EsuBft1481_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1481_8a-0001
Unique NameEsuBft1481_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_370contigScaffold_370:373714..375173 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G8B2
ProteomeIdEsuBft1481_8
Protein domainsIPR008915
Ownerapollo_admin@sb-roscoff.fr
Notezinc metalloprotease all3971 os:nostoc (strain pcc 7120 utex 2576) gn:all3971 pe:3 sv:1 [Automatic annotation]
Nb exon3
Max annot lvl2759|Eukaryota
Length457
Hectar predicted targeting categoryother localisation
Evalue3.25e-72
EggNOG OGsCOG0750@1|root,2QT40@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Descriptionmetalloendopeptidase activity
COG categoryM
Cross References
External references for this mRNA
DatabaseAccession
GO0006508
GO0004222
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1481_8aEsuBft1481_8aEctocarpus subulatus male Bft15bgeneScaffold_370 373714..375173 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1481_8a-0001-exonagat-exon-54436Ectocarpus subulatus male Bft15bexonScaffold_370 373714..373807 +
EsuBft1481_8a-0001-exonagat-exon-54435Ectocarpus subulatus male Bft15bexonScaffold_370 374275..374520 +
EsuBft1481_8a-0001-exonEsuBft1481_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_370 375057..375173 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1481_8a-0001-exonagat-five_prime_utr-2766Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_370 373714..373747 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1481_8a-0001-cdsEsuBft1481_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_370 373748..373807 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1481_8a-0001EsuBft1481_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_370 373748..375173 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1481_8a-0001 ID=EsuBft1481_8a-0001|Name=EsuBft1481_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=457bp|location=Sequence derived from alignment at Scaffold_370:373714..375173+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CTTGGCCCTCCTGGCGTCCTTGGGCGTCTTGACGATGGTAATCACGCTGC
ACGAGGTGGGACACCTTGTGGCGGCGCTATCGCAGGGCATCAAGGTGGAC
GCGTTTTCCGTCGGCCTAGGTCCGAAGCTACTCTCTTACCGCGCGGCGGA
CGGGAAGGGCGGATTATTGCAGGGGAAGCTTTCGGGGCCGTTCTCGTCCC
GGGAAAGCGTTGAAGAGATTAAAGTTGAGCCGGAGAAAAAGGAGGTAAAA
AAAGCAACCAGCATTTGGGCGTGGTCAAAGAAGAAAGAGGAGCCGAAAGA
AGAGGTGGTCGTGGAGAAGAAGGAGCCGGAAGGAGTGGAGTACGCACTCA
GGGTTCTCCCGGTGGGCGGCTACGTGAGCTTCCCGAACAACTACGAGGTA
GACGAGGATGGGGTGGTGACAGAGCTCGATGATCCCGACCTGCTGTACAA
CCGGTGA
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protein sequence of EsuBft1481_8a-0001

>EsuBft1481_8 ID=EsuBft1481_8|Name=EsuBft1481_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=140bp
MVITLHEVGHLVAALSQGIKVDAFSVGLGPKLLSYRAADGKGGLLQGKLS
GPFSSRESVEEIKVEPEKKEVKKATSIWAWSKKKEEPKEEVVVEKKEPEG
VEYALRVLPVGGYVSFPNNYEVDEDGVVTELDDPDLLYNR
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mRNA from alignment at Scaffold_370:373714..375173+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1481_8a-0001 ID=EsuBft1481_8a-0001|Name=EsuBft1481_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1460bp|location=Sequence derived from alignment at Scaffold_370:373714..375173+ (Ectocarpus subulatus male Bft15b)
CTTGGCCCTCCTGGCGTCCTTGGGCGTCTTGACGATGGTAATCACGCTGC
ACGAGGTGGGACACCTTGTGGCGGCGCTATCGCAGGGCATCAAGGTGAGG
AGGAGGAGGGTCGGGGTTGATCATTCTGCTTCCGCTTGCTGAGAAACGCC
AGGCACGGCTAGCCCCACTGTGTTGCTGTGCGTTTTGTGCTGCACTGAGC
AAGGCTGCGCCACTGCTGCTGGTCAGCTTGTAGTCCGTTCGATGCACGTC
CTCAGCGTGGGGAGTATTCGTCTGCAGGGCTGTTGTTTCCTGTTTTCGGC
AACGACACAAGGTAAAGTATTTATAGATGGACGCAAACCAACGACGAAGG
GCTTGCTTGTGCATCAATAGTGTCTCGACACACCCTCGTGGAGGTTCGGC
CAACACGATATGACACAACCTCGCGGCTGCCGCTGCCAGCAAGGCGACGA
GCTGCTATTTTTTGCGATGACACAACAATTTCGCCGCCGCTCACTCAAAG
TTTGGGTTGGACGTACCTTCTCCCCGATCTTTTTTTTTTTGTTCGTCACC
TCCTCGCCAAGGTGGACGCGTTTTCCGTCGGCCTAGGTCCGAAGCTACTC
TCTTACCGCGCGGCGGACGGGAAGGGCGGATTATTGCAGGGGAAGCTTTC
GGGGCCGTTCTCGTCCCGGGAAAGCGTTGAAGAGATTAAAGTTGAGCCGG
AGAAAAAGGAGGTAAAAAAAGCAACCAGCATTTGGGCGTGGTCAAAGAAG
AAAGAGGAGCCGAAAGAAGAGGTGGTCGTGGAGAAGAAGGAGCCGGAAGG
AGTGGAGGTGAGGTGGTCGGGGTGGGGATGGGTCCGCTATGAATGCGTGG
CCGGTGTTGCTCGTTGCCACGATGTTTGTGTTGTTGCTGATGTTAGTGGC
GGGGTTTGTGGTGGGGACTATGTTGGAGTTGCCCTCACTGTCGCTGTCGC
CGTTGTTGTTGTTGTTGTTGTTGTTACGCCTGTGGGCGCCTGATGGCGTT
GGAGCGAACATGGTGCTGTACATCCAAAGTGGCCGCGAGGCGCCCGGGTG
GGAGTGAGGTTGGTGCCCACCGCCCACGAGCGACCTTGCACATGTTATCC
CACTGTTGTACTACTTCGTCGCACAAAAACGATGTTTTTGTGACTTGGAC
TCATACCATGGTGCGAGTCGACGTGCTTCCTGAGCGTGATATCCATGCTT
TCTTTGATGGCATTGCTTCTTTTTTTTTTTCCCACGTCAGCTGCTGCTGT
TGGCGACACCCCGTCTTCTCCGGGCGTTCATGTTGACATCGTGCGCTCGC
ATTGTGCGGTGCTTACCCCCACGCCCTCTTCTTGCGCCGACAGTACGCAC
TCAGGGTTCTCCCGGTGGGCGGCTACGTGAGCTTCCCGAACAACTACGAG
GTAGACGAGGATGGGGTGGTGACAGAGCTCGATGATCCCGACCTGCTGTA
CAACCGGTGA
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Coding sequence (CDS) from alignment at Scaffold_370:373714..375173+

>EsuBft1481_8a-0001 ID=EsuBft1481_8a-0001|Name=EsuBft1481_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=423bp|location=Sequence derived from alignment at Scaffold_370:373714..375173+ (Ectocarpus subulatus male Bft15b)
ATGGTAATCACGCTGCACGAGGTGGGACACCTTGTGGCGGCGCTATCGCA
GGGCATCAAGGTGGACGCGTTTTCCGTCGGCCTAGGTCCGAAGCTACTCT
CTTACCGCGCGGCGGACGGGAAGGGCGGATTATTGCAGGGGAAGCTTTCG
GGGCCGTTCTCGTCCCGGGAAAGCGTTGAAGAGATTAAAGTTGAGCCGGA
GAAAAAGGAGGTAAAAAAAGCAACCAGCATTTGGGCGTGGTCAAAGAAGA
AAGAGGAGCCGAAAGAAGAGGTGGTCGTGGAGAAGAAGGAGCCGGAAGGA
GTGGAGTACGCACTCAGGGTTCTCCCGGTGGGCGGCTACGTGAGCTTCCC
GAACAACTACGAGGTAGACGAGGATGGGGTGGTGACAGAGCTCGATGATC
CCGACCTGCTGTACAACCGGTGA
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