EsuBft1492_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1492_6a-0001
Unique NameEsuBft1492_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_630contigScaffold_630:766792..768553 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1492_6
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length47
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1492_6aEsuBft1492_6aEctocarpus subulatus male Bft15bgeneScaffold_630 766792..768553 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1492_6a-0001EsuBft1492_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_630 766792..767701 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1492_6a-0001-exonEsuBft1492_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_630 766792..767043 -
EsuBft1492_6a-0001-exonagat-exon-13689Ectocarpus subulatus male Bft15bexonScaffold_630 767591..767731 -
EsuBft1492_6a-0001-exonagat-exon-13688Ectocarpus subulatus male Bft15bexonScaffold_630 768471..768553 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1492_6a-0001-cdsEsuBft1492_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_630 766792..767043 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1492_6a-0001-exonagat-five_prime_utr-2840Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_630 767702..767731 -
EsuBft1492_6a-0001-exonagat-five_prime_utr-2841Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_630 768471..768553 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1492_6a-0001 ID=EsuBft1492_6a-0001|Name=EsuBft1492_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=476bp|location=Sequence derived from alignment at Scaffold_630:766792..768553- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GACGGCACGAGATCCTGCGGGCGGTCGTGGGCTGCTTCCTTCTAACCCTT
CTTTTCTACTTGCTCGATGCGAGACATCCCAAGTCGTCGCTATACTGCAC
GAGGCACGCGATTATGCCCGACAACGAACTCGAGGCTGCCAAGGGACTCC
ACGTAGAGGACATCGACTGCAGCCTGGTGGTGCGCCCGACCAGAACGGCG
CTCGATCTAAGGTTCTTCGGGGAGGTATCCTACAGCTTTGAGATAGTGGC
GGCGCGTCTCGTGAGGCCGCCGAAGCGCCCGCCGGACGCTAGGAGTGGCC
GCTGCCGCAACAAATGTTCACCGGGGAAGGCGTGTCCGTGCAACCGCGAC
AGTCCCGCGCGAAGCCGAAGGCTTGCGGAGGACTTCGAGCCGCTCGGGAA
GACGGAGGTCGCCATTAGTTTGCCTGAGGGGGACGGGGAGGGTCAGAAGG
GAGAGGCGGGGGGGGGGGGGGNNNNN
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protein sequence of EsuBft1492_6a-0001

>EsuBft1492_6 ID=EsuBft1492_6|Name=EsuBft1492_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=121bp
MPDNELEAAKGLHVEDIDCSLVVRPTRTALDLRFFGEVSYSFEIVAARLV
RPPKRPPDARSGRCRNKCSPGKACPCNRDSPARSRRLAEDFEPLGKTEVA
ISLPEGDGEGQKGEAGGGGXX
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mRNA from alignment at Scaffold_630:766792..768553-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1492_6a-0001 ID=EsuBft1492_6a-0001|Name=EsuBft1492_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1762bp|location=Sequence derived from alignment at Scaffold_630:766792..768553- (Ectocarpus subulatus male Bft15b)
GACGGCACGAGATCCTGCGGGCGGTCGTGGGCTGCTTCCTTCTAACCCTT
CTTTTCTACTTGCTCGATGCGAGACATCCCAAGGTATGTGTGGACTTCTC
ACCCAACAGACGTGGTCTCCGTGCATGGACGATGATCAACAAACGAATGT
GGTTGCTCTGCATAGACTGTGAACGAGGGTGGTCGCTACGCATGGACCAC
GAACAAATGTGGTTTCAATGCGTGGGCTCCTGTGAACGAACGCGGTTTCT
ATATATATATATAAGCACTCAAACAGGAGGTGGCGTTTTCGGCACTCGCT
GTGGACTTGACGGATTTGTATTGTAGCCTTTGGGTTTTCTCGATTGCGTG
CTCGCACCGCCTGCACCAGACGGTGTAGCGAAGAGCTACTTCTGTCCGGG
TTCGATTGTGAACGAGTGTTTCGTGAGATATAAGTATGCCGGAGAGACCG
GCAAGAGAACGTGTTTATTTGAGAGTCTGTCGATCTAGAAAAGCCCGCGC
CATGTAAAATAGCTCACCGATGGGAACGTAATCTCTTCGCAGCACTCACA
AGCACAACGGTTTGTAGTTCTTGGGGTTGAACGTGAACGTTTTCATATTA
CTGTAGCGAGTGTCAACCGTCAGTAGTAGCGGGCGGGCGTTTTTGATCTG
GCCTGGCATGACGGAATTCTCAGTGCAAGGAGCTAAGAACAGACTCCAAC
AAGTCTGATATTTTTTTGTCGCCCCCTTTCCTCCCTCGAATCATCGCTGA
ACTGCACGTTTGTTGCCGCTCTTCCTCCGCCTCCCATCTCAACCTTTTTT
ACCCTGGCGTGCCATCCTCAAGTCGTCGCTATACTGCACGAGGCACGCGA
TTATGCCCGACAACGAACTCGAGGCTGCCAAGGGACTCCACGTAGAGGAC
ATCGACTGCAGCCTGGTGGTGCGCCCGACCAGAACGGCGCTCGATCTAAG
GTTCTTCGGGGAGGTAAGGAGTCCGTCTCGAGAGAAGGAGCACTGGCCGT
CGAAAAATTCTTGGAACTTTCTCTTGTTCCCCCCTGGTGTGCAAGGTTCT
TCGAAGAGGTAATGGGATTAGAGTACTGGCCAATGTCTTGGAATGTCCTT
GTGTCAGTTTTATTGTGCGTCCTTGGTTCCCCTCGTGTGTAAGGTTCTTC
GGAGAGGTACGGGGAGTCGTTGAGAAAAGAGCACTGGCTAATTTCTTGGG
ATTTTCGTTGTTATTTTTTTTTTGTGCATTCTTGGTTGTTGATGTTTGTA
CAGCCCCGGTCGGTACAAGTGCTGTCGTTGTCGTTGTCGTCGTGTCGTTG
TCGTCTCTTTTGTGATGTTGCTGTTTTCCTTCGTTGCTGATGCGGAGGTA
TACGAACCACACCCACATCCTCTTACACTCACGTGTTCACTGGCCGGAGT
CCAAGAAAAGCTTTTCCCATCGTGCTCTGTGCTACCCCTCCCCGCCTCTC
CCCGCCGAGAGCTTGCAAAGGAACAACAACGCAACCCTCTCGCCAACCCC
CCACCGACAGGTATCCTACAGCTTTGAGATAGTGGCGGCGCGTCTCGTGA
GGCCGCCGAAGCGCCCGCCGGACGCTAGGAGTGGCCGCTGCCGCAACAAA
TGTTCACCGGGGAAGGCGTGTCCGTGCAACCGCGACAGTCCCGCGCGAAG
CCGAAGGCTTGCGGAGGACTTCGAGCCGCTCGGGAAGACGGAGGTCGCCA
TTAGTTTGCCTGAGGGGGACGGGGAGGGTCAGAAGGGAGAGGCGGGGGGG
GGGGGGGNNNNN
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Coding sequence (CDS) from alignment at Scaffold_630:766792..768553-

>EsuBft1492_6a-0001 ID=EsuBft1492_6a-0001|Name=EsuBft1492_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=363bp|location=Sequence derived from alignment at Scaffold_630:766792..768553- (Ectocarpus subulatus male Bft15b)
ATGCCCGACAACGAACTCGAGGCTGCCAAGGGACTCCACGTAGAGGACAT
CGACTGCAGCCTGGTGGTGCGCCCGACCAGAACGGCGCTCGATCTAAGGT
TCTTCGGGGAGGTATCCTACAGCTTTGAGATAGTGGCGGCGCGTCTCGTG
AGGCCGCCGAAGCGCCCGCCGGACGCTAGGAGTGGCCGCTGCCGCAACAA
ATGTTCACCGGGGAAGGCGTGTCCGTGCAACCGCGACAGTCCCGCGCGAA
GCCGAAGGCTTGCGGAGGACTTCGAGCCGCTCGGGAAGACGGAGGTCGCC
ATTAGTTTGCCTGAGGGGGACGGGGAGGGTCAGAAGGGAGAGGCGGGGGG
GGGGGGGGNNNNN
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