EsuBft1492_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1492_5a-0001
Unique Name	EsuBft1492_5a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_630	contig	Scaffold_630:771370..772562 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	6500.XP_005092035.1
ProteomeId	EsuBft1492_5
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	TRANSMEMBRANE
Protein domains	IPR000477
Protein domains	CYTOPLASMIC_DOMAIN
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	33208\|Metazoa
Length	119
Hectar predicted targeting category	other localisation
Evalue	1.55e-12
EggNOG OGs	KOG1075@1\|root,KOG1075@2759\|Eukaryota,39TZY@33154\|Opisthokonta,3BI15@33208\|Metazoa,3D94V@33213\|Bilateria
Date last modified	2016-06-14
Date creation	2016-06-14
Description	Ribonuclease H protein
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1492_5a	EsuBft1492_5a	Ectocarpus subulatus male Bft15b	gene	Scaffold_630 771370..772562 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1492_5a-0001-exon	EsuBft1492_5a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_630 771370..772562 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1492_5a-0001-exon	agat-three_prime_utr-4353	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_630 771370..771917 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1492_5a-0001-cds	EsuBft1492_5a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_630 771918..772562 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1492_5a-0001	EsuBft1492_5	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_630 771918..772562 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_630:771370..772562-
coding sequence from alignment at Scaffold_630:771370..772562-

spliced messenger RNA

>EsuBft1492_5a-0001 ID=EsuBft1492_5a-0001|Name=EsuBft1492_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1193bp|location=Sequence derived from alignment at Scaffold_630:771370..772562- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGGCGGTTATTCGCCACTTCCACGAGGGCATGAGGGCGCGCGTCCG
AACGGGCGACGGGCAGTACTCGGACTGGTTCGACGTGGGCCAAGGCCTCC
GACCGGGATACAACCTGGCCCCGCTGCTGTTCAACTTGTTCTTTGCCGCG
ATGCTCATGGTCGCCGTGCCCGAGTTCGACAGGGACTCCAAGGTGACGGC
GGACATGGTCAAGATCGGGACCCGAGTGGAGTACACAGGCAAGAAGGGCA
GGTCGGCGGGGAAGAAGACCACGGTGGTGACGGACGCGGAGGTCCTGTGG
GCCCTCTACGCTGACGACGCGGCCATCGTCTCGCGCTCGCCGGAGAGTCT
CGAGAAGATGATGTGGGTAATCGTGCGCGTGGCCGGCCTGTTCGGACTGA
TGGTATCGGAGCCAAAGACGGAGATCATGTGTGTGCTGCCGAAAGGGATC
GAGGAACGCCCGTTCATGGTCAGCGCCGCCGGCCAGACGTGCAAGCAGCA
GATTGGTTTGTGTTCCTCGGACGTACCATCTGCGTGGACGGGAAGGCCGA
CCGGGAGATCACGAGCCGCAGCTGCCGAGCGTGGAAGTGCTACCGCCGGA
ACGGTGCTTCGATGTACGACAGGCGACGGGCCGACCGCCAGCTAAGATCC
GGCTACTCCAGGCTGAAGTGGTGCAGACTCTCACGGGTGCGCCTCGTGGA
GCCTAACAGCGGAGCACTACACGAAGCTCAATGGGACCCACCGCCAGTTC
CTCACACGGTGCATCGGCTGGAGCAAGCGGAAACGCTCAGACCGCCCCCT
GTCCTATGCCCAGGCCCTCATCCAGGCAGGCTGCGAGGAAACCATCGAGG
CCACCGTGCGCAAACGGAGACTGTGTTTCGCGGGCTTNAAACCATCGAGG
CCACCGTGCGCAAACGGAGACTGTGTTTCGTGGGCTTTTTTTTTTTTTAT
GCGCATGGAGAACAACCGCCTCCCCAAGCGCATGCTGCTAGGAGCGATGG
CGGGAGGCGTGGGATACCGGGGCGGGCAGGAGAGCGACTGGGTGTCTCGT
CTAGGAGAGGACCTCGTGGCCTTCAATATGGGAGACGAAAAGGAAGGGAG
GAAATGAAAAGAGAGAGCGCCAAGGACCCGGAGGCGTGGTACAACAAGGT
CGAGGACGGGGCGGCATGGTTCATGAGGAAATGGCACAGGCAG

protein sequence of EsuBft1492_5a-0001

>EsuBft1492_5 ID=EsuBft1492_5|Name=EsuBft1492_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=214bp
MLAVIRHFHEGMRARVRTGDGQYSDWFDVGQGLRPGYNLAPLLFNLFFAA
MLMVAVPEFDRDSKVTADMVKIGTRVEYTGKKGRSAGKKTTVVTDAEVLW
ALYADDAAIVSRSPESLEKMMWVIVRVAGLFGLMVSEPKTEIMCVLPKGI
EERPFMVSAAGQTCKQQIGLCSSDVPSAWTGRPTGRSRAAAAERGSATAG
TVLRCTTGDGPTAS

mRNA from alignment at Scaffold_630:771370..772562-

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1492_5a-0001 ID=EsuBft1492_5a-0001|Name=EsuBft1492_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1193bp|location=Sequence derived from alignment at Scaffold_630:771370..772562- (Ectocarpus subulatus male Bft15b)
ATGCTGGCGGTTATTCGCCACTTCCACGAGGGCATGAGGGCGCGCGTCCG
AACGGGCGACGGGCAGTACTCGGACTGGTTCGACGTGGGCCAAGGCCTCC
GACCGGGATACAACCTGGCCCCGCTGCTGTTCAACTTGTTCTTTGCCGCG
ATGCTCATGGTCGCCGTGCCCGAGTTCGACAGGGACTCCAAGGTGACGGC
GGACATGGTCAAGATCGGGACCCGAGTGGAGTACACAGGCAAGAAGGGCA
GGTCGGCGGGGAAGAAGACCACGGTGGTGACGGACGCGGAGGTCCTGTGG
GCCCTCTACGCTGACGACGCGGCCATCGTCTCGCGCTCGCCGGAGAGTCT
CGAGAAGATGATGTGGGTAATCGTGCGCGTGGCCGGCCTGTTCGGACTGA
TGGTATCGGAGCCAAAGACGGAGATCATGTGTGTGCTGCCGAAAGGGATC
GAGGAACGCCCGTTCATGGTCAGCGCCGCCGGCCAGACGTGCAAGCAGCA
GATTGGTTTGTGTTCCTCGGACGTACCATCTGCGTGGACGGGAAGGCCGA
CCGGGAGATCACGAGCCGCAGCTGCCGAGCGTGGAAGTGCTACCGCCGGA
ACGGTGCTTCGATGTACGACAGGCGACGGGCCGACCGCCAGCTAAGATCC
GGCTACTCCAGGCTGAAGTGGTGCAGACTCTCACGGGTGCGCCTCGTGGA
GCCTAACAGCGGAGCACTACACGAAGCTCAATGGGACCCACCGCCAGTTC
CTCACACGGTGCATCGGCTGGAGCAAGCGGAAACGCTCAGACCGCCCCCT
GTCCTATGCCCAGGCCCTCATCCAGGCAGGCTGCGAGGAAACCATCGAGG
CCACCGTGCGCAAACGGAGACTGTGTTTCGCGGGCTTNAAACCATCGAGG
CCACCGTGCGCAAACGGAGACTGTGTTTCGTGGGCTTTTTTTTTTTTTAT
GCGCATGGAGAACAACCGCCTCCCCAAGCGCATGCTGCTAGGAGCGATGG
CGGGAGGCGTGGGATACCGGGGCGGGCAGGAGAGCGACTGGGTGTCTCGT
CTAGGAGAGGACCTCGTGGCCTTCAATATGGGAGACGAAAAGGAAGGGAG
GAAATGAAAAGAGAGAGCGCCAAGGACCCGGAGGCGTGGTACAACAAGGT
CGAGGACGGGGCGGCATGGTTCATGAGGAAATGGCACAGGCAG

Coding sequence (CDS) from alignment at Scaffold_630:771370..772562-

>EsuBft1492_5a-0001 ID=EsuBft1492_5a-0001|Name=EsuBft1492_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=645bp|location=Sequence derived from alignment at Scaffold_630:771370..772562- (Ectocarpus subulatus male Bft15b)
ATGCTGGCGGTTATTCGCCACTTCCACGAGGGCATGAGGGCGCGCGTCCG
AACGGGCGACGGGCAGTACTCGGACTGGTTCGACGTGGGCCAAGGCCTCC
GACCGGGATACAACCTGGCCCCGCTGCTGTTCAACTTGTTCTTTGCCGCG
ATGCTCATGGTCGCCGTGCCCGAGTTCGACAGGGACTCCAAGGTGACGGC
GGACATGGTCAAGATCGGGACCCGAGTGGAGTACACAGGCAAGAAGGGCA
GGTCGGCGGGGAAGAAGACCACGGTGGTGACGGACGCGGAGGTCCTGTGG
GCCCTCTACGCTGACGACGCGGCCATCGTCTCGCGCTCGCCGGAGAGTCT
CGAGAAGATGATGTGGGTAATCGTGCGCGTGGCCGGCCTGTTCGGACTGA
TGGTATCGGAGCCAAAGACGGAGATCATGTGTGTGCTGCCGAAAGGGATC
GAGGAACGCCCGTTCATGGTCAGCGCCGCCGGCCAGACGTGCAAGCAGCA
GATTGGTTTGTGTTCCTCGGACGTACCATCTGCGTGGACGGGAAGGCCGA
CCGGGAGATCACGAGCCGCAGCTGCCGAGCGTGGAAGTGCTACCGCCGGA
ACGGTGCTTCGATGTACGACAGGCGACGGGCCGACCGCCAGCTAA