Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft1456_4 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | TMhelix |
| Protein domains | TRANSMEMBRANE |
| Protein domains | CYTOPLASMIC_DOMAIN |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 3 |
| Length | 61 |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-13_003400.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1456_4a-0001 ID=EsuBft1456_4a-0001|Name=EsuBft1456_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=612bp|location=Sequence derived from alignment at Scaffold_228:109980..111502+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGCTTGCATGGGGTCTGTTCCCTTTCCACCAAGCGCAGCTCATAGCTC
GCAACAATCAGAAAGCTATCAAGCCTGCAAAGCCTCTTCGAAGCGCGAGA
CCCGACGGATGTCTCGAGAAAAGGCGGCGTTGCGCCCCTTTGTTCGTTCG
TCTGCCGGTCGGTCGCTTGGCGGTGGCGGTCGCCGTGCTATGCTGGCCTT
GGTGTCAGCCGTCCACGTGGACCTGGTGGAGGGCAAATGTGAGTCGAGTG
TGGCAAGCGTCGCACCGACGATCGTTGTGAAACAGGAGTTCCTTGGCGGT
CATGGTGAAGCTCGGACCCATAGTCGGGGCCTCACGGTTCACGGAATGCC
CTCCGGTTCTTGTCCCGTCCCGTTGCTGATATTCACCCCGTGGCACGCAG
GGCTGATTGAGTTTCCGTCGGGGGTCAGGTGCATGTGGAACGAGCTACCG
CACGGTCTCCAGTTCGCGATTCTCTTTCTGATGCTGGGGATTCTGTACGG
AGTCAACCGACTCTTCGACAAAGCCGACGAGGCTATGTACACTCGCGTGA
CCTGCGCCACGGCAGGGCTACTGAGAGAGAGGAGGCACCACCACGCTCCC
CAAATGTGTTAG back to topprotein sequence of EsuBft1456_4a-0001 >EsuBft1456_4 ID=EsuBft1456_4|Name=EsuBft1456_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=203bp
MACMGSVPFPPSAAHSSQQSESYQACKASSKRETRRMSREKAALRPFVRS
SAGRSLGGGGRRAMLALVSAVHVDLVEGKCESSVASVAPTIVVKQEFLGG
HGEARTHSRGLTVHGMPSGSCPVPLLIFTPWHAGLIEFPSGVRCMWNELP
HGLQFAILFLMLGILYGVNRLFDKADEAMYTRVTCATAGLLRERRHHHAP
QMC back to topmRNA from alignment at Scaffold_228:109980..111502+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1456_4a-0001 ID=EsuBft1456_4a-0001|Name=EsuBft1456_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1523bp|location=Sequence derived from alignment at Scaffold_228:109980..111502+ (Ectocarpus subulatus male Bft15b)
ATGGCTTGCATGGGGTCTGTTCCCTTTCCACCAAGCGCAGCTCATAGCTC
GCAACAATCAGAAAGCTATCAAGCCTGCAAAGCCTCTTCGAAGCGCGAGA
CCCGACGGATGTCTCGAGAAAAGGCGGCGTTGCGCCCCTTTGTTCGTTCG
TCTGCCGGTCGGTCGCTTGGCGGTGGCGGTCGCCGTGCTATGCTGGCCTT
GGTGTCAGCCGTCCACGTGGACCTGGTGGAGGGCAAATGTGAGTCGAGTG
TGGCAAGCGTCGCACCGACGATCGTTGTGAAACAGGAGTTCCTTGGCGGT
CATGGTGAAGCTCGGACCCATGTATAGCGGCAACATGCACGTGTTGGCAT
TCGATTGATTCGTATTATCCTGTCCAACAGACTACGAATGACATGTTGCC
AGTCTTCGTAGGGGAGCAGCGAAGGACAGGATTTTGTGAGATTTTAGGGC
GCACCAGCCGGCCGGGGTACTACTGGAGGAATGCACAGAAGCACCCACCC
TTCTTCGTCTGGTCCTTGCTTCGATGGCGTTTTACTTTATTGTTATTTCT
GGTCACCAGAAGGCCTCAGCATTTTACCCCGCATTGACCGTGAAGATCGA
AACCACCGTGCGCGCGTTTCTGTCAATGCACACGACCTACCGTGCAGTCA
CTGTTCCCAAGCGTTTGGGAGCGACTTGAGGTGCTGGTTCGCGTGATGGC
GCCGAAATTCGAAACACACCGCCAATCTCAGAAAACGTCCAGGGGTGTGA
ACTATCTGAGGTCGACCGGTGGATCTTCCACGAGTTGTTTCTCCTAGCCC
TCCTTCCAAAAACCGATGCAGATATTGGAAACTTGTTTCATGTGTGCGAA
ATCTTCGACCTATTGCTCGACAGAGTCGGGGCCTCACGGTTCACGGAATG
CCCTCCGGTTCTTGTCCCGTCCCGTTGCTGATATTCACCCCGTGGCACGC
AGGGCTGATTGAGTTTCCGTCGGGGGTCAGGTGCATGTGGAACGAGCTAC
CGCACGGTCTCCAGTTCGCGATTCTCTTTCTGGTAAGAGAAGCGGTAGTC
GTCGAGTACGCTATCTTTTTTCAGGCAAAGTTAGTTCACGGCGGTGGTGC
AACAAGCGTGTAGATCTCGATCCTTGCCTACTACGTTCTGTATGCTGCTG
GCGGTTGTGTCGTAAACAGTAGGAAACATCGTGTCGCCTTCTCAAAGTGA
CCACCGGGGTCTCGGTCTCGAAGGCTGGAGAAACTTTGAGCTGTAAACCG
AAGTCTCGGTCTTGACGGCTCGAGAGTCATTGAATTCTCGACCGAATTCT
TCGTTTCGACGGCTGGAGCGTCTTTGAGTGATCGACCGGAGACCGAACCT
GCTCCAATCGTGCACAATAATGTGCTTCGGCTCACGCGCAGATGCTGGGG
ATTCTGTACGGAGTCAACCGACTCTTCGACAAAGCCGACGAGGCTATGTA
CACTCGCGTGACCTGCGCCACGGCAGGGCTACTGAGAGAGAGGAGGCACC
ACCACGCTCCCCAAATGTGTTAG back to topCoding sequence (CDS) from alignment at Scaffold_228:109980..111502+ >EsuBft1456_4a-0001 ID=EsuBft1456_4a-0001|Name=EsuBft1456_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=612bp|location=Sequence derived from alignment at Scaffold_228:109980..111502+ (Ectocarpus subulatus male Bft15b)
ATGGCTTGCATGGGGTCTGTTCCCTTTCCACCAAGCGCAGCTCATAGCTC
GCAACAATCAGAAAGCTATCAAGCCTGCAAAGCCTCTTCGAAGCGCGAGA
CCCGACGGATGTCTCGAGAAAAGGCGGCGTTGCGCCCCTTTGTTCGTTCG
TCTGCCGGTCGGTCGCTTGGCGGTGGCGGTCGCCGTGCTATGCTGGCCTT
GGTGTCAGCCGTCCACGTGGACCTGGTGGAGGGCAAATGTGAGTCGAGTG
TGGCAAGCGTCGCACCGACGATCGTTGTGAAACAGGAGTTCCTTGGCGGT
CATGGTGAAGCTCGGACCCATAGTCGGGGCCTCACGGTTCACGGAATGCC
CTCCGGTTCTTGTCCCGTCCCGTTGCTGATATTCACCCCGTGGCACGCAG
GGCTGATTGAGTTTCCGTCGGGGGTCAGGTGCATGTGGAACGAGCTACCG
CACGGTCTCCAGTTCGCGATTCTCTTTCTGATGCTGGGGATTCTGTACGG
AGTCAACCGACTCTTCGACAAAGCCGACGAGGCTATGTACACTCGCGTGA
CCTGCGCCACGGCAGGGCTACTGAGAGAGAGGAGGCACCACCACGCTCCC
CAAATGTGTTAG back to top
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