EsuBft1481_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1481_6a-0001
Unique NameEsuBft1481_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_370contigScaffold_370:382948..385209 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G8B1
ProteomeIdEsuBft1481_6
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSignalP-noTM
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Max annot lvl2759|Eukaryota
Length87
Hectar predicted targeting categorysignal peptide
Evalue3.25e-48
EggNOG OGs2CMB2@1|root,2QPUP@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameKIAA1751
GOsGO:0000226,GO:0001539,GO:0001578,GO:0003341,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0032838,GO:0035082,GO:0040011,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0048870,GO:0051179,GO:0051674,GO:0060271,GO:0060285,GO:0060294,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038
Descriptionaxoneme assembly
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1481_6aEsuBft1481_6aEctocarpus subulatus male Bft15bgeneScaffold_370 382948..385209 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1481_6a-0001EsuBft1481_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_370 382948..385209 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1481_6a-0001-exonagat-exon-54430Ectocarpus subulatus male Bft15bexonScaffold_370 382948..383055 -
EsuBft1481_6a-0001-exonEsuBft1481_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_370 383351..383512 -
EsuBft1481_6a-0001-exonagat-exon-54431Ectocarpus subulatus male Bft15bexonScaffold_370 383901..384101 -
EsuBft1481_6a-0001-exonagat-exon-54429Ectocarpus subulatus male Bft15bexonScaffold_370 384481..384633 -
EsuBft1481_6a-0001-exonagat-exon-54428Ectocarpus subulatus male Bft15bexonScaffold_370 384961..385209 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1481_6a-0001-cdsEsuBft1481_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_370 382948..383055 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1481_6a-0001 ID=EsuBft1481_6a-0001|Name=EsuBft1481_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=873bp|location=Sequence derived from alignment at Scaffold_370:382948..385209- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTTTCACCATCCTTGCGGTGTGTCTGATAATATTGTCGGATAATGT
ATTTGAGAAATCTCGAGGGACGATACAACTTGATTCCGTGTGGGTTCTGT
CACCACCAACGGAGCAGGCGTTTTCCCTGGTACCATGCGAGGGGGGCGTG
CCTCCGGGTGAAAGCGTGACGGTCAAGGCGATCTTCAGCCCGGACTATTC
CCGTATCTGGCCCTTTCTGGGAGCATTTAGGATAGAAGCGAGGGACCAGG
TCTACGTTGAGGCTGCGCCACCGGGACAAAACCCCGGCGACCGTACCCCG
GAGGCCACCGAAGACGCGCTAGACCCTCGGAGTGGTCTTTTCAGCGGCGG
TCGGGGGTCGACCAAGGATGGAAGGTTGTTGCCGGCATCGGCTGGGGTAC
AGAGCGCTGCGCCAGCTCCTTCGCCGATCGTCCTTCGGTTCCCTAAGAGT
GACAACAGCCAACCCGCAACAGCGGAAGAGAAGGGCGGACGTGACCACGC
CAACGTCAAGGAGTCCTCGAGCAAGGCAACGGCGGTTATGCGGCTTATTG
CTGGGTGCCTAGCCATCAATGACCCTATAAAGTCGAGCGCGGGGTCTTTC
GAGATGGAGTTGAGTGCAGATGCTAGGGAAAAGGGCTTCAAGGTCACACC
GGAGAAAGGCAACATCCCTCCAGGCAGCACCGCGGACATTTCATGCGCGT
TTGAGCCACCTCCGCCGCCCCCGTCGTTGCCCGGCCCCGCGGGTGGAAAG
GGAGGTACCCCGGAGTGGTACAAGACCACGGCGTTCGTGCACCTCCGCGG
GGGCTACCGGCCGCCTGGGTCGAGCGAAGTCCACACCGTCTCAGTCCAGC
TAGAGGGTTTCATCACCGCCTAG
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protein sequence of EsuBft1481_6a-0001

>EsuBft1481_6 ID=EsuBft1481_6|Name=EsuBft1481_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=290bp
MRFTILAVCLIILSDNVFEKSRGTIQLDSVWVLSPPTEQAFSLVPCEGGV
PPGESVTVKAIFSPDYSRIWPFLGAFRIEARDQVYVEAAPPGQNPGDRTP
EATEDALDPRSGLFSGGRGSTKDGRLLPASAGVQSAAPAPSPIVLRFPKS
DNSQPATAEEKGGRDHANVKESSSKATAVMRLIAGCLAINDPIKSSAGSF
EMELSADAREKGFKVTPEKGNIPPGSTADISCAFEPPPPPPSLPGPAGGK
GGTPEWYKTTAFVHLRGGYRPPGSSEVHTVSVQLEGFITA
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mRNA from alignment at Scaffold_370:382948..385209-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1481_6a-0001 ID=EsuBft1481_6a-0001|Name=EsuBft1481_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2262bp|location=Sequence derived from alignment at Scaffold_370:382948..385209- (Ectocarpus subulatus male Bft15b)
ATGCGTTTCACCATCCTTGCGGTGTGTCTGATAATATTGTCGGATAATGT
ATTTGAGAAATCTCGAGGGACGATACAACTTGATTCCGTGTGGGTTCTGT
CACCACCAACGGAGCAGGCGTTTTCCCTGGTACCATGCGAGGGGGGCGTG
CCTCCGGGTGAAAGCGTGACGGTCAAGGCGATCTTCAGCCCGGACTATTC
CCGTATCTGGCCCTTTCTGGGAGCATTTAGGATAGAAGCGAGGGACCAGG
TGAGGAGCGAACGAAAAAACAAGTTCGACACCCTCATGATTGCAACAATA
ATAACAACGACAACGCAACAACATCGACGCACACGTTCCCACCTTAGATT
TGGCGGTAGAATATTCTAACAATTTATCGCTCGCCGCGTGTTTGTTGACA
AGAAGGGAGATGGCTGGCCCATACACCGACCTATCCTCTCTCGCTCGCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCTC
TCTCTCGGTGCTCTCATTCATGCAGCCCGAAGGTGGACACCTGCTTCGTG
TTCGCGGTCGATGTCTTCCACGACAGGTCTACGTTGAGGCTGCGCCACCG
GGACAAAACCCCGGCGACCGTACCCCGGAGGCCACCGAAGACGCGCTAGA
CCCTCGGAGTGGTCTTTTCAGCGGCGGTCGGGGGTCGACCAAGGATGGAA
GGTTGTTGCCGGCATCGGCTGGGGTACAGGTAAATGCGCAACAGCCTTCG
GAAAACACCCTGGGTCGGCAGCTTTGGCGCGTTTCATGCTGCCCGCGAGG
TGTTCCGTACGTGTTGATGTGCGTTTGTACGCCCGGGGGCGTTTTCGGCA
GCCCGGAAGGCGTTGTCACCCGCAGAATTCGTGCTTCCCGAAGTTTTCCC
GACGCTAACCGTCCCGCCTATTCTTTGTGATTCTGCTCTTTGCGAGGTGG
CTATCTGCCTCACAACGACAGGACTTCGAGAACAGAACTTGGACATTCAT
CCTCACAAGGAGACGAGTGTTAAAGCACAATTGTTTTGTCATTAGCAACC
TCCATCGCGCGGTGCGCTTCCGTGGCGCTTTCTGATTGTCCGGTATTTTC
CGCCGCAGAGCGCTGCGCCAGCTCCTTCGCCGATCGTCCTTCGGTTCCCT
AAGAGTGACAACAGCCAACCCGCAACAGCGGAAGAGAAGGGCGGACGTGA
CCACGCCAACGTCAAGGAGTCCTCGAGCAAGGCAACGGCGGTTATGCGGC
TTATTGCTGGGTGCCTAGCCATCAATGACCCTATAAAGTCGAGCGCGGGG
TCTTTCGAGGTTTGTTTCACGGTTGTTGCAGTGGCATGGGCTATGTTCGT
ACTTTTTTTCGTGCGGGTCCTCCGTATTTGTCACCAATTTCGATCAACGA
CCTCGGGCGCATCTGATACGTGTCCCTGCGCTGCTGTACTGCCATGTTTG
CGCGTTGCAAGAGTTGACCATGTTAAGGGGTTGGATCCAATCCGCCGTAA
GCAGTATTATTATCCATTTCGCGAGCAGATAATATTGCCTTACAGCACAA
AACAACGTGCCCACTGCAGCCGAACACAAACCGCACGCGCTCATAGTAAG
TACCCCACGCAAACGATCTCCCCACGCACGACAAGGACCTCGTGCACAGA
AATAGCTCAAATATTTTCATCGATCGTTGTGCACCCGACACGCGTAGATG
GAGTTGAGTGCAGATGCTAGGGAAAAGGGCTTCAAGGTCACACCGGAGAA
AGGCAACATCCCTCCAGGCAGCACCGCGGACATTTCATGCGCGTTTGAGC
CACCTCCGCCGCCCCCGTCGTTGCCCGGCCCCGCGGGTGGAAAGGGAGGT
ACCCCGGAGGTACGACTCTCAAGCCGTAGACTATAGCTCGAACACACACC
CCAAGTTCTACCCCAACCTCTCTCTACGCCATTCATTGTCATCTCCCCAC
CCCGGAGTTTCGGACAACGACATAAAAAGTTACTATTCGCACGATGCGTT
CGGAACCACACGCGCGAGTCGACGTGTACGTGTAGTAAGAGCTCGATGAG
AACGGGATTATTGGCACGGCCATTCCTCTCCAATGTACGATTCCACAACT
TGTCCTATCCGGTGTTTCTGAATCCCTCTTTTACGCGCGTACAAGGTGGG
TCAGTGGTACAAGACCACGGCGTTCGTGCACCTCCGCGGGGGCTACCGGC
CGCCTGGGTCGAGCGAAGTCCACACCGTCTCAGTCCAGCTAGAGGGTTTC
ATCACCGCCTAG
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Coding sequence (CDS) from alignment at Scaffold_370:382948..385209-

>EsuBft1481_6a-0001 ID=EsuBft1481_6a-0001|Name=EsuBft1481_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=873bp|location=Sequence derived from alignment at Scaffold_370:382948..385209- (Ectocarpus subulatus male Bft15b)
ATGCGTTTCACCATCCTTGCGGTGTGTCTGATAATATTGTCGGATAATGT
ATTTGAGAAATCTCGAGGGACGATACAACTTGATTCCGTGTGGGTTCTGT
CACCACCAACGGAGCAGGCGTTTTCCCTGGTACCATGCGAGGGGGGCGTG
CCTCCGGGTGAAAGCGTGACGGTCAAGGCGATCTTCAGCCCGGACTATTC
CCGTATCTGGCCCTTTCTGGGAGCATTTAGGATAGAAGCGAGGGACCAGG
TCTACGTTGAGGCTGCGCCACCGGGACAAAACCCCGGCGACCGTACCCCG
GAGGCCACCGAAGACGCGCTAGACCCTCGGAGTGGTCTTTTCAGCGGCGG
TCGGGGGTCGACCAAGGATGGAAGGTTGTTGCCGGCATCGGCTGGGGTAC
AGAGCGCTGCGCCAGCTCCTTCGCCGATCGTCCTTCGGTTCCCTAAGAGT
GACAACAGCCAACCCGCAACAGCGGAAGAGAAGGGCGGACGTGACCACGC
CAACGTCAAGGAGTCCTCGAGCAAGGCAACGGCGGTTATGCGGCTTATTG
CTGGGTGCCTAGCCATCAATGACCCTATAAAGTCGAGCGCGGGGTCTTTC
GAGATGGAGTTGAGTGCAGATGCTAGGGAAAAGGGCTTCAAGGTCACACC
GGAGAAAGGCAACATCCCTCCAGGCAGCACCGCGGACATTTCATGCGCGT
TTGAGCCACCTCCGCCGCCCCCGTCGTTGCCCGGCCCCGCGGGTGGAAAG
GGAGGTACCCCGGAGTGGTACAAGACCACGGCGTTCGTGCACCTCCGCGG
GGGCTACCGGCCGCCTGGGTCGAGCGAAGTCCACACCGTCTCAGTCCAGC
TAGAGGGTTTCATCACCGCCTAG
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