EsuBft1481_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1481_4a-0001
Unique NameEsuBft1481_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_370contigScaffold_370:402878..403162 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G8B1
ProteomeIdEsuBft1481_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl2759|Eukaryota
Length28
Hectar predicted targeting categoryother localisation
Evalue2.62e-45
EggNOG OGs2CMB2@1|root,2QPUP@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameKIAA1751
GOsGO:0000226,GO:0001539,GO:0001578,GO:0003341,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0032838,GO:0035082,GO:0040011,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0048870,GO:0051179,GO:0051674,GO:0060271,GO:0060285,GO:0060294,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038
Descriptionaxoneme assembly
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1481_4aEsuBft1481_4aEctocarpus subulatus male Bft15bgeneScaffold_370 402878..403162 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1481_4a-0001-exonEsuBft1481_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_370 402878..403162 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1481_4a-0001-cdsEsuBft1481_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_370 402878..403162 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1481_4a-0001EsuBft1481_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_370 402878..403162 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1481_4a-0001 ID=EsuBft1481_4a-0001|Name=EsuBft1481_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=285bp|location=Sequence derived from alignment at Scaffold_370:402878..403162- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACCACTATCCAAAAATGGTAGAAGCTGGCTCCGCACCCAACGGCCT
CAACAAACGTGAGCCTCGGTCTGCTTCCCAGCTCAACGAAACAAGTTTGG
ATGAAGGCTTGCATCAATGGGACCAAGCCATGTCTGCCGGGGCGGTCACC
CCGTCCTACAGCCTAGATATTGAGGAACTCGAGGCTGTCCAGCGTTACAA
GCGTATCATGCTCGACGATGCTGCCAGCTCGACGTCCTTCGGGAAAGGAG
GTGCACGTCTGCCTAGAGCCACACAGGTATTATGA
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protein sequence of EsuBft1481_4a-0001

>EsuBft1481_4 ID=EsuBft1481_4|Name=EsuBft1481_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=94bp
MNHYPKMVEAGSAPNGLNKREPRSASQLNETSLDEGLHQWDQAMSAGAVT
PSYSLDIEELEAVQRYKRIMLDDAASSTSFGKGGARLPRATQVL
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mRNA from alignment at Scaffold_370:402878..403162-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1481_4a-0001 ID=EsuBft1481_4a-0001|Name=EsuBft1481_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=285bp|location=Sequence derived from alignment at Scaffold_370:402878..403162- (Ectocarpus subulatus male Bft15b)
ATGAACCACTATCCAAAAATGGTAGAAGCTGGCTCCGCACCCAACGGCCT
CAACAAACGTGAGCCTCGGTCTGCTTCCCAGCTCAACGAAACAAGTTTGG
ATGAAGGCTTGCATCAATGGGACCAAGCCATGTCTGCCGGGGCGGTCACC
CCGTCCTACAGCCTAGATATTGAGGAACTCGAGGCTGTCCAGCGTTACAA
GCGTATCATGCTCGACGATGCTGCCAGCTCGACGTCCTTCGGGAAAGGAG
GTGCACGTCTGCCTAGAGCCACACAGGTATTATGA
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Coding sequence (CDS) from alignment at Scaffold_370:402878..403162-

>EsuBft1481_4a-0001 ID=EsuBft1481_4a-0001|Name=EsuBft1481_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=285bp|location=Sequence derived from alignment at Scaffold_370:402878..403162- (Ectocarpus subulatus male Bft15b)
ATGAACCACTATCCAAAAATGGTAGAAGCTGGCTCCGCACCCAACGGCCT
CAACAAACGTGAGCCTCGGTCTGCTTCCCAGCTCAACGAAACAAGTTTGG
ATGAAGGCTTGCATCAATGGGACCAAGCCATGTCTGCCGGGGCGGTCACC
CCGTCCTACAGCCTAGATATTGAGGAACTCGAGGCTGTCCAGCGTTACAA
GCGTATCATGCTCGACGATGCTGCCAGCTCGACGTCCTTCGGGAAAGGAG
GTGCACGTCTGCCTAGAGCCACACAGGTATTATGA
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