EsuBft1476_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1476_8a-0001
Unique Name	EsuBft1476_8a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Properties


Property Name	Value
Seed ortholog	2880.D7G2D8
ProteomeId	EsuBft1476_8
Protein domains	TMhelix
Protein domains	SIGNAL_PEPTIDE_C_REGION
Protein domains	SignalP-TM
Protein domains	SignalP-noTM
Protein domains	Coil
Protein domains	SIGNAL_PEPTIDE
Protein domains	G3DSA
Protein domains	IPR002661
Protein domains	IPR023584
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	SIGNAL_PEPTIDE_H_REGION
Protein domains	SIGNAL_PEPTIDE_N_REGION
Owner	apollo_admin@sb-roscoff.fr
Note	ribosome-recycling factor os:cyanothece (strain atcc 51142) gn:frr pe:3 sv:1 [Automatic annotation]
Nb exon	8
Max annot lvl	2759\|Eukaryota
Length	1727
Hectar predicted targeting category	signal peptide
Evalue	8.01e-155
EggNOG OGs	COG0233@1\|root,KOG4759@2759\|Eukaryota
Ec32 ortholog description	ribosome recycling factor
Ec32 ortholog	Ec-00_005780.1
Date last modified	2016-06-13
Date creation	2016-06-13
Preferred name	RRF1
KEGG rclass	RC00002,RC00078,RC02809,RC02889
KEGG ko	ko:K02838,ko:K03283,ko:K13811
KEGG TC	1.A.33.1
KEGG Reaction	R00509,R00529,R04928,R04929
KEGG Pathway	ko00230,ko00261,ko00450,ko00920,ko01100,ko01120,ko01130,ko03040,ko04010,ko04141,ko04144,ko04213,ko04612,ko04915,ko05134,ko05145,ko05162,ko05164,ko05169,map00230,map00261,map00450,map00920,map01100,map01120,map01130,map03040,map04010,map04141,map04144,map04213,map04612,map04915,map05134,map05145,map05162,map05164,map05169
KEGG Module	M00176,M00353,M00355
GOs	GO:0000003,GO:0002181,GO:0002184,GO:0002376,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003747,GO:0005488,GO:0005507,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0006996,GO:0007275,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009579,GO:0009605,GO:0009607,GO:0009617,GO:0009620,GO:0009657,GO:0009658,GO:0009790,GO:0009791,GO:0009793,GO:0009814,GO:0009817,GO:0009987,GO:0010154,GO:0010467,GO:0016043,GO:0019538,GO:0022411,GO:0022414,GO:0032501,GO:0032502,GO:0032543,GO:0032544,GO:0032790,GO:0032984,GO:0032988,GO:0034641,GO:0034645,GO:0042742,GO:0043021,GO:0043023,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045087,GO:0046872,GO:0046914,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050832,GO:0050896,GO:0051704,GO:0051707,GO:0061458,GO:0070126,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:0098542,GO:0140053,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903008
EC	2.7.1.25,2.7.7.4
Description	ribosomal large subunit binding
COG category	J
BRITE	ko00000,ko00001,ko00002,ko01000,ko01009,ko03009,ko03012,ko03029,ko03041,ko03051,ko03110,ko04131,ko04147,ko04516

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_54:70623..76066-
coding sequence from alignment at Scaffold_54:70623..76066-

spliced messenger RNA

>EsuBft1476_8a-0001 ID=EsuBft1476_8a-0001|Name=EsuBft1476_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1727bp|location=Sequence derived from alignment at Scaffold_54:70623..76066- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AGTCAACAGAGCTCACATCAAGAGAAAGAGAGAGAGAGAGAGAGAGACCA
TGAGGGCTTCTGTATTCACGGCTGCGGCTTCCGCGGCGGCGGTAGCCTTG
TGTTCCGGAGTGTCGGGGTTTGTCTTCGCACCGCCTCTGCCTGCAAAGCG
AGCTGGCGCACCGACGACGGGCAAAGCATCGGCGTGCGCATCCACGGCTC
CTCGCCTGAGATGGTCGTCGTCCTTGAAAATGGCTGCAGACGAATTCGAC
GGGGATGCGGTCCTGGCTTCGGCTCAGGAACGGATGGACAAATCGGTGGA
GAGCGTGCGGCTTAACCTCGAGACCCTCCGAACCGGGCGGGCAAACCCCA
AGATACTGGACCGCGTTGTGGTGGAGTGTTATGGGGCGGAGACGCCGCTC
AACCAGGTGGCCTCCGTGAAGACCACCAGCGCCACCGCGCTCTTGGTGGA
GTCATACGATCCGACTATCCTGGCCGACATCGCCGCCGCCATCCAAGAGG
CGGACTTGGGCCTTACTCCGAACAACGACGGCACCGTGATCCGGTTGAAC
ATGCCGCCCGTGACGGAGGACCGCAGAAAGGAACTCGCGAAGGAGGCCAA
GAGCCTTGGGGAAGAGGGTAAGGTTGCGATTCGTAACATCAGGCGGGAGG
CTGTGGACACGGTGAAGAAGGCCGAAAAGGCCAAGAACTTGGGCAAGGAC
CAGTCTAAGGATGTACAAGACGCGATCCAAAAGCTCACCGACAAGACTAC
GAAGACCATAGACGAGAAGGTTGCCGCCAAGGAGAAGGACATCCTCAAAG
TGTAAACGTATCCACATCTACGTTATGTACGAGCTCTACGAAAGCAAGTG
TAGAGACCGTCTGTCCCTAGATAGTCTACGATAGAGAAGTTGAGTACTTC
ATACTAGCGCGTACCGCCGCGCCATGGGCGATTTGTTGTGGTCTTCTTAT
TCATCTACAATTTGCCGCAGCTGGGCTCGAACCCACCCATTTCGGGGATG
CCCACGGTAAAAACAATGGTGGCTGACGAGGTCGGTGCGGCGTGGGCGAA
AATGTCTTGGTACGTTCGGGAATGGCAAGAAAATTTACTTTCTAAAAATA
GTGTTCCCGTGGGCGGACGACCACTCTTGAGTTCTACGAGGAGGATCCAA
GAAGGAACATCCAACCAAGCGAGGGACGGTTTCCCTCCCTACTGTTGCTG
AGCGGATGCATCGAAAGTGCAGGCTTTTTGCCCTGCGACGGGTAACATTC
ATTTGCGAAGTATTCGCGGGAGGTTGACAGCAGTTGCACGATCAATATGC
ACTAACACACACGCCACGTAGTATTTTTTTCCTTTCCACTGGCTTTGATT
TGCATGCGTGGTTTTATCGCTACCTGTAAACGGGTTCAGCATCCCCTTCC
TCGTCGTTATATAATGTGACCAATATGGATGCAAGCGGTTCGAGTAAGTG
TAGAGAGGAACACACGAACACACTCACCTTGCTGTTCACAACGGTGTTGA
TTGACATTTCTTCTTCTAACGGGTATTATTGCAATAAATTCATTGATTCC
AGCAACGTATTATCTCGTGTGCCAAGCAATGTAGATGGTAGACCCGTAGC
TAGCTGTAGAACTGTACTTACAGGTTCGGTTCGAAACCTCGTTTTTTGCT
GACAAATGACACAATCAGTTAACAGAGCTTCTCGGCCGGAATTTGTTCGT
TGTTCGTTTCACAGGCAGCAGGTACGG

protein sequence of EsuBft1476_8a-0001

>EsuBft1476_8 ID=EsuBft1476_8|Name=EsuBft1476_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=251bp
MRASVFTAAASAAAVALCSGVSGFVFAPPLPAKRAGAPTTGKASACASTA
PRLRWSSSLKMAADEFDGDAVLASAQERMDKSVESVRLNLETLRTGRANP
KILDRVVVECYGAETPLNQVASVKTTSATALLVESYDPTILADIAAAIQE
ADLGLTPNNDGTVIRLNMPPVTEDRRKELAKEAKSLGEEGKVAIRNIRRE
AVDTVKKAEKAKNLGKDQSKDVQDAIQKLTDKTTKTIDEKVAAKEKDILK
V

mRNA from alignment at Scaffold_54:70623..76066-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1476_8a-0001 ID=EsuBft1476_8a-0001|Name=EsuBft1476_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5444bp|location=Sequence derived from alignment at Scaffold_54:70623..76066- (Ectocarpus subulatus male Bft15b)
AGTCAACAGAGCTCACATCAAGAGAAAGAGAGAGAGAGAGAGAGAGACCA
TGAGGGCTTCTGTATTCACGGCTGCGGCTTCCGCGGCGGCGGTAGCCTTG
TGTTCCGGAGTGTCGGGGTTTGTCTTCGCACCGCCTCTGCCTGCAAAGGT
AAGCAGCGAAATTGAACATGACAGCAGTTGTAATCCGCATGCTGCTGCAC
CTGTCCACGAAGGGTGCCCCACCAAAAGGAAGCCCTCCTGCTGTTCCCTC
CTTACTGCTGTGCGCGGTTGGTTTGGTATGGGTAGCAAGGTAGTGTGGAG
CTAGGAGGTCTTGGCGTTGTTGATGGTATGCGTCTTTTTGATCATGATGA
TGCCATCGGAGTGAGGGCACTTGTTTAGCATACACATGCGTGCTGCGTTG
GATGTATCGATCGTCGATCGTCGTTGACGACTCACCGCGGTTGATGTGTC
ACACCGCCCTTGCGGGTCCACTGGGACGTTGTGCATCTTAGGCACACGTA
GAAGCAGCAGAAGGTGTAGGCAGGTGGTGTTGAGACTCACAAACCTGCTC
TGTTGTTGCGATTCTGTGCTGGCGGGCAACCACCATGAAGGACTGCGAGC
ACTCGCGAGGGCTGGGCTCAGCACCCCGTGTTGAGCTGCCTACTTGTACA
ACTAAGCAGGCCAGCGGCGGCGGAGGGGCCGAGAAGAGTGTACCACGCGC
TCGGCACGAAGGTTCACCACCTCATGCAACCGCTCCCACGAATCTCGAAT
GCTGAATGAAACAAAGCAGGACCAAACTTTGACATTTCCATTCACTCTTC
CGGCCGTCTGCCTGAATCCTTAAACGTCAAACAGCGAGCTGGCGCACCGA
CGACGGGCAAAGCATCGGCGTGCGCATCCACGGCTCCTCGCCTGAGATGG
TCGTCGTCCTTGAAAATGGTGAGCAAGGCAACCCTGACCCTTGCTCCGAC
TGCCCGGCTTGTTTTTGACGATAGTATTCGCAAACGATAGGGAGGTACGA
TACTCCTAAGTAAACCTTACGCTGTACTGCTGCGCGTGTTTGACTAAGCA
CCATGGTCAACGAGCGGCATCATGCTGTCCCTGCTACGCCCGGTAGGTTG
CTCGGCACTTTTGTGATCACAAACCTTCGCATCATTTCCGCCTGAAGGAA
CGCGCTCGCGACGCGGATAGTTTCACGCTGGCGGTACCCTATCCGCCCCA
CGAGAAAGTTGGAAGTTTCCGTGGGAAACCTCGATTGTTGCGGTTATTTG
GGGGACGTTCATGGGCGGACCCGATCGATCGCCTACGCCCACCGCTGCTA
GAAGTACATTCCGAGTGTCGAGAAGGGGGTGTGCCGTTCGTATCTGCTAC
GGCATTCACAGATGTCACAGAGGCCGCAACGACCGAACACGTGCGCACAA
TGACGCTGTCGGTGTTCTTTCCCCTCTCGTTCTACCGATCGATCGGCTAC
GCCCACCGCTGCTACAGCAGTGCATACATGACGTGTCGAATTTCGACAAG
GGTGTGTGTTCGTAACTGCTGTGGCATTCACAGATGTCACACGGGCCGCA
ACGACTGAACACGTGCACTACTGCTACAGCAGTGCATACGTTTCAAATTT
CGAGAGGGTGTGTTCATAACTGCTGTGGCATTCACAGATGTCACTTGGGC
CGCAACGACCGAACACTTGCGCACAATGGTGATGTCGGTGTTCTTTCCCC
TCTGGTTCTAACCGGTCATTGCCTAGAAACAACAGGATCATGGACCATCC
AATAAGAGTGGGAGCGATGACTTGGTTTGTTCCTTCTTTTCTTCTTTGCG
CGTGCGGTTAACTGCTGTCCGCCTGTCTACAGGCTGCAGACGAATTCGAC
GGGGATGCGGTCCTGGCTTCGGCTCAGGAACGGATGGACAAATCGGTGGA
GAGCGTGCGGCTTAACCTCGAGACCCTCCGAACCGGGCGGGCAAAGTGAG
TGATGCGCCGCGGCAATCAATACCTCAACCAACACAGCAGCTACGGTTCA
GGAGCGAGCGACCAATAGAGACATTTTCGTTTTATCCAAGATGGAAGAAA
CGGGACGATTGATCACGTTGCGGGATGATTTTTGTACAATGTACGTTTTG
GACGCGTAAGGTATTCCCTTCATGATGGTGGCGATCAAATCGATTAGCAT
GTGGAGCCTCAACAGCATAACCATTCGCCTGGCCGATTGCCTAGCCTGTA
GCAAGAGTGATACGAATTGTCGTCCGTTGGGGCCGCAGTTCTCCCGATGT
CATTGTAGACTTATCCATCAAATTTTCTGTGACAAGGTCCAAGGGTCGGC
TGGGCGCTGTATTTAAGTGAAGACAAAAAAAAAATGGTCTTTGGTCCTTG
CGCCGTTGGTTTCAATTGCTCATTCCTGGCGCCCTTGGCATCACTTGAGA
TCTTGGCGCCCGTGGTTTCACCTTGCTCTCTTGTTGCCTTCCTCAGCCCC
AAGATACTGGACCGCGTTGTGGTGGAGTGTTATGGGGCGGAGACGCCGCT
CAACCAGGTGGCCTCCGTGAAGACCACCAGGTGATTATTTTTTTCTAATT
TGGTAAATTGCTTGTTTTGTGAGAATTACTTGCTGCCTTGTGGGTAACAT
TGTCTAGGAAGTAGCAGCCTCGTAACAGGAAAAGAAGCCAGGCGTGCGCT
GGCCCAGCATCCACAATGATCGATGCAACACGTCACGGCGGGACAACGTC
TGAAGGAGAGAGAATGCTCTACCGCCGACTCTCCTCGTTCGCCTGGAACG
TGCTGATTGAGGTCTCGCTATTCCTTGTTTTGGGGTCACCATGTACATGT
TGTTGTCCGCTACTCGTCGGCCGCATCGAGAAGCGGTAGGCTCTGGGAAC
CGCACCGACCAAGAGAGACGTATCCTTCAATGACTGTTTTTTTACAGTTT
ATCGCCATCCCCTCTCCCTGTCCGTCCCCTTTCTCTATCCCGCCTTGTCC
TGGGTGCCGTTTTTGGTTGTTGGTTATTGTGGTGTGTTTCCCTCAGCGCC
ACCGCGCTCTTGGTGGAGTCATACGATCCGACTATCCTGGCCGACATCGC
CGCCGCCATCCAAGAGGCGGACTTGGGCCTTACTCCGAACAACGACGGCA
CGTAAGGGAAAAGACGCATGGTGACAAGTATGTTCGTTCTTTTTGTTCGC
TTGGACGCCGACTGTGTGCCCTACGAGTCTGCAGTCGGTGCGGTGTGTTG
GTTCTTGGTTGCTGAAATGTTTTGATGATTTTTTTGTTCGCTCCGGACGA
CGAGCGCACCCCAACACGCCTCTTCAATGGCCCCTTTGCGTGCTTTTGGT
TCCGTTTGCCCCGTCGACCAGGGTCTAGTGGTCTCTCAGTAGTGCTAGGT
GGTCTCTTAGTAATGCTAGGAGGACTCCTTTACTCTCCACGTCATAGTCC
TCACAGCCTTAACTTCGCCCCCCGAAAGGAAGAGGCTGTGCCCCTCCATT
TCGCTGATTGAATTTCCCATCGATTTTCATTTTTTCGAGGTATTTCTTCC
GCCCCCCACACCGTCCTGGTGTTGTAGGGATGCGAGGTCCTTGAAATACC
GACTACGGCATACGTTTACGTGACTACACCCCACCCCGTGTGTACCTCCC
CGTGGCGCCGAAACAGCGTGATCCGGTTGAACATGCCGCCCGTGACGGAG
GACCGCAGAAAGGAACTCGCGAAGGAGGCCAAGAGCCTTGGGGAAGAGGG
TAAGGTAGGAAATCAGCAGTTACTGGTACTCTTGAACCTCTATCCCGCTT
TATGCCATGCAAGAGTCTTGGAGGAGGGGGAAGGTAGGTCAGCATGTAAG
TTGCCCGCTGTGATCTGTGCTGGTACTCTTGAAAATGTAATCCTCTTCTT
CATGGCCATGGGGCTTGGATTTCGAGGGTTTTGTTGCCCGCATCACGTAG
CACGTGTTCGCTTTATCTGTGTGGACGAGGCTCATCCGTACGCTAGCTTG
GCTTTAATTGCACCCCCGGGGATTACGATCGCTATTGGAGCTTCCAATGT
GGGAGGGTGAATGCTGCAGGTAGTCAAGACAGAGTTGGAAACGAGTTTTT
GATTCCGCGTGGTTTCTGAGGTGTTCACGAGCGCGCTTCTTCGTTTGTTT
TTTCGTTCACAGGTTGCGATTCGTAACATCAGGCGGGAGGCTGTGGACAC
GGTGAAGAAGGCCGAAAAGGCCAAGAACTTGGGCAAGGACCAGGTAGCTT
GACTACTGGTACCATGCTATTGGGAAGTTGGGGTTGACCTTCGGCAGTGT
TTGGTGCATGGACGCTCGTTTTTGTTTTGCGTTTTTCTTCGTCGTCCGGC
GGACTGAATGCATCCCCAAGACTAAAGCAAGCGTATACGTTAACATACCT
CCCCGTCCTTGCTCGCCTTCGATCCCTTGGTTGTTCTTCTGGCTTCCGGC
GGGATGAAAAACGAGCGCAGTCTAAGGATGTACAAGACGCGATCCAAAAG
CTCACCGACAAGACTACGAAGACCATAGACGAGAAGGTTGCCGCCAAGGA
GAAGGACATCCTCAAAGTGTAAACGTATCCACATCTACGTTATGTACGAG
CTCTACGAAAGCAAGTGTAGAGACCGTCTGTCCCTAGATAGTCTACGATA
GAGAAGTTGAGTACTTCATACTAGCGCGTACCGCCGCGCCATGGGCGATT
TGTTGTGGTCTTCTTATTCATCTACAATTTGCCGCAGCTGGGCTCGAACC
CACCCATTTCGGGGATGCCCACGGTAAAAACAATGGTGGCTGACGAGGTC
GGTGCGGCGTGGGCGAAAATGTCTTGGTACGTTCGGGAATGGCAAGAAAA
TTTACTTTCTAAAAATAGTGTTCCCGTGGGCGGACGACCACTCTTGAGTT
CTACGAGGAGGATCCAAGAAGGAACATCCAACCAAGCGAGGGACGGTTTC
CCTCCCTACTGTTGCTGAGCGGATGCATCGAAAGTGCAGGCTTTTTGCCC
TGCGACGGGTAACATTCATTTGCGAAGTATTCGCGGGAGGTTGACAGCAG
TTGCACGATCAATATGCACTAACACACACGCCACGTAGTATTTTTTTCCT
TTCCACTGGCTTTGATTTGCATGCGTGGTTTTATCGCTACCTGTAAACGG
GTTCAGCATCCCCTTCCTCGTCGTTATATAATGTGACCAATATGGATGCA
AGCGGTTCGAGTAAGTGTAGAGAGGAACACACGAACACACTCACCTTGCT
GTTCACAACGGTGTTGATTGACATTTCTTCTTCTAACGGGTATTATTGCA
ATAAATTCATTGATTCCAGCAACGTATTATCTCGTGTGCCAAGCAATGTA
GATGGTAGACCCGTAGCTAGCTGTAGAACTGTACTTACAGGTTCGGTTCG
AAACCTCGTTTTTTGCTGACAAATGACACAATCAGTTAACAGAGCTTCTC
GGCCGGAATTTGTTCGTTGTTCGTTTCACAGGCAGCAGGTACGG

Coding sequence (CDS) from alignment at Scaffold_54:70623..76066-

>EsuBft1476_8a-0001 ID=EsuBft1476_8a-0001|Name=EsuBft1476_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=756bp|location=Sequence derived from alignment at Scaffold_54:70623..76066- (Ectocarpus subulatus male Bft15b)
ATGAGGGCTTCTGTATTCACGGCTGCGGCTTCCGCGGCGGCGGTAGCCTT
GTGTTCCGGAGTGTCGGGGTTTGTCTTCGCACCGCCTCTGCCTGCAAAGC
GAGCTGGCGCACCGACGACGGGCAAAGCATCGGCGTGCGCATCCACGGCT
CCTCGCCTGAGATGGTCGTCGTCCTTGAAAATGGCTGCAGACGAATTCGA
CGGGGATGCGGTCCTGGCTTCGGCTCAGGAACGGATGGACAAATCGGTGG
AGAGCGTGCGGCTTAACCTCGAGACCCTCCGAACCGGGCGGGCAAACCCC
AAGATACTGGACCGCGTTGTGGTGGAGTGTTATGGGGCGGAGACGCCGCT
CAACCAGGTGGCCTCCGTGAAGACCACCAGCGCCACCGCGCTCTTGGTGG
AGTCATACGATCCGACTATCCTGGCCGACATCGCCGCCGCCATCCAAGAG
GCGGACTTGGGCCTTACTCCGAACAACGACGGCACCGTGATCCGGTTGAA
CATGCCGCCCGTGACGGAGGACCGCAGAAAGGAACTCGCGAAGGAGGCCA
AGAGCCTTGGGGAAGAGGGTAAGGTTGCGATTCGTAACATCAGGCGGGAG
GCTGTGGACACGGTGAAGAAGGCCGAAAAGGCCAAGAACTTGGGCAAGGA
CCAGTCTAAGGATGTACAAGACGCGATCCAAAAGCTCACCGACAAGACTA
CGAAGACCATAGACGAGAAGGTTGCCGCCAAGGAGAAGGACATCCTCAAA
GTGTAA