Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7G3L2 |
| ProteomeId | EsuBft1510_5 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 3 |
| Max annot lvl | 2759|Eukaryota |
| Length | 130 |
| Hectar predicted targeting category | other localisation |
| Evalue | 3.2e-05 |
| EggNOG OGs | 2CZK4@1|root,2SARG@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1510_5a-0001 ID=EsuBft1510_5a-0001|Name=EsuBft1510_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1308bp|location=Sequence derived from alignment at Scaffold_350:78570..80357- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGGCGATCGAGGTGATGATGGCCACGAGTCTGGTCCGCAGCAACGCAC
CACGCCATCTCCACAGCCTAGTGCGCAGCAACAATCGATCGCCAGCTTTC
TCAATACCGGCTCGGGCGGCGGCGGCGGCGCCTCGGGCGGCGCTTCGGGC
AGCGGCGGCGGCGGAGATGGCCGCGGCCCGGAACCGCAAGCCTCCGCACC
ACAGGAGACTGATGTACAAAAATTGCAGTTTCCCGCACAAGTACCGGCCG
ATGTGAAGGCTGCTGTCCTCGTCTACCGGCCGCCGGATGGATATGCCATC
AGCGCCATCCACAACGTCAAGGGCAACCCGAGCTTTATTTCCTTTTGGGG
AGTGCGGATCCACACCACCCACACCACATCGGCGGGAACGAAGAAAAGGA
AGAACTTCTACAAGTGTATGGCCAACCATACGTGCCGCTCTAGCGTCAAA
CTACTGGCTTTGACGGGGTCGACCACGGGAGCCACGGAGCACTTGAAGAA
GGTGCATGAGATCGAGAGTCCTTCCAGCGCCGACGATAAGAAGAAGAAGC
AGGAGACGTTGGACAAGATCGACCAGGTCAAGCAGAGCAAAATCTACAAC
TCCGACAAGGCTCGCCACAACATGCTCGGCTTCACGAAAGCATTCGTCGT
CTACAGCGCCTGCTCTTTCAGGCTGGTAGAGCAAGAGCCAATCCGCCATT
GCCTCGGAGTGATGGTCCCGAAGGATGAGCTCGAACCGAACCGTCTCAAC
AACAAATCGGTACTAGACACCGCTCGTCGATGCCTATTGAAGAAAGAGAT
AGCATTCGGAGACACTTGTCGATATCCTATGGTGTGGATCAACGTAGCAG
CTCACACGGTGATCAACAGCTATCACCGGAGAAAACAGGGTGCGGCGAAA
CATCTCGGTCGGTTGTTGTGCGTTCAATAGGGTCTTATGGCTGGTCATCA
ACACCCATCGTAGGAAACCAATCGCTTGGCAAAGAAACGGTCGACGCTGA
TCGCACCCCTCGATGCTCATTCTAATTGACATGTCGATCCCCATCAGTCG
ACAACGATCCCCATCAGTCGAGAACAATAAGATCCCATCACCCATCACCT
GGAATCCTGTCATCGTTCAAGTGTTTAGGCTCATCGCATTAATACACGTG
ATCACAGATGCGCCCCCGGCATTGTAGGCGGGTGTGGGCTTTTTGCTTCT
CGGCTGGTCGGCGCTACCCTATCTTCCCTTACTCCATGTGATATCTGTTT
TTTTTTCTACTTTATATTTTCCCGTGTACTCTAGTTTTTGATGTACTGCT
GTAGCGCC back to topprotein sequence of EsuBft1510_5a-0001 >EsuBft1510_5 ID=EsuBft1510_5|Name=EsuBft1510_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=309bp
MGDRGDDGHESGPQQRTTPSPQPSAQQQSIASFLNTGSGGGGGASGGASG
SGGGGDGRGPEPQASAPQETDVQKLQFPAQVPADVKAAVLVYRPPDGYAI
SAIHNVKGNPSFISFWGVRIHTTHTTSAGTKKRKNFYKCMANHTCRSSVK
LLALTGSTTGATEHLKKVHEIESPSSADDKKKKQETLDKIDQVKQSKIYN
SDKARHNMLGFTKAFVVYSACSFRLVEQEPIRHCLGVMVPKDELEPNRLN
NKSVLDTARRCLLKKEIAFGDTCRYPMVWINVAAHTVINSYHRRKQGAAK
HLGRLLCVQ back to topmRNA from alignment at Scaffold_350:78570..80357- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1510_5a-0001 ID=EsuBft1510_5a-0001|Name=EsuBft1510_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1788bp|location=Sequence derived from alignment at Scaffold_350:78570..80357- (Ectocarpus subulatus male Bft15b)
ATGGGCGATCGAGGTGATGATGGCCACGAGTCTGGTCCGCAGCAACGCAC
CACGCCATCTCCACAGCCTAGTGCGCAGCAACAATCGATCGCCAGCTTTC
TCAATACCGGCTCGGGCGGCGGCGGCGGCGCCTCGGGCGGCGCTTCGGGC
AGCGGCGGCGGCGGAGATGGCCGCGGCCCGGAACCGCAAGCCTCCGCACC
ACAGGAGACTGATGTACAAAAATTGCAGTTTCCCGCACAAGTACCGGCCG
ATGTGAAGGCTGCTGTCCTCGTCTACCGGCCGCCGGATGGATATGCCATC
AGCGCCATCCACAACGTCAAGGGCAACCCGAGCTTTATTTCCTTTTGGGG
AGTGCGGATCCACACCACCCACACCACATCGGCGGGAACGAAGAAAAGGA
AGAACTTCTACAAGTGTATGGCCAACCATACGTGCCGCTCTAGCGTCAAA
CTACTGGCTTTGACGGGGTCGACCACGGGAGCCACGGAGCACTTGAAGAA
GGTGCATGAGATCGAGAGTCCTTCCAGCGCCGACGATAAGAAGAAGTAAG
TGCGTTCGTTTCGATATTGGTTTTCATGCTGTCGTAAAGATGTAAGATAC
AACAAACAGCAGTAGTAGTACAGATTTTACATGTATGTGTCGGGGAACCG
CCGGGGGAATCTTGTGTTTCAACACCCGAGTTCTTATTGTGTGGTCGCCA
CGGTCATCGGTGTGTCTTGTGTCTTGTGAATGCGTTGGCCGTACTAAGGG
AGAGCTACAATCGCTTGAGTTGCTGCGGAGTTACGCTGAAACGAACACGC
GCCGATCGTCCTCTGCTTATCATCTTGCTTGCAAAATATAATGCAGGAAG
CAGGAGACGTTGGACAAGATCGACCAGGTCAAGCAGAGCAAAATCTACAA
CTCCGACAAGGCTCGCCACAACATGCTCGGCTTCACGAAAGCATTCGTCG
TCTACAGCGCCTGCTCTTTCAGGCTGGTAGAGCAAGAGCCAATCCGCCAT
TGCCTCGGAGTGATGGTCCCGAAGGATGAGCTCGAACCGAACCGTCTCAA
CAACAAATCGGTAAGTCTATTGAGTTCATGAGTCTCTGGGGGTCGTGTGT
GGTGGTGGGTGGTGTAGTGTGGTGTGCTGCGGACCAAAAGTGCCCCTTAT
ACCTTGGATGATAAGGCTAAGAATAGGATCGATCGCCGGCGATAGGGTAG
GTTTTACGACCTATCGATAGGAATTGCCGCCCGCAATAGGTACTAGACAC
CGCTCGTCGATGCCTATTGAAGAAAGAGATAGCATTCGGAGACACTTGTC
GATATCCTATGGTGTGGATCAACGTAGCAGCTCACACGGTGATCAACAGC
TATCACCGGAGAAAACAGGGTGCGGCGAAACATCTCGGTCGGTTGTTGTG
CGTTCAATAGGGTCTTATGGCTGGTCATCAACACCCATCGTAGGAAACCA
ATCGCTTGGCAAAGAAACGGTCGACGCTGATCGCACCCCTCGATGCTCAT
TCTAATTGACATGTCGATCCCCATCAGTCGACAACGATCCCCATCAGTCG
AGAACAATAAGATCCCATCACCCATCACCTGGAATCCTGTCATCGTTCAA
GTGTTTAGGCTCATCGCATTAATACACGTGATCACAGATGCGCCCCCGGC
ATTGTAGGCGGGTGTGGGCTTTTTGCTTCTCGGCTGGTCGGCGCTACCCT
ATCTTCCCTTACTCCATGTGATATCTGTTTTTTTTTCTACTTTATATTTT
CCCGTGTACTCTAGTTTTTGATGTACTGCTGTAGCGCC back to topCoding sequence (CDS) from alignment at Scaffold_350:78570..80357- >EsuBft1510_5a-0001 ID=EsuBft1510_5a-0001|Name=EsuBft1510_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=930bp|location=Sequence derived from alignment at Scaffold_350:78570..80357- (Ectocarpus subulatus male Bft15b)
ATGGGCGATCGAGGTGATGATGGCCACGAGTCTGGTCCGCAGCAACGCAC
CACGCCATCTCCACAGCCTAGTGCGCAGCAACAATCGATCGCCAGCTTTC
TCAATACCGGCTCGGGCGGCGGCGGCGGCGCCTCGGGCGGCGCTTCGGGC
AGCGGCGGCGGCGGAGATGGCCGCGGCCCGGAACCGCAAGCCTCCGCACC
ACAGGAGACTGATGTACAAAAATTGCAGTTTCCCGCACAAGTACCGGCCG
ATGTGAAGGCTGCTGTCCTCGTCTACCGGCCGCCGGATGGATATGCCATC
AGCGCCATCCACAACGTCAAGGGCAACCCGAGCTTTATTTCCTTTTGGGG
AGTGCGGATCCACACCACCCACACCACATCGGCGGGAACGAAGAAAAGGA
AGAACTTCTACAAGTGTATGGCCAACCATACGTGCCGCTCTAGCGTCAAA
CTACTGGCTTTGACGGGGTCGACCACGGGAGCCACGGAGCACTTGAAGAA
GGTGCATGAGATCGAGAGTCCTTCCAGCGCCGACGATAAGAAGAAGAAGC
AGGAGACGTTGGACAAGATCGACCAGGTCAAGCAGAGCAAAATCTACAAC
TCCGACAAGGCTCGCCACAACATGCTCGGCTTCACGAAAGCATTCGTCGT
CTACAGCGCCTGCTCTTTCAGGCTGGTAGAGCAAGAGCCAATCCGCCATT
GCCTCGGAGTGATGGTCCCGAAGGATGAGCTCGAACCGAACCGTCTCAAC
AACAAATCGGTACTAGACACCGCTCGTCGATGCCTATTGAAGAAAGAGAT
AGCATTCGGAGACACTTGTCGATATCCTATGGTGTGGATCAACGTAGCAG
CTCACACGGTGATCAACAGCTATCACCGGAGAAAACAGGGTGCGGCGAAA
CATCTCGGTCGGTTGTTGTGCGTTCAATAG back to top
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