EsuBft1510_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1510_8a-0001
Unique Name	EsuBft1510_8a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_350	contig	Scaffold_350:53906..54658 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1510_8
Protein domains	SignalP-TM
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	75
Hectar predicted targeting category	mitochondrion
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1510_8a	EsuBft1510_8a	Ectocarpus subulatus male Bft15b	gene	Scaffold_350 53906..54658 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1510_8a-0001-exon	EsuBft1510_8a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_350 53906..54658 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1510_8a-0001-cds	EsuBft1510_8a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_350 53906..54658 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1510_8a-0001	EsuBft1510_8	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_350 53906..54658 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_350:53906..54658-
coding sequence from alignment at Scaffold_350:53906..54658-

spliced messenger RNA

>EsuBft1510_8a-0001 ID=EsuBft1510_8a-0001|Name=EsuBft1510_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=753bp|location=Sequence derived from alignment at Scaffold_350:53906..54658- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAACGTTCGCTGCACCATGCTCGCGCCAGGGTGTCGATCAAGCTCAC
CTCGGCAGCCCGCAGAAACGCGAGGACGCCAGCTGAAGTTGCCAAGGCTT
CGGCCGCGCCCGTACCGGCGGCGACGATTCTGCGGGGCCCCTTGGTCGCG
CACCGGGAGAGCGGTAAGCGCAACGGCAACAGCGACCACGGGAGCGACAA
GGACGACCACAGCTTCCTCGAGGACGACTTCAGCTTTGATGACGACGATT
TCGAGGGCTCATCGAGCTCACCCACGGCGTGCCCGTTCAAGGCTGCAGTA
GAAACAACAGAGCTTGCTCAGAAGGCCAGGGACGAGCTTTGCCTAGCGGA
ACTCGTAACGGAGAAGAGGAAGGATATGGTTGATGAGAAAATGCGGGATA
CCGATGTGACGTGGGTCCAACAGCTTTCCGTCAAAGCCATGAACGCAGTC
ACTGCGGCATCGAACATGACTTCCGGTGCTGCTGCTGTCATGTATACGGC
GAATCGCGGGGACCCCAGAAACCAGGCGATGGGTTCAACGGCGGCGTTGA
CGGCGGCGGGAACGTGCTCGACGTCGGCCCCTTCCAGTACGCCTCAACGG
CGGAGATGGAAGCGCATCAACCGGAACGCCAATGCATCTGCCGCAACCCC
CCCCACGGGAACTTCTCAGCCAGGAGAGCGGGGGACCACCACCACAGCAG
GTACTGGGTCAGATATCACTCCGTTATGGTGGAACACGTGGTACACACAC
TAA

protein sequence of EsuBft1510_8a-0001

>EsuBft1510_8 ID=EsuBft1510_8|Name=EsuBft1510_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=250bp
MQRSLHHARARVSIKLTSAARRNARTPAEVAKASAAPVPAATILRGPLVA
HRESGKRNGNSDHGSDKDDHSFLEDDFSFDDDDFEGSSSSPTACPFKAAV
ETTELAQKARDELCLAELVTEKRKDMVDEKMRDTDVTWVQQLSVKAMNAV
TAASNMTSGAAAVMYTANRGDPRNQAMGSTAALTAAGTCSTSAPSSTPQR
RRWKRINRNANASAATPPTGTSQPGERGTTTTAGTGSDITPLWWNTWYTH

mRNA from alignment at Scaffold_350:53906..54658-

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1510_8a-0001 ID=EsuBft1510_8a-0001|Name=EsuBft1510_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=753bp|location=Sequence derived from alignment at Scaffold_350:53906..54658- (Ectocarpus subulatus male Bft15b)
ATGCAACGTTCGCTGCACCATGCTCGCGCCAGGGTGTCGATCAAGCTCAC
CTCGGCAGCCCGCAGAAACGCGAGGACGCCAGCTGAAGTTGCCAAGGCTT
CGGCCGCGCCCGTACCGGCGGCGACGATTCTGCGGGGCCCCTTGGTCGCG
CACCGGGAGAGCGGTAAGCGCAACGGCAACAGCGACCACGGGAGCGACAA
GGACGACCACAGCTTCCTCGAGGACGACTTCAGCTTTGATGACGACGATT
TCGAGGGCTCATCGAGCTCACCCACGGCGTGCCCGTTCAAGGCTGCAGTA
GAAACAACAGAGCTTGCTCAGAAGGCCAGGGACGAGCTTTGCCTAGCGGA
ACTCGTAACGGAGAAGAGGAAGGATATGGTTGATGAGAAAATGCGGGATA
CCGATGTGACGTGGGTCCAACAGCTTTCCGTCAAAGCCATGAACGCAGTC
ACTGCGGCATCGAACATGACTTCCGGTGCTGCTGCTGTCATGTATACGGC
GAATCGCGGGGACCCCAGAAACCAGGCGATGGGTTCAACGGCGGCGTTGA
CGGCGGCGGGAACGTGCTCGACGTCGGCCCCTTCCAGTACGCCTCAACGG
CGGAGATGGAAGCGCATCAACCGGAACGCCAATGCATCTGCCGCAACCCC
CCCCACGGGAACTTCTCAGCCAGGAGAGCGGGGGACCACCACCACAGCAG
GTACTGGGTCAGATATCACTCCGTTATGGTGGAACACGTGGTACACACAC
TAA

Coding sequence (CDS) from alignment at Scaffold_350:53906..54658-

>EsuBft1510_8a-0001 ID=EsuBft1510_8a-0001|Name=EsuBft1510_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=753bp|location=Sequence derived from alignment at Scaffold_350:53906..54658- (Ectocarpus subulatus male Bft15b)
ATGCAACGTTCGCTGCACCATGCTCGCGCCAGGGTGTCGATCAAGCTCAC
CTCGGCAGCCCGCAGAAACGCGAGGACGCCAGCTGAAGTTGCCAAGGCTT
CGGCCGCGCCCGTACCGGCGGCGACGATTCTGCGGGGCCCCTTGGTCGCG
CACCGGGAGAGCGGTAAGCGCAACGGCAACAGCGACCACGGGAGCGACAA
GGACGACCACAGCTTCCTCGAGGACGACTTCAGCTTTGATGACGACGATT
TCGAGGGCTCATCGAGCTCACCCACGGCGTGCCCGTTCAAGGCTGCAGTA
GAAACAACAGAGCTTGCTCAGAAGGCCAGGGACGAGCTTTGCCTAGCGGA
ACTCGTAACGGAGAAGAGGAAGGATATGGTTGATGAGAAAATGCGGGATA
CCGATGTGACGTGGGTCCAACAGCTTTCCGTCAAAGCCATGAACGCAGTC
ACTGCGGCATCGAACATGACTTCCGGTGCTGCTGCTGTCATGTATACGGC
GAATCGCGGGGACCCCAGAAACCAGGCGATGGGTTCAACGGCGGCGTTGA
CGGCGGCGGGAACGTGCTCGACGTCGGCCCCTTCCAGTACGCCTCAACGG
CGGAGATGGAAGCGCATCAACCGGAACGCCAATGCATCTGCCGCAACCCC
CCCCACGGGAACTTCTCAGCCAGGAGAGCGGGGGACCACCACCACAGCAG
GTACTGGGTCAGATATCACTCCGTTATGGTGGAACACGTGGTACACACAC
TAA