EsuBft1481_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1481_2a-0001
Unique NameEsuBft1481_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_370contigScaffold_370:416306..417907 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1481_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length91
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1481_2aEsuBft1481_2aEctocarpus subulatus male Bft15bgeneScaffold_370 416306..417907 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1481_2a-0001-exonagat-exon-54408Ectocarpus subulatus male Bft15bexonScaffold_370 416306..416312 +
EsuBft1481_2a-0001-exonagat-exon-54407Ectocarpus subulatus male Bft15bexonScaffold_370 416843..416856 +
EsuBft1481_2a-0001-exonEsuBft1481_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_370 417016..417907 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1481_2a-0001-cdsEsuBft1481_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_370 416306..416312 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1481_2a-0001-exonagat-three_prime_utr-4239Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_370 417499..417907 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1481_2a-0001EsuBft1481_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_370 416306..417498 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1481_2a-0001 ID=EsuBft1481_2a-0001|Name=EsuBft1481_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=913bp|location=Sequence derived from alignment at Scaffold_370:416306..417907+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAGACCCGCAAGCACAGNCTCCGGGGTACCGCAACAAAGGAATACT
CCTCGATGTCACACACGCAGACCCGCAAGCACAGGTACACTTGCGGAACG
GCAGCGCGACCAGCGATGGAACCGTAGCTCAAGCATCCGAGGCGCGAAAG
CGTCAGCACTACGCTCGTCCGGGACACGTGTCCTTTGACGAACACAGCTT
TAAACTTACCACCTTAGCCGTGGAAAGCTTTGGCCGCCTTGGAGAGGAGG
GTTACGAGTTCATCGATGAACTTGCGACACATGCCGTGGGAGGAAGGGAC
GGAGGAACGATGGCTCTGAAAGGAGTCTTCAAGGAACGACTTCTTCAGAT
CGTTTCGGTGGCTACACAGGTGGCCATATCTCGGCGAGTGCAGAGGTACA
AGCTCGCATTGCGCGGGCGTCAAGACGCCGAAAACAGGCGAACAAGATCG
ACCTCGAACCAGTCAACGCCAATGATATGGGGATGGAGTGTAGACGCATC
GTAGAACGTGTTTTCGTTTGAAGTTGGCGTCTTGCTTGAGAGTAGATGGG
ACAGATTTGCGTAGAATAGGGTAAGATGTTTTCATGAACGGCGAAGAAAG
GGCTTTTCCAACACGGAGATGTAGCATGGATCGATACATTTGTTGGATTT
CAGCTTTAACAAGAGGACATCAACGCAGTAGTATTTTAGCAAGCTTACGA
ACGCATGTTAATGTAGGATACCATGAGGATTGTCATTGGTTTTATTTCAA
ATTGAAGAGGAGATATTCTTAGGATGTAAGTGACAGTAGAAAAAAGCCCT
ACATATGTTGTTGTACTTCGCATTGGTTTAATATTCATGTAGAGTATGAG
ACATTCAGTGAAAGTTTTCTGAGGTACATCTGCAATTGTCGGAAGGCAAA
CAAAATAATAATA
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protein sequence of EsuBft1481_2a-0001

>EsuBft1481_2 ID=EsuBft1481_2|Name=EsuBft1481_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=167bp
MQDPQAQXPGYRNKGILLDVTHADPQAQVHLRNGSATSDGTVAQASEARK
RQHYARPGHVSFDEHSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRD
GGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGRQDAENRRTRS
TSNQSTPMIWGWSVDAS
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mRNA from alignment at Scaffold_370:416306..417907+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1481_2a-0001 ID=EsuBft1481_2a-0001|Name=EsuBft1481_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1602bp|location=Sequence derived from alignment at Scaffold_370:416306..417907+ (Ectocarpus subulatus male Bft15b)
ATGCAAGGTTTGTCGTCTTGGTCGTCGCCGTCGTTGTTGATGTTGTCTTC
ACGAAAAAACAATCCGGTCTCCGCTCAGTACTTTCAAATATCCGCACTGG
TCCGCCTGACGGGGACGCCTTCCGTGTCAAAAGAAACAAGGAAAAACATA
CCAGTGGTCTAGTAAACGGATGAAATCAGGAAAACAGGCGACGGCAACGG
GAAGGCCACACACCGCCCCTTCCAACAAAGGGTGGAAGAATTCTGTGTCT
AGCCGTTGGAATGTTGAAAAAGTCCCTCTATCTCCGTAAGGCTTCCTTCG
TTGCGCGTAGAACACGGCCGCCAGTTCGATGAGAGCTTCTATTGGTTTTC
TGCAAGGAATGGGGGAGGCCAATCGGAGAAGGGGGCGGGGTCACAAAATG
GCGAGCGGGTCCAACGGGGTCGGTTGCTGCTGTCCATACCCAACAAGGGC
CACCATGTTTCACCATTCGTCCGGCTCTATCGCAGTCTAGGAGGACCACA
AAGCCCAGAAATTATCAACGCGATGTCACACACGCAGACCCGCAAGCACA
GGTACACTTGCGGAACGGCAGCGCGACCAGCGATGGAACCGTAGCTCAAG
CATCCGAGGCGCGAAAGCGTCAGCACTACGCTCGTCCGGGACACGTGTCC
TTTGACGAACACAGCTTTAAACTTACCACCTTAGCCGTGGAAAGCTTTGG
CCGCCTTTAGNCTCCGGGGTACCGCAACAAAGGAATACTCCTCGATGTCA
CACACGCAGACCCGCAAGCACAGGTACACTTGCGGAACGGCAGCGCGACC
AGCGATGGAACCGTAGCTCAAGCATCCGAGGCGCGAAAGCGTCAGCACTA
CGCTCGTCCGGGACACGTGTCCTTTGACGAACACAGCTTTAAACTTACCA
CCTTAGCCGTGGAAAGCTTTGGCCGCCTTGGAGAGGAGGGTTACGAGTTC
ATCGATGAACTTGCGACACATGCCGTGGGAGGAAGGGACGGAGGAACGAT
GGCTCTGAAAGGAGTCTTCAAGGAACGACTTCTTCAGATCGTTTCGGTGG
CTACACAGGTGGCCATATCTCGGCGAGTGCAGAGGTACAAGCTCGCATTG
CGCGGGCGTCAAGACGCCGAAAACAGGCGAACAAGATCGACCTCGAACCA
GTCAACGCCAATGATATGGGGATGGAGTGTAGACGCATCGTAGAACGTGT
TTTCGTTTGAAGTTGGCGTCTTGCTTGAGAGTAGATGGGACAGATTTGCG
TAGAATAGGGTAAGATGTTTTCATGAACGGCGAAGAAAGGGCTTTTCCAA
CACGGAGATGTAGCATGGATCGATACATTTGTTGGATTTCAGCTTTAACA
AGAGGACATCAACGCAGTAGTATTTTAGCAAGCTTACGAACGCATGTTAA
TGTAGGATACCATGAGGATTGTCATTGGTTTTATTTCAAATTGAAGAGGA
GATATTCTTAGGATGTAAGTGACAGTAGAAAAAAGCCCTACATATGTTGT
TGTACTTCGCATTGGTTTAATATTCATGTAGAGTATGAGACATTCAGTGA
AAGTTTTCTGAGGTACATCTGCAATTGTCGGAAGGCAAACAAAATAATAA
TA
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Coding sequence (CDS) from alignment at Scaffold_370:416306..417907+

>EsuBft1481_2a-0001 ID=EsuBft1481_2a-0001|Name=EsuBft1481_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=504bp|location=Sequence derived from alignment at Scaffold_370:416306..417907+ (Ectocarpus subulatus male Bft15b)
ATGCAAGACCCGCAAGCACAGNCTCCGGGGTACCGCAACAAAGGAATACT
CCTCGATGTCACACACGCAGACCCGCAAGCACAGGTACACTTGCGGAACG
GCAGCGCGACCAGCGATGGAACCGTAGCTCAAGCATCCGAGGCGCGAAAG
CGTCAGCACTACGCTCGTCCGGGACACGTGTCCTTTGACGAACACAGCTT
TAAACTTACCACCTTAGCCGTGGAAAGCTTTGGCCGCCTTGGAGAGGAGG
GTTACGAGTTCATCGATGAACTTGCGACACATGCCGTGGGAGGAAGGGAC
GGAGGAACGATGGCTCTGAAAGGAGTCTTCAAGGAACGACTTCTTCAGAT
CGTTTCGGTGGCTACACAGGTGGCCATATCTCGGCGAGTGCAGAGGTACA
AGCTCGCATTGCGCGGGCGTCAAGACGCCGAAAACAGGCGAACAAGATCG
ACCTCGAACCAGTCAACGCCAATGATATGGGGATGGAGTGTAGACGCATC
GTAG
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