EsuBft1481_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1481_3a-0001
Unique NameEsuBft1481_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_370contigScaffold_370:411206..413117 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1481_3
Protein domainsTMhelix
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsIPR001138
Protein domainsTRANSMEMBRANE
Protein domainsCYTOPLASMIC_DOMAIN
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Length58
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Cross References
External references for this mRNA
DatabaseAccession
GO0005515
GO0000981
GO0003824
GO0008270
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1481_3aEsuBft1481_3aEctocarpus subulatus male Bft15bgeneScaffold_370 411206..413117 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1481_3a-0001-exonagat-exon-54410Ectocarpus subulatus male Bft15bexonScaffold_370 411206..411242 -
EsuBft1481_3a-0001-exonagat-exon-54411Ectocarpus subulatus male Bft15bexonScaffold_370 411338..411543 -
EsuBft1481_3a-0001-exonEsuBft1481_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_370 412391..412677 -
EsuBft1481_3a-0001-exonagat-exon-54409Ectocarpus subulatus male Bft15bexonScaffold_370 413066..413117 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1481_3a-0001-cdsEsuBft1481_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_370 411206..411242 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1481_3a-0001EsuBft1481_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_370 411206..413117 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1481_3a-0001 ID=EsuBft1481_3a-0001|Name=EsuBft1481_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=582bp|location=Sequence derived from alignment at Scaffold_370:411206..413117- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCTGTGACTTCGTGTCCACAAATGGCAGCGATGAGGCTGTTCTTGC
TGCATTGGCTTGTATCAATGGCTCAAGTGCTTGCGTCGTGTTGTTGCCGC
TTCAGAAAAAGTGCTCTGCACCGTTCGGCAAGGACAACCCGTGCCGGTCG
TGCCGAAAGAACGGGGTTGATTGCGTCTTCTCTGACCGGCAGAACCCGGG
GCCCAAGGCAAAAGGGGCAACAGGAGTGCCAAGCTTACCGGGAGAGATAT
CCGTCACCCAGGGCGGAAGCGCGGGTAGGACCGTCAAAGAATCTGCGAGG
GCAGCGTCGGGGCGCGCACGGCCGGCGAGCCGTCTAACGCGATCGTGTCG
CCACCATGCACGGCCCGCCTCTCGCGTGACCAACTGCTTGCCCACCAGGC
GACTGGCGGTCGATGCCAATAGCTCCGATGCCGCACAGACGTCGGTCGCT
GGGGCGACGGCCAACAACAGCGATCGCCAGAAGGAACTGCGGGTGGAGAT
GCACGCCATCGGTGATAGCTTGAACGCCAGGTGGGTCAATTTCAAAGGAG
AGTCGTGGAGGGTCACGGACGACTTGCGGTAG
back to top

protein sequence of EsuBft1481_3a-0001

>EsuBft1481_3 ID=EsuBft1481_3|Name=EsuBft1481_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=193bp
MSCDFVSTNGSDEAVLAALACINGSSACVVLLPLQKKCSAPFGKDNPCRS
CRKNGVDCVFSDRQNPGPKAKGATGVPSLPGEISVTQGGSAGRTVKESAR
AASGRARPASRLTRSCRHHARPASRVTNCLPTRRLAVDANSSDAAQTSVA
GATANNSDRQKELRVEMHAIGDSLNARWVNFKGESWRVTDDLR
back to top

mRNA from alignment at Scaffold_370:411206..413117-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1481_3a-0001 ID=EsuBft1481_3a-0001|Name=EsuBft1481_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1912bp|location=Sequence derived from alignment at Scaffold_370:411206..413117- (Ectocarpus subulatus male Bft15b)
ATGTCCTGTGACTTCGTGTCCACAAATGGCAGCGATGAGGCTGTTCTTGC
TGGTACTTCAGTGCTCTTTAGGCGTTGCAGACTCCGACGTGTTACGGCCT
CATTTCCACCAAATGTTTAACGGGTTGGACGGTACCACAACCCCCAACCA
CCTCACACGACGAACAACTATCCCAATGTAAAGGATCAGCAAGCGGTCTG
ATAGTATGCGTGTCCCTGCACGTGAGGAGCGAAGCAAAATCAAAGTCGAC
CAGATGAAAGAAAGATGTAGGCGATCGTGCCAGGGCCTGCTGAAACGTCC
CTGTTGTTTGTCTCATGGGGCACGAAGGATTGCGGAATAGTCAGGTGTGG
CAGTCCGCCTGATCTGTACTGAAAAATGGCCTCCCTGCACAGCAGAATTT
TGCATGAATCAGCATTGGTAAGCCCGCCCCACTCACATAGCATTGGCTTG
TATCAATGGCTCAAGTGCTTGCGTCGTGTTGTTGCCGCTTCAGAAAAAGT
GCTCTGCACCGTTCGGCAAGGACAACCCGTGCCGGTCGTGCCGAAAGAAC
GGGGTTGATTGCGTCTTCTCTGACCGGCAGAACCCGGGGCCCAAGGCAAA
AGGGGCAACAGGAGTGCCAAGCTTACCGGGAGAGATATCCGTCACCCAGG
GCGGAAGCGCGGGTAGGACCGTCAAAGAATCTGCGAGGGCAGCGTCGGGG
CGCGCACGGCCGGCGAGCCGTCTAACGGTACGAGATCGATGTACACCCTG
TAAGCTCCTACACAGTACAGGGCCGCCTGCGTCGTGTTGCCTGGGAAACT
AGGTTCCCCTTGGTGCTCCATGGGCATCTAGTTTGGAAATTAATACTTCT
CATATGCATCATCGCTCGTGAATCATCGATCGACATGCTTTCAACCTTTT
CCTGCACGGTCCAAGAATAGCCACCATTGAAACTGATCGCTGTGCGTTAG
ATCTCGTTGCCGACATTCATTGTCGCCGTCCTCCGCGTGCCATAACGAAA
TTCCATACCCCAAGGGATAACTTCTACTCGATCAATTTTCGCAGCCGCGG
CCGAGTGAGCTCAACTTGCGTACCATGGTAGCTGTTTCACGTCAACAATT
TATGGTTGGTAGGACCCCACAATCCTTTCGCAGGCCAGACAACATGAAGT
CGCCCAACCCGCCAGAAGTTTTGCCAGTCTGTTGCATTGTATACGTGTAC
TGACCAAGGACGATCCAGGCTGGGAGAATCCTCTTCATCCCCCCTGCTCA
ATTGCGTACAACCCAGCCTCTCTATGAAGCGGAGAATGCTGGATCGACAT
CAGCCCTCGGTGCAAGCGAAGGCCTTGCTTCCAGGTGGACAACGGCATAC
TGGTGGGTTGTAAGGGATATTGTTCGTGAAACTGATGGATAGTTTCAAAT
GTGATGAGGCTCCATTCCTACGAGCTACCAATGGTAGAAGTCAGGTTGTC
CTTCCCGTGGGTTTTACACGAACTCGTGGACATAGTGAAGTGAGGTGAGG
AATACTGTCAAGTGGAAGATGGGAGCTTGAATTCTGATGGACGCCCCCGC
GCGTATACATCTGCGGCTGTTCAGCGATCGTGTCGCCACCATGCACGGCC
CGCCTCTCGCGTGACCAACTGCTTGCCCACCAGGCGACTGGCGGTCGATG
CCAATAGCTCCGATGCCGCACAGACGTCGGTCGCTGGGGCGACGGCCAAC
AACAGCGATCGCCAGAAGGAACTGCGGGTGGAGATGCACGCCATCGGTGA
TAGCTTGAACGCCAGGTGGGTCAATTTCAAGTACGACGGTACTGCTGTAC
AAGCAGGATGTGGACTGCTCCAAAACATAGCTACACGCCGTATTCGTGTG
GTGGACAAAAAAATGTTGTAGGCAGAGGAGAGTCGTGGAGGGTCACGGAC
GACTTGCGGTAG
back to top

Coding sequence (CDS) from alignment at Scaffold_370:411206..413117-

>EsuBft1481_3a-0001 ID=EsuBft1481_3a-0001|Name=EsuBft1481_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=582bp|location=Sequence derived from alignment at Scaffold_370:411206..413117- (Ectocarpus subulatus male Bft15b)
ATGTCCTGTGACTTCGTGTCCACAAATGGCAGCGATGAGGCTGTTCTTGC
TGCATTGGCTTGTATCAATGGCTCAAGTGCTTGCGTCGTGTTGTTGCCGC
TTCAGAAAAAGTGCTCTGCACCGTTCGGCAAGGACAACCCGTGCCGGTCG
TGCCGAAAGAACGGGGTTGATTGCGTCTTCTCTGACCGGCAGAACCCGGG
GCCCAAGGCAAAAGGGGCAACAGGAGTGCCAAGCTTACCGGGAGAGATAT
CCGTCACCCAGGGCGGAAGCGCGGGTAGGACCGTCAAAGAATCTGCGAGG
GCAGCGTCGGGGCGCGCACGGCCGGCGAGCCGTCTAACGCGATCGTGTCG
CCACCATGCACGGCCCGCCTCTCGCGTGACCAACTGCTTGCCCACCAGGC
GACTGGCGGTCGATGCCAATAGCTCCGATGCCGCACAGACGTCGGTCGCT
GGGGCGACGGCCAACAACAGCGATCGCCAGAAGGAACTGCGGGTGGAGAT
GCACGCCATCGGTGATAGCTTGAACGCCAGGTGGGTCAATTTCAAAGGAG
AGTCGTGGAGGGTCACGGACGACTTGCGGTAG
back to top