EsuBft1492_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1492_3a-0001
Unique NameEsuBft1492_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_630contigScaffold_630:790978..794156 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1492_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length317
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1492_3aEsuBft1492_3aEctocarpus subulatus male Bft15bgeneScaffold_630 790978..794156 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1492_3a-0001-exonEsuBft1492_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_630 790978..794156 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1492_3a-0001-exonagat-three_prime_utr-4351Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_630 790978..793951 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1492_3a-0001-cdsEsuBft1492_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_630 793952..794125 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1492_3a-0001-exonagat-five_prime_utr-2839Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_630 794126..794156 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1492_3a-0001EsuBft1492_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_630 793952..794125 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1492_3a-0001 ID=EsuBft1492_3a-0001|Name=EsuBft1492_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3179bp|location=Sequence derived from alignment at Scaffold_630:790978..794156- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CAAGATTTTATTATCGACGATACTGACACCAATGCCATGGGGAAACATCG
AGGTAGAGGTAGAAAACGACCTCGACCAAATCACATATGGGACCCGAACA
CCAAGGTCGGGAAAATGCGCTTGGTTTGCGAGCGATCGAAACAGGCGTCG
GAAAGCAACCACCCACAATGCTACCCGCTATGGAGAAGACGAGACACCTG
GCTAGCCACTGCAAAAGACAAAGGGAATGTCCCTGTTGGTGCATACGAAC
CCCAACGGTGTGGCAGGCCATACCCCATATGGACCTCATCCGGGGAAGAT
AGCAATGTAGTGGGAGACCACTCCCCCGCAAGAACACAGTCACCATATAC
GCTATTGTGAACTTGTCGAATGGTCTGAAATATGTGGGACGCACGGTAGA
TAATCCGTATGCAAGATTTGCGGGGCATTTTGGTACCGGAGATCGGTTGA
GTAGGACACTAGACCTCGATTGGACTAGGTTTGCGGTTTTCGAGCTCGAG
ACACTCCCCCGTTACTTGCCGGAAGGCCATAGGTTTGGTACACTATTACA
CTGGCGGCAGAGGGAGAATTCCTGGATTGCATGCATGGACACTGTCAGAA
ATGGTTACAATACCAAGAGAGAAATTGCATGCCCCCCTAGACCAGGTTTG
CCTTCACATGGTTTTGGTACCCGACCGATCAAACGGTCTAGACACGAAGC
ACGCAAGACTACGAAAAATGGGGGTTGCCAGAAGAGGATGTTCCGGCCCC
GTGACTGGAAACGACGAATACAGTACCTTGCCAAGCTAATTCAGTACAAG
CCTTATAAAGTCGATGCCTACATCAAAGCGCTACACCAAAAAACGTGCTG
CGCATGATTAGGTATGTAGGGCAGGTGGGTATCACAGAGGATGTATGTGC
ATTTAGCGTTCCAGGCACTACGCAAAGCATACCTCGCGACTTTTCCCCCC
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNCTTGTTTTAGGTATGGTGACACCCTAG
ATAGTATGATGTTCAATACCACCAACGTAGCGAGAGATGTAAATCATGGT
AAATATTGATGCATCTGCAAAGACCCCCAATGGAGTCAGTACACGGTTGT
TGCCAAGGATGGTTCCAAATGTTTGATTACCACAGATGCCGGATGTCTTC
AGGATGACAACGCTGCAGCTGTGCTAAACCGACAAGCTGGTTTTAGAGCA
GAATATGCTGAAGCCTTGAATGACCTCTCTTTTTTTGAATCGCTCATAGA
CGCCATAGAATCGTACATTGGCGATTTATGTCATGAACTCAAAGTGCCAC
GCGATGACATTGAGGACTGGGAGGATACTTTGTGCGACGCGATAGAACAA
AAAGTGACTGNGAGCGGCCAACTGCATCTGTATCACTTGCAAGGCGTGCT
ATAATAGGTTAGCCAAAGCAGAACTTGAAGGACCGGGGTATAGGACAGTA
CACGGAGAGTTGGAGCTGGTGAAACAGACGACCATTGACCGACAACACAA
GTTTTTGCTAGATGAAAAGTTGCCCATCCCACAGCAGCAGTACAAAGACG
AGGATGGTGACACTCAGTATGAAAACACTGAGAAGTTACCCACACGATAC
CTCACTGCNGACGACCATTGACCGACAACATAAGTTTTTGCTAGATGAAA
AGTTGCCCATCCCACAGCAGCAGTACAAAGACGAGGATGGTGACACTCAG
TATGAAAACACTGAGAAGTTACCCACACGTTATCTCACTGCTAAACTACA
TAATAATCCGTTGGTAGCGACACGTGGAATTACGGCTTGTTGTGGTACGA
TAACAGAAGGGGTGGCTAAGGTAGTCAACGCAGTCCTGGTTGGTATCCGG
CCTTGTTTACACACGATCTGGCGTGAAGAATGCGCAAAAGTTGGTATTGC
TGCCAAGGAATGTTGGATTACCTCTAGCGGGGAAAGTCTTCTAGAAGTAG
CACAGGATATCGATATTCGAGCACAAATGGAGGGATGTACTGATGCGCAT
GTCTTCCAAACATTTGACTTCGTTGGTATGTACCCTAATATCCCTGTAGT
ACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACATTGGATG
GGAACGGGTCTGTAAATGGATAGATTTTATTTTGGATGAAGGATTTGTAC
AATTTGGGAACGGCATGTACCAACAAGCCTCCTCTGGTATCTTTATGGGA
ACGGCACCAGCTCCCGAACTAGCGACTATTTTTGCGTTTGTTTATGCATT
AATTCGATTTTTTGAAGGAACTTGTGGACGAGTATTTAACTGCTACACAC
GCTGGGACTACATCGTTGTATCCATTTGAATTTATTGAGCAGTATAGCAT
TGGTACAAAACGGTATATATATAGATTACATTTTTACGGTGCGATATTAT
GGTAACCAGACTGGACCAACATTTGAAGATATTATATATAAGGAGGGTAA
TCAATATGGTGGTATGTACCCAACGATGGTGTTAGATTTGAATGGTGATG
AGATAGACAACCCCGTTCGCGTTACCCAAGAAAAGTGTGGGAAATCAGCA
CACTTTCTGGATATGCAAATAGGGCAAGACATTCCTGGTAAGACTTGTAT
CGGTATGTATAATAAGCGCCAACATATGGCTACGCTGAAGAAGCAATATC
GGACATTCCCACATTGGGAAACAGTGTTATCTACTAGGTGTAAGATGTCG
ACGTTACACTGTCAAATGTGCCGATTTGCTATTAGATGTACTGACATTCG
ATTTTTCCAAGCTGCCACAGCCAGATTGATAGCTGACATGCTTGCACGTT
TCTATTCTAGTCGACTAATACGTAATACTTTACACAATTTCATGTTTACT
TTTTTTCGTACCTCGCCAGTGACTGCAAACATCGTGGGTGTAAATGCACC
TATGATGCGGAATTCATACTGGAAGAAAGTGGAGTTGGGTATGTATTTGG
AATCGAGTAGATACGAATGAAATTTTGGTCGATTAGCCGGCGTGCGATTA
TCTTTTACTTTATTGGGTAGTGTCTCGTT
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protein sequence of EsuBft1492_3a-0001

>EsuBft1492_3 ID=EsuBft1492_3|Name=EsuBft1492_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=57bp
MPWGNIEVEVENDLDQITYGTRTPRSGKCAWFASDRNRRRKATTHNATRY
GEDETPG
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mRNA from alignment at Scaffold_630:790978..794156-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1492_3a-0001 ID=EsuBft1492_3a-0001|Name=EsuBft1492_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3179bp|location=Sequence derived from alignment at Scaffold_630:790978..794156- (Ectocarpus subulatus male Bft15b)
CAAGATTTTATTATCGACGATACTGACACCAATGCCATGGGGAAACATCG
AGGTAGAGGTAGAAAACGACCTCGACCAAATCACATATGGGACCCGAACA
CCAAGGTCGGGAAAATGCGCTTGGTTTGCGAGCGATCGAAACAGGCGTCG
GAAAGCAACCACCCACAATGCTACCCGCTATGGAGAAGACGAGACACCTG
GCTAGCCACTGCAAAAGACAAAGGGAATGTCCCTGTTGGTGCATACGAAC
CCCAACGGTGTGGCAGGCCATACCCCATATGGACCTCATCCGGGGAAGAT
AGCAATGTAGTGGGAGACCACTCCCCCGCAAGAACACAGTCACCATATAC
GCTATTGTGAACTTGTCGAATGGTCTGAAATATGTGGGACGCACGGTAGA
TAATCCGTATGCAAGATTTGCGGGGCATTTTGGTACCGGAGATCGGTTGA
GTAGGACACTAGACCTCGATTGGACTAGGTTTGCGGTTTTCGAGCTCGAG
ACACTCCCCCGTTACTTGCCGGAAGGCCATAGGTTTGGTACACTATTACA
CTGGCGGCAGAGGGAGAATTCCTGGATTGCATGCATGGACACTGTCAGAA
ATGGTTACAATACCAAGAGAGAAATTGCATGCCCCCCTAGACCAGGTTTG
CCTTCACATGGTTTTGGTACCCGACCGATCAAACGGTCTAGACACGAAGC
ACGCAAGACTACGAAAAATGGGGGTTGCCAGAAGAGGATGTTCCGGCCCC
GTGACTGGAAACGACGAATACAGTACCTTGCCAAGCTAATTCAGTACAAG
CCTTATAAAGTCGATGCCTACATCAAAGCGCTACACCAAAAAACGTGCTG
CGCATGATTAGGTATGTAGGGCAGGTGGGTATCACAGAGGATGTATGTGC
ATTTAGCGTTCCAGGCACTACGCAAAGCATACCTCGCGACTTTTCCCCCC
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNCTTGTTTTAGGTATGGTGACACCCTAG
ATAGTATGATGTTCAATACCACCAACGTAGCGAGAGATGTAAATCATGGT
AAATATTGATGCATCTGCAAAGACCCCCAATGGAGTCAGTACACGGTTGT
TGCCAAGGATGGTTCCAAATGTTTGATTACCACAGATGCCGGATGTCTTC
AGGATGACAACGCTGCAGCTGTGCTAAACCGACAAGCTGGTTTTAGAGCA
GAATATGCTGAAGCCTTGAATGACCTCTCTTTTTTTGAATCGCTCATAGA
CGCCATAGAATCGTACATTGGCGATTTATGTCATGAACTCAAAGTGCCAC
GCGATGACATTGAGGACTGGGAGGATACTTTGTGCGACGCGATAGAACAA
AAAGTGACTGNGAGCGGCCAACTGCATCTGTATCACTTGCAAGGCGTGCT
ATAATAGGTTAGCCAAAGCAGAACTTGAAGGACCGGGGTATAGGACAGTA
CACGGAGAGTTGGAGCTGGTGAAACAGACGACCATTGACCGACAACACAA
GTTTTTGCTAGATGAAAAGTTGCCCATCCCACAGCAGCAGTACAAAGACG
AGGATGGTGACACTCAGTATGAAAACACTGAGAAGTTACCCACACGATAC
CTCACTGCNGACGACCATTGACCGACAACATAAGTTTTTGCTAGATGAAA
AGTTGCCCATCCCACAGCAGCAGTACAAAGACGAGGATGGTGACACTCAG
TATGAAAACACTGAGAAGTTACCCACACGTTATCTCACTGCTAAACTACA
TAATAATCCGTTGGTAGCGACACGTGGAATTACGGCTTGTTGTGGTACGA
TAACAGAAGGGGTGGCTAAGGTAGTCAACGCAGTCCTGGTTGGTATCCGG
CCTTGTTTACACACGATCTGGCGTGAAGAATGCGCAAAAGTTGGTATTGC
TGCCAAGGAATGTTGGATTACCTCTAGCGGGGAAAGTCTTCTAGAAGTAG
CACAGGATATCGATATTCGAGCACAAATGGAGGGATGTACTGATGCGCAT
GTCTTCCAAACATTTGACTTCGTTGGTATGTACCCTAATATCCCTGTAGT
ACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACATTGGATG
GGAACGGGTCTGTAAATGGATAGATTTTATTTTGGATGAAGGATTTGTAC
AATTTGGGAACGGCATGTACCAACAAGCCTCCTCTGGTATCTTTATGGGA
ACGGCACCAGCTCCCGAACTAGCGACTATTTTTGCGTTTGTTTATGCATT
AATTCGATTTTTTGAAGGAACTTGTGGACGAGTATTTAACTGCTACACAC
GCTGGGACTACATCGTTGTATCCATTTGAATTTATTGAGCAGTATAGCAT
TGGTACAAAACGGTATATATATAGATTACATTTTTACGGTGCGATATTAT
GGTAACCAGACTGGACCAACATTTGAAGATATTATATATAAGGAGGGTAA
TCAATATGGTGGTATGTACCCAACGATGGTGTTAGATTTGAATGGTGATG
AGATAGACAACCCCGTTCGCGTTACCCAAGAAAAGTGTGGGAAATCAGCA
CACTTTCTGGATATGCAAATAGGGCAAGACATTCCTGGTAAGACTTGTAT
CGGTATGTATAATAAGCGCCAACATATGGCTACGCTGAAGAAGCAATATC
GGACATTCCCACATTGGGAAACAGTGTTATCTACTAGGTGTAAGATGTCG
ACGTTACACTGTCAAATGTGCCGATTTGCTATTAGATGTACTGACATTCG
ATTTTTCCAAGCTGCCACAGCCAGATTGATAGCTGACATGCTTGCACGTT
TCTATTCTAGTCGACTAATACGTAATACTTTACACAATTTCATGTTTACT
TTTTTTCGTACCTCGCCAGTGACTGCAAACATCGTGGGTGTAAATGCACC
TATGATGCGGAATTCATACTGGAAGAAAGTGGAGTTGGGTATGTATTTGG
AATCGAGTAGATACGAATGAAATTTTGGTCGATTAGCCGGCGTGCGATTA
TCTTTTACTTTATTGGGTAGTGTCTCGTT
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Coding sequence (CDS) from alignment at Scaffold_630:790978..794156-

>EsuBft1492_3a-0001 ID=EsuBft1492_3a-0001|Name=EsuBft1492_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=174bp|location=Sequence derived from alignment at Scaffold_630:790978..794156- (Ectocarpus subulatus male Bft15b)
ATGCCATGGGGAAACATCGAGGTAGAGGTAGAAAACGACCTCGACCAAAT
CACATATGGGACCCGAACACCAAGGTCGGGAAAATGCGCTTGGTTTGCGA
GCGATCGAAACAGGCGTCGGAAAGCAACCACCCACAATGCTACCCGCTAT
GGAGAAGACGAGACACCTGGCTAG
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