EsuBft1476_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1476_5a-0001
Unique NameEsuBft1476_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_54contigScaffold_54:88241..92842 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G2E0
ProteomeIdEsuBft1476_5
Protein domainsIPR029063
Protein domainsPF13489
Protein domainsIPR026113
Ownerapollo_admin@sb-roscoff.fr
Notemethyltransferase-like protein 6 os:mus musculus gn:mettl6 pe:2 sv:2 [Automatic annotation]
Nb exon6
Max annot lvl2759|Eukaryota
Length1602
Hectar predicted targeting categorymitochondrion
Evalue1.36e-214
EggNOG OGsKOG2361@1|root,KOG2361@2759|Eukaryota
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-00_005800.1
Date last modified2016-06-13
Date creation2016-06-13
KEGG rclassRC00003,RC00113,RC00392,RC01244
KEGG koko:K00599
KEGG ReactionR02671,R02912,R03955,R04939
DescriptiontRNA (cytosine) methyltransferase activity
COG categoryS
BRITEko00000,ko01000
Cross References
External references for this mRNA
DatabaseAccession
GO0016427
GO0008276
GO0008170
EC2.1.1
GO0008171
GO0008649
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1476_5aEsuBft1476_5aEctocarpus subulatus male Bft15bgeneScaffold_54 88241..92842 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1476_5a-0001EsuBft1476_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_54 88769..92842 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1476_5a-0001-exonagat-exon-62637Ectocarpus subulatus male Bft15bexonScaffold_54 88241..89071 -
EsuBft1476_5a-0001-exonagat-exon-62634Ectocarpus subulatus male Bft15bexonScaffold_54 89587..89653 -
EsuBft1476_5a-0001-exonagat-exon-62635Ectocarpus subulatus male Bft15bexonScaffold_54 90355..90555 -
EsuBft1476_5a-0001-exonagat-exon-62633Ectocarpus subulatus male Bft15bexonScaffold_54 91328..91557 -
EsuBft1476_5a-0001-exonEsuBft1476_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_54 92241..92299 -
EsuBft1476_5a-0001-exonagat-exon-62636Ectocarpus subulatus male Bft15bexonScaffold_54 92629..92842 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1476_5a-0001-exonagat-three_prime_utr-4178Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_54 88241..88768 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1476_5a-0001-cdsEsuBft1476_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_54 88769..89071 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1476_5a-0001 ID=EsuBft1476_5a-0001|Name=EsuBft1476_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1602bp|location=Sequence derived from alignment at Scaffold_54:88241..92842- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACATGTTGGGTTAGCCCAATTGTCGCTACGAGGCGACGGTTTCACTT
TTTGTTCCCCTCTGTTCTGCAGGAAAAAGAGGCGCTTCAATCTGTCAAGG
GTAAGGGGCCACCTCTGTCCAAGTTCTGGAGAGACAAGTACGAGAGAGAG
GCGAGGAAGAGCTGGGACTTGTTCTACGGCCGTAACGCCGGGAATTTCTT
CAAGGACCGACACTATCTAGGAACGGTATTTCCGGAGCTGACTGAAACCG
GCGCCGACTTGGAGTTGTCACAAAGGCTCGAAAAATCGGAAGTATATCGC
AACGGCGACGGCGGTGAGACCGTTACCGAGAACGGTACTCGGAGAAAGGC
TCGTCGGCTGGGCAGAAGGACTCTGTTGGAGCTCGGTTGCGGCGTGGGCA
ACGCGGTATTTCCTCTCCTTGAAGAGAACCGTGGGCTCTTCGTCATCGCG
GCAGACCTGTCCCCTAGAGGGATCGGGGTGCTCAAGCAGCACCCCAAGTA
CAGCTGCGGACGGTGCGAGGCCTTAGTGCTAGACGCTACCGCCGACGACC
TCCCCCCCGGTGTGTTGGAAGACGGAGGCGTGGACTTGGTCCTGCTGCAG
TTCAGCCTGTCGGCCGTAGCTCCCAAAGACATGGCGACGGTGGCCAGGCT
CGTCGAGACGGCGCTCAAGCCCGGGGGCAAGCTGCTTGTGCGGGACTACG
GCAGGCACGATGAAGCGCAGCTAAGGTTTGCGAAAGGGCGGCGATTGGGC
GACAACTTCTACGTCCGACAGGACGGTACGACGAGCTACTTTTTTTCCCT
GGAAGACCTGAGGCAGCTCTTCTGCGGCAGTTCTCCTGGCGGTTCGGGAC
TTCGAGATAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACT
TGTTCCGGCCAGAGCAACCGCGGGTGGTTTGACGGGGGGGCAAGCCTGGT
CGAAGAGGAGCTGTCGTTCGTGAGGAGGCAGTACGCGAACAGGGCGCAGA
AGGTGGCGCGGAGGAGAGTGTGGGTACACGGAAAATTCCGAAAACCGATG
CACTCGATGGCGGCACCGGTGTAGAAACTGTATACAAATGTTTGAGCAGG
TGTTTTCCCGAGTGTTGTCTCGTAGGGATGGACCAGTTTTTTTCAGGACT
GATACGTTGTCGTCGACAGCTGACGCTGCTGTACTTTTTTTTTCGTTTTC
ATTTTTCGTCGTCTCATTTATCCCATGCTCTTGGAACGTGCCCGTCGTGT
CGTGTAAATCGCCTGGGGTCTCGCCCTCGCCTAGACCATGCAAATCTTCA
TCTTGGTGCCATTTTTGTCACCGAAGTGGACAAAATCCGCCTGTCTGTCG
AGAAAATGGTCGGTTGCTTAACCCTCCGTCGTCTTTACTTCTGTTCCATG
CAGCAGTCAACCTTGCCTGGTGATTTGTTCTCCGTGAGGCAGGGCAAGCC
TCGGCAACGCGCGTCTTTCCCGTAGGACTTTTACCGCAAGGATGTGCGGA
ACAAGCCGCCGGGGCTTTATTGTGCGGTACAGCAAAGTAGTAGTGGAACG
TGATCTTATGTATGTTGAGCGTGTTGCTCTCGCTTCTGGGCGGCAGCCAG
GC
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protein sequence of EsuBft1476_5a-0001

>EsuBft1476_5 ID=EsuBft1476_5|Name=EsuBft1476_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=357bp
MTCWVSPIVATRRRFHFLFPSVLQEKEALQSVKGKGPPLSKFWRDKYERE
ARKSWDLFYGRNAGNFFKDRHYLGTVFPELTETGADLELSQRLEKSEVYR
NGDGGETVTENGTRRKARRLGRRTLLELGCGVGNAVFPLLEENRGLFVIA
ADLSPRGIGVLKQHPKYSCGRCEALVLDATADDLPPGVLEDGGVDLVLLQ
FSLSAVAPKDMATVARLVETALKPGGKLLVRDYGRHDEAQLRFAKGRRLG
DNFYVRQDGTTSYFFSLEDLRQLFCGSSPGGSGLRDSSSSSSSSSSSSST
CSGQSNRGWFDGGASLVEEELSFVRRQYANRAQKVARRRVWVHGKFRKPM
HSMAAPV
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mRNA from alignment at Scaffold_54:88241..92842-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1476_5a-0001 ID=EsuBft1476_5a-0001|Name=EsuBft1476_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4602bp|location=Sequence derived from alignment at Scaffold_54:88241..92842- (Ectocarpus subulatus male Bft15b)
ATGACATGTTGGGTTAGCCCAATTGTCGCTACGAGGCGACGGTTTCACTT
TTTGTTCCCCTCTGTTCTGCAGGAAAAAGAGGCGCTTCAATCTGTCAAGG
GTAAGGGGCCACCTCTGTCCAAGTTCTGGAGAGACAAGTACGAGAGAGAG
GCGAGGAAGAGCTGGGACTTGTTCTACGGCCGTAACGCCGGGAATTTCTT
CAAGGACCGACACTGTGAGATAGTAAGAAATTTCAGTCGCACCGTTCTCA
CGAACACTTCTCGGTGTACCCTAGCGAACTCCTGGTAGCTTTTCTACCTG
GTAGAGCTTAGCCAAAAGCGTACCGTTTGCCACTGCTCAATCAATTGTCA
TGACTAACAAACACCCGAGCATCAGACCCCCCCCCTCCTCCGCATGGGCG
GCGATTGTATGAAAGCTCGTTCGTTTCTCTTTTTGTTGTCGGTGCCATCC
GCCCATCCGCCTCTCTTTTCCCCTTGTTTTTTTTTCCGGCCTCACCGATT
TGGTGATGATGGGTGTGGGATGTGGACGGCAACGCTCGAGAAGATCTAGG
AACGGTATTTCCGGAGCTGACTGAAACCGGCGCCGACTTGGAGTTGTCAC
AAGTGAGAAGTATTGGTCGTGTTTTCGGTTGTCGTTGTGGTCGTTGTGGT
CGTTGTTGTTGTTGGTGGTGGTGGCGGTGGTGGTGGTGTTGTTGTTGTTG
GTGGCGGTGGTGGCGCTGGTGATGTTGTTGTTAGTAATAGTGGCGGTGGT
GGCGCTGGTGATGTTGTTGTTAGTAATGGTGGTGGCGGAGGGGATGGTGA
TGGTGAAGGTGGTGCTGGTAATGGTGGTGGTGGTGATGGCGTGGTTGTGT
AGTGGTGTTGTATTTGTATTGTTGGTGGCGATAGTGTTGTAGTTACTGCA
CGAAGAAACGTGCATTTAGAGTTTCGTTCCTCTCTCTGGGGGAGGGATCA
GTAACCGCAGCAGTGAATAGAAAGCGTTTTCCACCGTTGCAGTTGTCGGA
TGCCTTTCGCGCTAGTGCCCTTCCCCCTCTTGGAGATAGTCTCTGCAAAA
GACGTTTCTGGGAGCGCCCTGCTTGTCGCATTGAGCTATCTCTGGCTCTG
GCCTTAACATCAAACCGTACCACCCCCATCTTCACTATCGGCTCTATGAG
GTAATATCTGTGTTCAACTTCACATTTATTTGTTCGTGTGATGAAGAACA
TCACGGAGACTCGAAAGAATGGAGGAAATTCATCCATATGCGCAATCGCG
CACTTGATTTTCATGTGTGGTGGACAAATCCACAGAGGCTCGAAAAATCG
GAAGTATATCGCAACGGCGACGGCGGTGAGACCGTTACCGAGAACGGTAC
TCGGAGAAAGGCTCGTCGGCTGGGCAGAAGGACTCTGTTGGAGCTCGGTT
GCGGCGTGGGCAACGCGGTATTTCCTCTCCTTGAAGAGAACCGTGGGCTC
TTCGTCATCGCGGCAGACCTGTCCCCTAGAGGGATCGGGGTGCTCAAGCA
GCACCCCAAGTACAGGTGAGAGAGGTAGAGAGAGAGAGAGGAGAGAGAGA
GAGAGAGAGGGTGTGCTTTCAGTGCTAGCAGGCGGGTGGCTGGGAGGAAC
GTGTCATGATACGGTGTGGTTTTCCCTTCCGAAGACGGCAACGTGAGTCA
CCATGAGCTACACCATGGAATACAGCACTTTCGGAGTTGTTCTCCTCTGT
TGTTTTGCGCGTTCGTTTCGGCTGCGGGCGGTGCGAAGCGTCTGTGGTAG
TGCCGGACCCCTTTCTTCCCCCCCTACCCCTGAGCGTTAAAGTTGAAGAA
TCACCGCAACAATTTTTGCATCGTTGTGTTGTTGTTGCTGTTGTTGTTGT
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTCG
TTGTTGTCGTTGTTGTCGCTATCGTCGTCGTCGTCGTCGTTGCTATAGAG
ATTTGGGGAGCGTCGGCCCATTGTGTTTGTGTTTGCACACGGCAGGATAT
ATCCGAGGTCTCCGGGGGGATACGCAGATAGATACATGATGGTTGTGATA
GACTTGACGCGCTAGACTCTACGTGCCTGCCCATGTCTCTCCCTCTAAAT
AATCGAAGAACTTGAGTATCCTTTGTGCAAAACGCTGTCGACAGGAGCCC
CCAAGCGTGATAACATAGTACACGCGCTGACACCACAAACGCATTGCGCC
TCTGGTAAGCGTCCGCAAGCAACACCATCACACCGTAATCCTCTCTCGTT
CGTTTCCTCCTCGCCCCGCCATTGCTGCATCCCCCAGCTGCGGACGGTGC
GAGGCCTTAGTGCTAGACGCTACCGCCGACGACCTCCCCCCCGGTGTGTT
GGAAGACGGAGGCGTGGACTTGGTCCTGCTGCAGTTCAGCCTGTCGGCCG
TAGCTCCCAAAGACATGGCGACGGTGGCCAGGCTCGTCGAGACGGCGCTC
AAGCCCGGGGGCAAGCTGCTTGTGCGGGACTACGGCAGGTGAGCACCGAT
GCACTCCTCACGTACTTATTATTTTCTTTTGCCAGAGTTTGTTCTCTCTT
TGTCGAAGTGAAATGTTTGGTGATGCGCGTGGATCGCTCGCCTCAGTTTG
TCTCAAGAGATATCCACATGACGCACCCGGCGAGCTTGCGCTTGCGAATT
TTTGTTGAAGGAGCGTGTTGAAAGGTACATCAACCAAGCGCATCGATGAT
ATTGGAAAAAACGTTGAGGGTGAGTTTACATTCCCATCATGCCTGTCGCC
CCGGTTGTGTAGTTGGTGTTGTCGAAACCCTTCTACAGTAGTGGTCAGGG
TCAGGTCAGAGGTTCGGTCCCGGCGTAAGCAGCGTTTCTTGCAAAGTGAG
TTTTTTCCCTCGCTTCCGTTCCTGGGCCTGGGTGGAAAGCGCTAGTTCGT
ATGCACACAGAGGGAAAGAGAGTGTTGCACTCTTCTCGCATTAATTTTCG
AAGGCGAAGGGAGAGGAACCCTTCGGTGTGACCACGGGTTGGAGTAAACG
GCACAAATGCTGTGAGCGCTGATTTGAAGTGAAGACAAACAAACAACAAC
ATCATCATGCTCAACTGCCAGAACAAAACAATCCCGCCCTTGCGTTGCTT
CTTCTGGTGTAGAGCTCGGTATTGTGTATTGTTTGTAGGAAACGGCTGAA
GTACTGCCCCCGGCGCGCTGTGCCCCCCCCTCGCTTCAGGCACGATGAAG
CGCAGCTAAGGTTTGCGAAAGGGCGGCGATTGGGCGACAACTTCTACGTC
CGACAGGTGACCCTCCTTCTTACGCCTAAAGTCATACCATCATACTTTGA
TACGGTCGGACCGTAACGGACCTTCCAGTCCTTAGGACTTTCAACCCAGC
ATCCCCTACCCAAGCCACCCACCACTTGCATGCCTATGTCTTCGGGACGC
CGGGACGTGAGTCACCGTGGATGTCCGTAAAAGCGTACTTGTTTCGTTCG
AGTAGTTACGGCAGCACGGCTGGCCATCGGTTTGCAAAATATGAGCTACG
TTGCTCTGACTTAATTGACAGCAGTGCTTCGAAATGTTTTGACACGAAGA
ATTCAGCACCAAAAACCACAAAACCTCGGCTGGCCATCGGTTTGCAAAAT
ATGAGCTACGTAGCTCTGACTTAATTGACAGCAGTGCTTCGAAATGTTTT
GGCACGAAGAATTCAGCACCAAAAACCACAAAACCTCCATCTCCCAATCT
CCCCCGACAGTACCCAATGCGCTGTTTTCCACATTCGAACCGTGTCACCG
AAACGGTTTTTTTCACGTCAGGACGGTACGACGAGCTACTTTTTTTCCCT
GGAAGACCTGAGGCAGCTCTTCTGCGGCAGTTCTCCTGGCGGTTCGGGAC
TTCGAGATAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACT
TGTTCCGGCCAGAGCAACCGCGGGTGGTTTGACGGGGGGGCAAGCCTGGT
CGAAGAGGAGCTGTCGTTCGTGAGGAGGCAGTACGCGAACAGGGCGCAGA
AGGTGGCGCGGAGGAGAGTGTGGGTACACGGAAAATTCCGAAAACCGATG
CACTCGATGGCGGCACCGGTGTAGAAACTGTATACAAATGTTTGAGCAGG
TGTTTTCCCGAGTGTTGTCTCGTAGGGATGGACCAGTTTTTTTCAGGACT
GATACGTTGTCGTCGACAGCTGACGCTGCTGTACTTTTTTTTTCGTTTTC
ATTTTTCGTCGTCTCATTTATCCCATGCTCTTGGAACGTGCCCGTCGTGT
CGTGTAAATCGCCTGGGGTCTCGCCCTCGCCTAGACCATGCAAATCTTCA
TCTTGGTGCCATTTTTGTCACCGAAGTGGACAAAATCCGCCTGTCTGTCG
AGAAAATGGTCGGTTGCTTAACCCTCCGTCGTCTTTACTTCTGTTCCATG
CAGCAGTCAACCTTGCCTGGTGATTTGTTCTCCGTGAGGCAGGGCAAGCC
TCGGCAACGCGCGTCTTTCCCGTAGGACTTTTACCGCAAGGATGTGCGGA
ACAAGCCGCCGGGGCTTTATTGTGCGGTACAGCAAAGTAGTAGTGGAACG
TGATCTTATGTATGTTGAGCGTGTTGCTCTCGCTTCTGGGCGGCAGCCAG
GC
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Coding sequence (CDS) from alignment at Scaffold_54:88241..92842-

>EsuBft1476_5a-0001 ID=EsuBft1476_5a-0001|Name=EsuBft1476_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1074bp|location=Sequence derived from alignment at Scaffold_54:88241..92842- (Ectocarpus subulatus male Bft15b)
ATGACATGTTGGGTTAGCCCAATTGTCGCTACGAGGCGACGGTTTCACTT
TTTGTTCCCCTCTGTTCTGCAGGAAAAAGAGGCGCTTCAATCTGTCAAGG
GTAAGGGGCCACCTCTGTCCAAGTTCTGGAGAGACAAGTACGAGAGAGAG
GCGAGGAAGAGCTGGGACTTGTTCTACGGCCGTAACGCCGGGAATTTCTT
CAAGGACCGACACTATCTAGGAACGGTATTTCCGGAGCTGACTGAAACCG
GCGCCGACTTGGAGTTGTCACAAAGGCTCGAAAAATCGGAAGTATATCGC
AACGGCGACGGCGGTGAGACCGTTACCGAGAACGGTACTCGGAGAAAGGC
TCGTCGGCTGGGCAGAAGGACTCTGTTGGAGCTCGGTTGCGGCGTGGGCA
ACGCGGTATTTCCTCTCCTTGAAGAGAACCGTGGGCTCTTCGTCATCGCG
GCAGACCTGTCCCCTAGAGGGATCGGGGTGCTCAAGCAGCACCCCAAGTA
CAGCTGCGGACGGTGCGAGGCCTTAGTGCTAGACGCTACCGCCGACGACC
TCCCCCCCGGTGTGTTGGAAGACGGAGGCGTGGACTTGGTCCTGCTGCAG
TTCAGCCTGTCGGCCGTAGCTCCCAAAGACATGGCGACGGTGGCCAGGCT
CGTCGAGACGGCGCTCAAGCCCGGGGGCAAGCTGCTTGTGCGGGACTACG
GCAGGCACGATGAAGCGCAGCTAAGGTTTGCGAAAGGGCGGCGATTGGGC
GACAACTTCTACGTCCGACAGGACGGTACGACGAGCTACTTTTTTTCCCT
GGAAGACCTGAGGCAGCTCTTCTGCGGCAGTTCTCCTGGCGGTTCGGGAC
TTCGAGATAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACT
TGTTCCGGCCAGAGCAACCGCGGGTGGTTTGACGGGGGGGCAAGCCTGGT
CGAAGAGGAGCTGTCGTTCGTGAGGAGGCAGTACGCGAACAGGGCGCAGA
AGGTGGCGCGGAGGAGAGTGTGGGTACACGGAAAATTCCGAAAACCGATG
CACTCGATGGCGGCACCGGTGTAG
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