EsuBft1456_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1456_3a-0001
Unique Name	EsuBft1456_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_228	contig	Scaffold_228:89649..91110 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	44056.XP_009041040.1
ProteomeId	EsuBft1456_3
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	SignalP-noTM
Protein domains	Coil
Protein domains	SIGNAL_PEPTIDE_C_REGION
Protein domains	SIGNAL_PEPTIDE
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	SIGNAL_PEPTIDE_H_REGION
Protein domains	PTHR22930
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Max annot lvl	2759\|Eukaryota
Length	75
Hectar predicted targeting category	signal peptide
Evalue	4.03e-28
EggNOG OGs	2E2RF@1\|root,2S9YA@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14
Description	Plant transposon protein
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1456_3a	EsuBft1456_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_228 89649..91110 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1456_3a-0001-exon	EsuBft1456_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_228 89649..90005 -
EsuBft1456_3a-0001-exon	agat-exon-78421	Ectocarpus subulatus male Bft15b	exon	Scaffold_228 90709..91110 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1456_3a-0001-exon	agat-three_prime_utr-4028	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_228 89649..89669 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1456_3a-0001-cds	EsuBft1456_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_228 89670..90005 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1456_3a-0001	EsuBft1456_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_228 89670..91110 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_228:89649..91110-
coding sequence from alignment at Scaffold_228:89649..91110-

spliced messenger RNA

>EsuBft1456_3a-0001 ID=EsuBft1456_3a-0001|Name=EsuBft1456_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=759bp|location=Sequence derived from alignment at Scaffold_228:89649..91110- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCGCCTCGTAGAGTTGAGGGCGGTGTTGACCGTGCTCTCGTTGGC
GCTTGCCGCGCTGCATCATCAACAGCAGCTTCTGGTCGCGTTGCTGCGAC
AATTGCACCGGGAGGAAGATGAAGAGGACGACGAAGAACCGCGACCCAAG
CGCCGCCGCACGGTTCGGCCGAGAGCGGACTACCGCACCTTGCCTTGGGC
AAGGATGCTTGAGAAGGCCGACCTATTGCAGGACCCTTCGACGAGAGAGG
CAAAGCAGTTTCGGCGAAGGTTCCGCGTACCCTACCCTTTCTTCCTCTCC
CTTGTAGACGAAGTGAAGGCGGGGAACTGGCCTGGATTCACGACAGACGA
GTTCGAGCTTGGCGGGAGAGGCACCAGGCGCTGCATCCCCGTGGAAACAA
AGGTTTTGGCGGTGCTGCGCATACTGGGCAGAGGAAACTATTTCGACGAT
GTCTCGGAGGTCACCGGCATGGGCGAGGCCACGGTGAACCACATGTTCCA
CAAGTTCACGGAGAGATTCGCGCGTGAGTTTTTTCCGGTATGGGTGAGGA
TGCCGAATGAAGACGAGCTGAAGGACATCATGAAAACCTATGACGAGGTT
GGAATGTCGGGCGCCATGGGGTCGATGGATGGGACGCACATTGAGTGGAC
GTTGTGTCCTTATTCCCAACGCTCGTCGCACATTGGCAAGGAAGGCTACG
CTACCCTCGTGTTCAATGTTGCCGTCAGCCACTGTTAGCGTGTTTTGTCG
TGTACGCGG

protein sequence of EsuBft1456_3a-0001

>EsuBft1456_3 ID=EsuBft1456_3|Name=EsuBft1456_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=245bp
MVRLVELRAVLTVLSLALAALHHQQQLLVALLRQLHREEDEEDDEEPRPK
RRRTVRPRADYRTLPWARMLEKADLLQDPSTREAKQFRRRFRVPYPFFLS
LVDEVKAGNWPGFTTDEFELGGRGTRRCIPVETKVLAVLRILGRGNYFDD
VSEVTGMGEATVNHMFHKFTERFAREFFPVWVRMPNEDELKDIMKTYDEV
GMSGAMGSMDGTHIEWTLCPYSQRSSHIGKEGYATLVFNVAVSHC

mRNA from alignment at Scaffold_228:89649..91110-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1456_3a-0001 ID=EsuBft1456_3a-0001|Name=EsuBft1456_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1462bp|location=Sequence derived from alignment at Scaffold_228:89649..91110- (Ectocarpus subulatus male Bft15b)
ATGGTGCGCCTCGTAGAGTTGAGGGCGGTGTTGACCGTGCTCTCGTTGGC
GCTTGCCGCGCTGCATCATCAACAGCAGCTTCTGGTCGCGTTGCTGCGAC
AATTGCACCGGGAGGAAGATGAAGAGGACGACGAAGAACCGCGACCCAAG
CGCCGCCGCACGGTTCGGCCGAGAGCGGACTACCGCACCTTGCCTTGGGC
AAGGATGCTTGAGAAGGCCGACCTATTGCAGGACCCTTCGACGAGAGAGG
CAAAGCAGTTTCGGCGAAGGTTCCGCGTACCCTACCCTTTCTTCCTCTCC
CTTGTAGACGAAGTGAAGGCGGGGAACTGGCCTGGATTCACGACAGACGA
GTTCGAGCTTGGCGGGAGAGGCACCAGGCGCTGCATCCCCGTGGAAACAA
AGGTGAGCAAACACGCGCTGCACCCTAAAGGTGGGCGTGGGGGTTTGCAG
CATGTATGTTGTGTTGCTCTCCAAGACCAGATGTCGATCAACAAACGAGC
ACGTACATTCCCCCCGTACATCCGTATCTCGGCACACAGAGAGGAGAGAG
CGCAGTCCTCTCCGAGGGTTTGCCGGCGGTGAAGGTTAGCTCTCATCACA
CACACTCGTCCACACTTACCATCACCAGGAATTCCACGCAGTCCTCTAGG
GGCGTGTAAGGTGCTCCTATGATATAGAGATTGCCAGCCTTATCTTACGA
AACAACGAGAGTCGTCCACGGAAGGATCGGCGTACCTCAACAGCAAGCTG
CTCTCCCGACAAACCAAGCTGGAGTCCATCCCTCCGAAACACAAACATCT
TTTTTGTGTTGTTTCTTCCGCACCGTAGCTCTCTAGTCCAAAACATCGAT
GGGAGCACATCGATGGGAGCTCGTAGTCATGTATGCTCTTCTTGCCAGTG
TCGGACATCAACTCTGCTACTGCTGCTCGTCGCTCACTATCAGAGTTGCT
CCTAAACTGGACGAAAATCTATCGTCGCTACTTGCACTGAAGCACACACC
GCCGTACCGTTGACGTATTTATGTTGACTCTGGCTATCACACAACATGAA
GTCCGCAAACGAATCGTGTCCCTGGCCGCCGTTGTCTGGTGATTTATTCG
AACAGGTTTTGGCGGTGCTGCGCATACTGGGCAGAGGAAACTATTTCGAC
GATGTCTCGGAGGTCACCGGCATGGGCGAGGCCACGGTGAACCACATGTT
CCACAAGTTCACGGAGAGATTCGCGCGTGAGTTTTTTCCGGTATGGGTGA
GGATGCCGAATGAAGACGAGCTGAAGGACATCATGAAAACCTATGACGAG
GTTGGAATGTCGGGCGCCATGGGGTCGATGGATGGGACGCACATTGAGTG
GACGTTGTGTCCTTATTCCCAACGCTCGTCGCACATTGGCAAGGAAGGCT
ACGCTACCCTCGTGTTCAATGTTGCCGTCAGCCACTGTTAGCGTGTTTTG
TCGTGTACGCGG

Coding sequence (CDS) from alignment at Scaffold_228:89649..91110-

>EsuBft1456_3a-0001 ID=EsuBft1456_3a-0001|Name=EsuBft1456_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=738bp|location=Sequence derived from alignment at Scaffold_228:89649..91110- (Ectocarpus subulatus male Bft15b)
ATGGTGCGCCTCGTAGAGTTGAGGGCGGTGTTGACCGTGCTCTCGTTGGC
GCTTGCCGCGCTGCATCATCAACAGCAGCTTCTGGTCGCGTTGCTGCGAC
AATTGCACCGGGAGGAAGATGAAGAGGACGACGAAGAACCGCGACCCAAG
CGCCGCCGCACGGTTCGGCCGAGAGCGGACTACCGCACCTTGCCTTGGGC
AAGGATGCTTGAGAAGGCCGACCTATTGCAGGACCCTTCGACGAGAGAGG
CAAAGCAGTTTCGGCGAAGGTTCCGCGTACCCTACCCTTTCTTCCTCTCC
CTTGTAGACGAAGTGAAGGCGGGGAACTGGCCTGGATTCACGACAGACGA
GTTCGAGCTTGGCGGGAGAGGCACCAGGCGCTGCATCCCCGTGGAAACAA
AGGTTTTGGCGGTGCTGCGCATACTGGGCAGAGGAAACTATTTCGACGAT
GTCTCGGAGGTCACCGGCATGGGCGAGGCCACGGTGAACCACATGTTCCA
CAAGTTCACGGAGAGATTCGCGCGTGAGTTTTTTCCGGTATGGGTGAGGA
TGCCGAATGAAGACGAGCTGAAGGACATCATGAAAACCTATGACGAGGTT
GGAATGTCGGGCGCCATGGGGTCGATGGATGGGACGCACATTGAGTGGAC
GTTGTGTCCTTATTCCCAACGCTCGTCGCACATTGGCAAGGAAGGCTACG
CTACCCTCGTGTTCAATGTTGCCGTCAGCCACTGTTAG