGCAATGGCGCTCCGCGCTGC
TTGTCTACCCGGGGCGGGCAAGGGGAAGCGAATGTCACTTACATGCACAA
AGTATGTGCTACTGTAGTATTGGATCACCATCCGAACTCAGGGCTGTGCG
ATTGCCTCGCTTTCAACAAAGGTGGGAACGGTCCTCCGTTCCGCATATCT
CACCGGGGCGGGAAAGGGGAAGGTTAGAATAAGAATGCCACCATATAGTG
TGCTGACGGATCACTATCCGGACACA
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protein sequence of EsuBft1515_2a-0001

>EsuBft1515_2 ID=EsuBft1515_2|Name=EsuBft1515_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=106bp
MIRKSKTREARKRPPALRRSHLLVATVMSATTVKIVESNRLVEFPSVFRC
MWNDLPHPAQFAIIFLMLALLFGVHRIFGKLDDAAYARLSRAVTAWINER
RHAHQG
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mRNA from alignment at Scaffold_228:136668..139432+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1515_2a-0001 ID=EsuBft1515_2a-0001|Name=EsuBft1515_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2765bp|location=Sequence derived from alignment at Scaffold_228:136668..139432+ (Ectocarpus subulatus male Bft15b)
GTTGGCAAGACTTGTTTCCTCCACGGACTCCTACGTTTTGTGAACTCGGG
GCTGCGGCGATGATCAGGAAGAGCAAGACCCGTGAGGCCCGCAAGCGACC
TCCCGCGCTACGAAGGTATAAATGACCAAACGTGATGCGAAATACTGGAG
CAACCCACCAACGACTGGCGACCCATCCGCGAACCACCTTATTCATGTGA
TACCTGCGGCATTCGGAATCTTTGGACCCTTGGAAGCGCCGTTGAGTAGT
GTCGGTTGCGCACCTTGGAGCTGTTGTGGCTTGTTGGATGGTAGTTCCGC
ACCGTTTGGTGTCGTTTTCTACAGTAGGTCTACAGGCCCTGAGGCGTTGG
GATAGAGGTTGTAGAACGCATGGTTGGCTGTGGGACGACGGTTGTTTCTC
TCTAGAAGCCAATGTGGAATCACGACGCCTCCGCAAGCGTGTTCCTGTTT
CCAGGGGGGCCATCCCTTGAGGAAGGAGTGGTCCTATTCAGGGCTCCCAT
ACTTACGTATTCGACCTGGTGTGCATGGTTCGAGTATGGTCGCACATGCG
ATGACAGCCATGTGTCACAGCACCGGAGACTCCCGAATCGTCGGCAATTC
GGGGCATAGACACTTTTGGGTGCGCCCGTGGAACGCACACTCCCGCCTTG
GTGCGGCAGGAGACGAGTGGTTTTGGAACTGTCAAGGGCATGACCCTTGT
CATGTGACTGTCGTTTACGTTGCTCGGTAATTCTTGCCTGCTTCACGCAC
ACAAACATGCAGTGACCGCTGACTCTGCCCTGTGTTACTCGTTTCATGTG
ATATTGCCCTACTCCCACTTGTTTGTTACCATTTTACGCCACTGCGGTAG
GTCCCACCTCCTGGTGGCGACCGTGATGTCAGCCACGACCGTGAAGATCG
TGGAAAGCAACAGTGAGTGGCGAACACTCCTGTTGTCGGCGGTGTTGCGT
GCTGGGGGGGGTCTGCCCACGGCGTCGAACTTGGAAACGCTGTGTCCATC
CTGCTCATGACCCCGCGATAGCCTACCGGAAATACCGCATGATACATGAT
ATCGAGTGCAGCTACAGCTTCAAGTGCGGTGGATGTACCTGTCGGGGGGT
ATTCGCTAGTCCTAGTTCATGGCGCGTCAGCTCAAATGCCCGGGACTCCT
AGCGTGTGTCTTGTGGGCTAGCGGAGGGGTGTCATGCGCAAATGGGTTTT
CGATTCCTCCCCCGCACCCGCGACTTTGCTTCTGGTGCATGCCGAGCAGG
GCTGGTTGAGTTTCCGTCGGTTTTCAGATGCATGTGGAACGACCTGCCGC
ACCCGGCTCAGTTCGCGATCATATTTCTGGTGAGTGAGGGCACTGCTGAC
CATACCCTCCACGCTGCAACGTGAGGTGGTTGGGGTAAAAAATTCTGTGT
ACGCAAGTAGTTATATTCTACGGCGTTGCTTAGGCTTGCGCTACTGCCGC
TGTGTGCCTCCAGTACAAAACCAAATGGCAGGATGTTTCGATAGCCGCCA
GTCGAACAAGCTCAAGTTGCCGTGTCGTCATCAAGAACCGAGCTCATTTC
GATTTCGGCGGCGTGGTGCGTGATGGTACTCCGAATCCCCCCACAGATGC
TTGCGCTCCTGTTCGGCGTCCACCGGATTTTCGGTAAGCTTGACGACGCC
GCGTACGCTCGACTATCTCGTGCCGTAACTGCTTGGATAAATGAGAGGCG
GCATGCACATCAGGGTTAGTCCAAGCACGAGCGATGGTATCGGGGGTTGA
ACACTACAGCGAGCGCTACTTTGAGACTTCAAGAGAGTTAGAATTCGATA
GATACCAATCTGTCTTTGCTGCGGCGGTGAGGCAGTTTTCAGGGTATGGT
TTCCATGGGTTCGATTCGGTACTGTAGGACTCTTCCGTACTGATTGCTGC
GAGTGTGCGCGGTACATCGGATGCGGCACTTTGCATAGCAAGAGAGGTTG
CATGGGGAGGCGGTCAATACATGTACATACACTTAAGAAGGTCAGTCACC
GGTCTTTCTTTTGTGTTTGGGTTTTTCCAGCATGCCCCCCTGTAGTAGTC
ATGAGCTGTGCACCATAGCCTCTTCAAGAGTTCCAGTGCAAGCTTGACGG
GGCTCAAAGACAGCAGGAAACGGTCCCCAAGGTGAATGTATTATGTTTTT
GCGTTCCATTTGAACGAAGGTGGCGTCTTTCCAGGGCAAAATTGGCAAGG
TCATAGCTAGGATAGCCGCGCGGGTTTTACGGGTGTTTGGTGCCGTAAAT
AATGTTCTCCTCCTTACGTTTCGGCTTCGGTGGGGCAGACTCGCAACATC
GTTTGCTGCTACCCGCTGGTTTCTTGAATTTCACGGGGTTGGGTTCGGTG
AGGGATATGAAACCATGTGTATCATGCGCTACAAGTAACGTATTGAATCC
GCTTCACGCGTGATTCTCTTGCCCGGCGTTAAATTCCACACCCTTTTCGG
TCTAATCGACGGGGGGTGGTGAGAGAGTAGCACGCTCGCATTCCACGTTC
TTCGCTTCCAGTGAAGGTGGCAATGGCGCTCCGCGCTGCTTGTCTACCCG
GGGCGGGCAAGGGGAAGCGAATGTCACTTACATGCACAAAGTATGTGCTA
CTGTAGTATTGGATCACCATCCGAACTCAGGGCTGTGCGATTGCCTCGCT
TTCAACAAAGGTGGGAACGGTCCTCCGTTCCGCATATCTCACCGGGGCGG
GAAAGGGGAAGGTTAGAATAAGAATGCCACCATATAGTGTGCTGACGGAT
CACTATCCGGACACA
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Coding sequence (CDS) from alignment at Scaffold_228:136668..139432+

>EsuBft1515_2a-0001 ID=EsuBft1515_2a-0001|Name=EsuBft1515_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=321bp|location=Sequence derived from alignment at Scaffold_228:136668..139432+ (Ectocarpus subulatus male Bft15b)
ATGATCAGGAAGAGCAAGACCCGTGAGGCCCGCAAGCGACCTCCCGCGCT
ACGAAGGTCCCACCTCCTGGTGGCGACCGTGATGTCAGCCACGACCGTGA
AGATCGTGGAAAGCAACAGGCTGGTTGAGTTTCCGTCGGTTTTCAGATGC
ATGTGGAACGACCTGCCGCACCCGGCTCAGTTCGCGATCATATTTCTGAT
GCTTGCGCTCCTGTTCGGCGTCCACCGGATTTTCGGTAAGCTTGACGACG
CCGCGTACGCTCGACTATCTCGTGCCGTAACTGCTTGGATAAATGAGAGG
CGGCATGCACATCAGGGTTAG
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