EsuBft1510_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1510_9a-0001
Unique NameEsuBft1510_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_350contigScaffold_350:50833..52319 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1510_9
Protein domainsSignalP-TM
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length111
Hectar predicted targeting categorymitochondrion
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1510_9aEsuBft1510_9aEctocarpus subulatus male Bft15bgeneScaffold_350 50833..52319 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1510_9a-0001-exonEsuBft1510_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_350 50833..51125 +
EsuBft1510_9a-0001-exonagat-exon-84421Ectocarpus subulatus male Bft15bexonScaffold_350 51501..52319 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1510_9a-0001-exonagat-five_prime_utr-2941Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_350 50833..51125 +
EsuBft1510_9a-0001-exonagat-five_prime_utr-2942Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_350 51501..51566 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1510_9a-0001-cdsEsuBft1510_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_350 51567..52319 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1510_9a-0001EsuBft1510_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_350 51567..52319 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1510_9a-0001 ID=EsuBft1510_9a-0001|Name=EsuBft1510_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1112bp|location=Sequence derived from alignment at Scaffold_350:50833..52319+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTTATCGGAGTCAAGTTCGAGATTGCCCAGAGCATATATTTGTGGTCGAT
GAGTCAAACTTCGGTTGTTCTCCCGCCGATTTTTCCTACACGACTTCGCT
TTGCTGTTTCATCCTGTCGCTACCCTGCCGATACATTCCGGCTCACTCTT
GTGGGCGAACTACTGTATTTGGAGCTGTATATCGAGGTGCAAGCCTTATC
AAGAGCTTGGTTTGACAATGGTTGGTCGTTTGAGAGAAAATCCAGCCAGG
ACCTAGTTGTCCGTCCCATTCTCTACCCATAACAAGGCCCCCGGGGGGCA
TGCACCAAGCTCACCGCCTTGACTGACTTCCCCGTGTGGTACATCTTTCG
TTACAAGAAATGTCACTTTTGCTGCACCATGCTCGCGCCAGGGTGTCGAT
CAAGCTCACCTCGGCAGCCCGCAGTAACGCGAGGACGCTAGCTGAAGTTG
CCAAGGCTTCGGCCGCGCCCGTACCGGTGGCGACGATTCTGCGGGGCCCC
TTGGTCGCGCACCGGGAGAGCGGTAAGCGCAACGGCAACAGCGACCACGG
GAGCGACAAGGACGACCACAGCTTCCTCGAGGACGACTTCAGCTTTGATG
ACGACGATTTCGAGAGCTCATCGAGCTCACCCACGGCGTGCCCGTTCAAG
GCTGCAGTAGAAACAACAGAGCTTGCTCAGAAGGCCAGGGACGAGCTTTG
CCTAGCGGAACTCGTAACGGAGAAGAGGAAGGATATGGTTGATGAGAAAA
TGCGGGATACCGATGTGACGTGGGTCCAACAGCTTTCCGTCAAAGCCATG
AACGCAGTCACTGCGGCATCGAACATGACTTCCGGTGCTGCTGCTGTCAT
GTATACGGCGAATCGCGGGGACCCCAGAAACCAGGCGATGGGTTCAACGG
CGGCGTTGACGGCGGCGGGAACGTGCTCGACGTCGGCCCCTTCCAGTACG
CCTCAACGGCGGAGATGGAAGCGCATCAACCGGAACGCCAATGCATCTGC
CGCAACCCCCCCCACGGGAACTTCTCAGCCAGGAGAGCGGGGGACCACCA
CCACAGCAGGTACTGGGTCAGATATCACTCCGTTATGGTGGAACACGTGG
TACACACACTAA
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protein sequence of EsuBft1510_9a-0001

>EsuBft1510_9 ID=EsuBft1510_9|Name=EsuBft1510_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=250bp
MSLLLHHARARVSIKLTSAARSNARTLAEVAKASAAPVPVATILRGPLVA
HRESGKRNGNSDHGSDKDDHSFLEDDFSFDDDDFESSSSSPTACPFKAAV
ETTELAQKARDELCLAELVTEKRKDMVDEKMRDTDVTWVQQLSVKAMNAV
TAASNMTSGAAAVMYTANRGDPRNQAMGSTAALTAAGTCSTSAPSSTPQR
RRWKRINRNANASAATPPTGTSQPGERGTTTTAGTGSDITPLWWNTWYTH
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mRNA from alignment at Scaffold_350:50833..52319+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1510_9a-0001 ID=EsuBft1510_9a-0001|Name=EsuBft1510_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1487bp|location=Sequence derived from alignment at Scaffold_350:50833..52319+ (Ectocarpus subulatus male Bft15b)
TTTATCGGAGTCAAGTTCGAGATTGCCCAGAGCATATATTTGTGGTCGAT
GAGTCAAACTTCGGTTGTTCTCCCGCCGATTTTTCCTACACGACTTCGCT
TTGCTGTTTCATCCTGTCGCTACCCTGCCGATACATTCCGGCTCACTCTT
GTGGGCGAACTACTGTATTTGGAGCTGTATATCGAGGTGCAAGCCTTATC
AAGAGCTTGGTTTGACAATGGTTGGTCGTTTGAGAGAAAATCCAGCCAGG
ACCTAGTTGTCCGTCCCATTCTCTACCCATAACAAGGCCCCCGGTATTGC
AACCACCCCAACCCTGACCTCCTTCAGAAACATAGGTGTCCCTCCCTTTC
TTAGCCCACAGCAAAGCTCCTATCTTTTGCAAAACTTTGAATAATGACGA
GAAATTGTCGACATGTGACGCACATTGACGCCAGCGATCCATGTTCCACA
TCTGCACGCACTGGTGCGGAACCATGATGGCGTACTGATGAGATGCCCAA
AACCTGCATCGCTGCTCTAGTTGCTTGCCATAGTGTCCACGAAACTGCGG
CGTGGGTGTTCGCGTCCATCAGTACTAACGCTCTCAATCGTTTGTCGTGT
TGTTCGTGCTGCTGCGAGACTTACCTACGGCCGTGAGAGATTCAAACAAC
AAATACGGGAATGTAAAGGGGGGCATGCACCAAGCTCACCGCCTTGACTG
ACTTCCCCGTGTGGTACATCTTTCGTTACAAGAAATGTCACTTTTGCTGC
ACCATGCTCGCGCCAGGGTGTCGATCAAGCTCACCTCGGCAGCCCGCAGT
AACGCGAGGACGCTAGCTGAAGTTGCCAAGGCTTCGGCCGCGCCCGTACC
GGTGGCGACGATTCTGCGGGGCCCCTTGGTCGCGCACCGGGAGAGCGGTA
AGCGCAACGGCAACAGCGACCACGGGAGCGACAAGGACGACCACAGCTTC
CTCGAGGACGACTTCAGCTTTGATGACGACGATTTCGAGAGCTCATCGAG
CTCACCCACGGCGTGCCCGTTCAAGGCTGCAGTAGAAACAACAGAGCTTG
CTCAGAAGGCCAGGGACGAGCTTTGCCTAGCGGAACTCGTAACGGAGAAG
AGGAAGGATATGGTTGATGAGAAAATGCGGGATACCGATGTGACGTGGGT
CCAACAGCTTTCCGTCAAAGCCATGAACGCAGTCACTGCGGCATCGAACA
TGACTTCCGGTGCTGCTGCTGTCATGTATACGGCGAATCGCGGGGACCCC
AGAAACCAGGCGATGGGTTCAACGGCGGCGTTGACGGCGGCGGGAACGTG
CTCGACGTCGGCCCCTTCCAGTACGCCTCAACGGCGGAGATGGAAGCGCA
TCAACCGGAACGCCAATGCATCTGCCGCAACCCCCCCCACGGGAACTTCT
CAGCCAGGAGAGCGGGGGACCACCACCACAGCAGGTACTGGGTCAGATAT
CACTCCGTTATGGTGGAACACGTGGTACACACACTAA
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Coding sequence (CDS) from alignment at Scaffold_350:50833..52319+

>EsuBft1510_9a-0001 ID=EsuBft1510_9a-0001|Name=EsuBft1510_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=753bp|location=Sequence derived from alignment at Scaffold_350:50833..52319+ (Ectocarpus subulatus male Bft15b)
ATGTCACTTTTGCTGCACCATGCTCGCGCCAGGGTGTCGATCAAGCTCAC
CTCGGCAGCCCGCAGTAACGCGAGGACGCTAGCTGAAGTTGCCAAGGCTT
CGGCCGCGCCCGTACCGGTGGCGACGATTCTGCGGGGCCCCTTGGTCGCG
CACCGGGAGAGCGGTAAGCGCAACGGCAACAGCGACCACGGGAGCGACAA
GGACGACCACAGCTTCCTCGAGGACGACTTCAGCTTTGATGACGACGATT
TCGAGAGCTCATCGAGCTCACCCACGGCGTGCCCGTTCAAGGCTGCAGTA
GAAACAACAGAGCTTGCTCAGAAGGCCAGGGACGAGCTTTGCCTAGCGGA
ACTCGTAACGGAGAAGAGGAAGGATATGGTTGATGAGAAAATGCGGGATA
CCGATGTGACGTGGGTCCAACAGCTTTCCGTCAAAGCCATGAACGCAGTC
ACTGCGGCATCGAACATGACTTCCGGTGCTGCTGCTGTCATGTATACGGC
GAATCGCGGGGACCCCAGAAACCAGGCGATGGGTTCAACGGCGGCGTTGA
CGGCGGCGGGAACGTGCTCGACGTCGGCCCCTTCCAGTACGCCTCAACGG
CGGAGATGGAAGCGCATCAACCGGAACGCCAATGCATCTGCCGCAACCCC
CCCCACGGGAACTTCTCAGCCAGGAGAGCGGGGGACCACCACCACAGCAG
GTACTGGGTCAGATATCACTCCGTTATGGTGGAACACGTGGTACACACAC
TAA
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