EsuBft144_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft144_8a-0001
Unique NameEsuBft144_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_228contigScaffold_228:524361..527513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G2K6
ProteomeIdEsuBft144_8
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length219
Hectar predicted targeting categoryother localisation
Evalue2.64e-21
EggNOG OGsKOG1591@1|root,KOG1591@2759|Eukaryota
Ec32 ortholog descriptionProlyl 4-hydroxylase, alpha subunit
Ec32 orthologEc-11_002580.1
Date last modified2016-06-14
Date creation2016-06-14
KEGG rclassRC00478
KEGG koko:K00472
KEGG ReactionR01252
KEGG Pathwayko00330,ko01100,map00330,map01100
EC1.14.11.2
Descriptionprocollagen-proline 4-dioxygenase activity
COG categoryS
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft144_8aEsuBft144_8aEctocarpus subulatus male Bft15bgeneScaffold_228 524361..527513 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft144_8a-0001-exonagat-exon-9004Ectocarpus subulatus male Bft15bexonScaffold_228 524361..524942 +
EsuBft144_8a-0001-exonEsuBft144_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_228 525901..527513 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft144_8a-0001-exonagat-five_prime_utr-2616Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_228 524361..524558 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft144_8a-0001-cdsEsuBft144_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_228 524559..524942 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft144_8a-0001-exonagat-three_prime_utr-3977Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_228 526786..527513 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft144_8a-0001EsuBft144_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_228 524559..526785 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft144_8a-0001 ID=EsuBft144_8a-0001|Name=EsuBft144_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2195bp|location=Sequence derived from alignment at Scaffold_228:524361..527513+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ACAACCCACAACCCGTTGATTGTTGGACGGAACTCTGTTGTGCGGTTTGG
AACAACACCCACACCCTAGTAGGAGGAGGAACCGGCTGTAGTACGGCTCG
TACTCCCTGCCGTCTTTATGCGGTGCTGTGTGGCTGCTAGACCCAGACAC
AGCAACACACTTGTTGAACCCCACGGGCTACGCCGCTAGGCGTCAACAAT
GAGCAGTTCCAGCGGGGGCGGGAGCAGCGACCATCGTGGCACCCCCAGCA
AGGGCGGGCGAAGCGACACTAATGGCACAGTGAGCCACGTCACCTCGCAG
CAGGCGGGCGTTTACAGCGGCAGCTACGCTGTGCCTGGAGTGTTTGGCGG
GCAAACTGTAACTTCCCAACATGGAGGAGGGTCAGCTCCTCGCCCGCCCT
CAGTTTCGGCACCACCAGCAGCACCGTCACAACCACCGCAAGCAGCAGGC
AGCATCAAGAGCACCGCGAACCACATGGTGCTGGATAACGACCCATCCCT
TGACCATCCTCCTGCCGTCACCTCGGTGGCGTGGGGTGGCGCTACCATCG
CTTCCCCGGCCGTGTTGTTTGGGCAGCAGGAGAGCATTGCGGCCACAAGC
ACCTTGCAATTCGCACAGCTAGGACAACAGCTGCTCCCGCAGCAGCAGCT
TCACGGATTCCGAGGGATCGGATCGTCCGTTGCCCCAGCCGCTCTGGTTC
CACCGGCCCAACTGGCTGGTATCCACCCAACCGCTTCGCTTACTTCAACG
ACCTCCGTCGACACTGCTGTCAGCACGCATGTAGTCGATTGTGGTGTTGC
TGGCGGGGGGGCGGTGACATCAGTGCTGCAACAGCACCCCCCCCCACCCC
TCAGCGATATTGGTGGCGCTGTAGTGCCTCTCCCCGTGGCAAACAGCGGT
CCCACATACACCTTCAACGGCGGTGGCGGCGGAGGCGGCGTTAGTGACCC
GCTGACGAGGCCTGTCTTTCAGCCTGGATTCAACCCAACGGCACTGCAGA
ACCAACAGCAGCCGGCACCGGTGTTCACGACCCCGTCGTCCACGGGTTTC
CCACTCTCTGCCTTCGTTGGCGAGCAGCAACAGCAGCAGAAGGCGGCACC
GGTGTTCACGATCCCGCCATCCACTGGATTGGCCCCCTCTGCCTTTGCTG
GCGAGCAACAACAGCCAATGGTGATGCCAGTGATTCAGCAGCAGCAGCAG
CAGCAGCAGCATGAACAGCAGCAGCAACAACAACCAGGAACGCCTGCTGC
GAGCATCACTGCAGCGTTCGCGCCATTTCCCCCGCAGTCTTTCTTGCAGC
TTAATCCGGTGAGAACACGGATGAATCGCGTTGTCCAATCAGTAGCGGCT
TTGCATGCAATCTCAAAACCCTTCCATATCCTCCAACCATGCATGCTGAA
CCAAGCCAACGTTCCATCAGCCGCCAGTACACCCAATGTTGTCATTTCGA
GACCATTTTCTGGCTAGGCGGCTGTCGCTCACTTGTTTTCGTTTGTCTCA
CCACGCTTGGCGTGTTTTTCATCTGCTTCGTTGTGCACCTCTTTTGAAAC
CTTTCGACCAAGGGCAGAGCTTGTACCACGGGGGTGGGATCGGAATTTGA
GATTTCGACTACGAGCGGCTAGCCTGGCCCCCGGGCCGAGGAGACTGACT
GATTGTTGGAGGCGCCGCCCCCCGCAGCGTGTTTTTGACGGGATTTGCGC
GCGCGGCTCGCAGGTCCAAGTGCGACATTCTCGCGACCCCCTGGTTGCTC
AAATGTCCCCTACTCCACCCGCATGATGCAATGCCTTTGTCATTTCTTCC
AACTCGCATCTCGTGACAACAGCACTTGCCGTGCGTGCGAGCGTGTGGTA
TGTATTGACACACGTACTCTGCCGATGGCGCCGATTGCACACATATTTCA
CGTTTTTTTGGTAGCGTTCATGATGTTGTGATACTTTCATGGACTCGCAC
ACTCTCCCGATGTCACCGTGTACTTCACACGTGCTTGCCTGCGGGTGGTG
TGTTGGGCGTAACGGGGGCTATTGTCTAATGATCAGCCGCCAATCAGGTT
TTCCTAGTACATGTCTTTCGTTCTTCGCTGCGCTCTTTCAACCAATACGC
ATGGTGTTCGCGCCATTTCACGTCAACCCCGACCGCTGTGCCTACTCGTG
GCCCGGGCGTGTGCGTGTGTGCGCTTGTTGGCGTGTGTGCGGCGT
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protein sequence of EsuBft144_8a-0001

>EsuBft144_8 ID=EsuBft144_8|Name=EsuBft144_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=422bp
MSSSSGGGSSDHRGTPSKGGRSDTNGTVSHVTSQQAGVYSGSYAVPGVFG
GQTVTSQHGGGSAPRPPSVSAPPAAPSQPPQAAGSIKSTANHMVLDNDPS
LDHPPAVTSVAWGGATIASPAVLFGQQESIAATSTLQFAQLGQQLLPQQQ
LHGFRGIGSSVAPAALVPPAQLAGIHPTASLTSTTSVDTAVSTHVVDCGV
AGGGAVTSVLQQHPPPPLSDIGGAVVPLPVANSGPTYTFNGGGGGGGVSD
PLTRPVFQPGFNPTALQNQQQPAPVFTTPSSTGFPLSAFVGEQQQQQKAA
PVFTIPPSTGLAPSAFAGEQQQPMVMPVIQQQQQQQQHEQQQQQQPGTPA
ASITAAFAPFPPQSFLQLNPVRTRMNRVVQSVAALHAISKPFHILQPCML
NQANVPSAASTPNVVISRPFSG
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mRNA from alignment at Scaffold_228:524361..527513+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft144_8a-0001 ID=EsuBft144_8a-0001|Name=EsuBft144_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3153bp|location=Sequence derived from alignment at Scaffold_228:524361..527513+ (Ectocarpus subulatus male Bft15b)
ACAACCCACAACCCGTTGATTGTTGGACGGAACTCTGTTGTGCGGTTTGG
AACAACACCCACACCCTAGTAGGAGGAGGAACCGGCTGTAGTACGGCTCG
TACTCCCTGCCGTCTTTATGCGGTGCTGTGTGGCTGCTAGACCCAGACAC
AGCAACACACTTGTTGAACCCCACGGGCTACGCCGCTAGGCGTCAACAAT
GAGCAGTTCCAGCGGGGGCGGGAGCAGCGACCATCGTGGCACCCCCAGCA
AGGGCGGGCGAAGCGACACTAATGGCACAGTGAGCCACGTCACCTCGCAG
CAGGCGGGCGTTTACAGCGGCAGCTACGCTGTGCCTGGAGTGTTTGGCGG
GCAAACTGTAACTTCCCAACATGGAGGAGGGTCAGCTCCTCGCCCGCCCT
CAGTTTCGGCACCACCAGCAGCACCGTCACAACCACCGCAAGCAGCAGGC
AGCATCAAGAGCACCGCGAACCACATGGTGCTGGATAACGACCCATCCCT
TGACCATCCTCCTGCCGTCACCTCGGTGGCGTGGGGTGGCGCTACCATCG
CTTCCCCGGCCGTGTTGTTTGGGCAGCAGGAGGTGCGCGTGCATGTCTTT
TTTTTGCAAGTTTTGTTGTATTCTATGCATGCGATAGCAGCAGTCCACAC
CTGGAGGTGTCCCTCTAACCCGTTTGGTAGTACAAGTAGTGCATACTCTT
TATCATACTCTTTAAAGACGAATCCTTTGAAGGGACAGTTGTCCTGATTG
GTTGATTCATTGTGTATTTTCTAAAGGTGAAGGGCGTCGCAGACGTGCAG
ACCTAGACCGATCTTGATGTGGGCGGGTGATTTTTTATTTATTTTTTCTT
AATATCACGCAAGAATCCATCTATACAAAAATGTCTCAAGGTAGATTAGC
AATGAATCCTATAGAGCGTGAGCGAAAGACTACCTGTATGTCTACGGTTT
CCCAGACGGCATACAACGATAACTCCCCTGTGGGTAACAGGCTCAACAAG
GCAGTTTGGTAGCCATCTTGTGTATCTATCTGTATGTTATGTTGGGAAGT
TGTAGACGCAAGATTTAGGGGAACTCGGTTTGTCGGGTGTTCTACTATAG
CACCCTTCTGTGGTTGACGAACACGTAGAACTAGTAGTCTCGGCAGAGGC
TGGGGTTCTAGGTTCCAAAGGGTCATGCTACCAATGATCGCTATAAAGAT
TTTGGTGCAGGGGTTCTTACCCGAGCTCACAAGTGGTGCTCAAGTCCTTA
TCCTTTGATTTTTTCGAGGATCAATTTCTCAACTCCTGGGTTATTGCGTG
CGGGCGCATCCTTTAGTTCGGTCCACATGGTACGAAACGTTGGTATGTCT
TAGGACATTTGTGGACAACGCGTTCGTGTGCATGGAAGAGGGTGTGGTTT
GAAGCCCACATGGTGGTGTGTATCCGTGCAGCCTTTGGTTGGCCCATAAC
ATCGACAGACCGGTCTCCTCGTTCGGTCTTCGAATCCGTCGTGCCCATCT
CTTCGTGTGTTCATTTCGTCCACACCTGCTTGGGGGCCAGAGCATTGCGG
CCACAAGCACCTTGCAATTCGCACAGCTAGGACAACAGCTGCTCCCGCAG
CAGCAGCTTCACGGATTCCGAGGGATCGGATCGTCCGTTGCCCCAGCCGC
TCTGGTTCCACCGGCCCAACTGGCTGGTATCCACCCAACCGCTTCGCTTA
CTTCAACGACCTCCGTCGACACTGCTGTCAGCACGCATGTAGTCGATTGT
GGTGTTGCTGGCGGGGGGGCGGTGACATCAGTGCTGCAACAGCACCCCCC
CCCACCCCTCAGCGATATTGGTGGCGCTGTAGTGCCTCTCCCCGTGGCAA
ACAGCGGTCCCACATACACCTTCAACGGCGGTGGCGGCGGAGGCGGCGTT
AGTGACCCGCTGACGAGGCCTGTCTTTCAGCCTGGATTCAACCCAACGGC
ACTGCAGAACCAACAGCAGCCGGCACCGGTGTTCACGACCCCGTCGTCCA
CGGGTTTCCCACTCTCTGCCTTCGTTGGCGAGCAGCAACAGCAGCAGAAG
GCGGCACCGGTGTTCACGATCCCGCCATCCACTGGATTGGCCCCCTCTGC
CTTTGCTGGCGAGCAACAACAGCCAATGGTGATGCCAGTGATTCAGCAGC
AGCAGCAGCAGCAGCAGCATGAACAGCAGCAGCAACAACAACCAGGAACG
CCTGCTGCGAGCATCACTGCAGCGTTCGCGCCATTTCCCCCGCAGTCTTT
CTTGCAGCTTAATCCGGTGAGAACACGGATGAATCGCGTTGTCCAATCAG
TAGCGGCTTTGCATGCAATCTCAAAACCCTTCCATATCCTCCAACCATGC
ATGCTGAACCAAGCCAACGTTCCATCAGCCGCCAGTACACCCAATGTTGT
CATTTCGAGACCATTTTCTGGCTAGGCGGCTGTCGCTCACTTGTTTTCGT
TTGTCTCACCACGCTTGGCGTGTTTTTCATCTGCTTCGTTGTGCACCTCT
TTTGAAACCTTTCGACCAAGGGCAGAGCTTGTACCACGGGGGTGGGATCG
GAATTTGAGATTTCGACTACGAGCGGCTAGCCTGGCCCCCGGGCCGAGGA
GACTGACTGATTGTTGGAGGCGCCGCCCCCCGCAGCGTGTTTTTGACGGG
ATTTGCGCGCGCGGCTCGCAGGTCCAAGTGCGACATTCTCGCGACCCCCT
GGTTGCTCAAATGTCCCCTACTCCACCCGCATGATGCAATGCCTTTGTCA
TTTCTTCCAACTCGCATCTCGTGACAACAGCACTTGCCGTGCGTGCGAGC
GTGTGGTATGTATTGACACACGTACTCTGCCGATGGCGCCGATTGCACAC
ATATTTCACGTTTTTTTGGTAGCGTTCATGATGTTGTGATACTTTCATGG
ACTCGCACACTCTCCCGATGTCACCGTGTACTTCACACGTGCTTGCCTGC
GGGTGGTGTGTTGGGCGTAACGGGGGCTATTGTCTAATGATCAGCCGCCA
ATCAGGTTTTCCTAGTACATGTCTTTCGTTCTTCGCTGCGCTCTTTCAAC
CAATACGCATGGTGTTCGCGCCATTTCACGTCAACCCCGACCGCTGTGCC
TACTCGTGGCCCGGGCGTGTGCGTGTGTGCGCTTGTTGGCGTGTGTGCGG
CGT
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Coding sequence (CDS) from alignment at Scaffold_228:524361..527513+

>EsuBft144_8a-0001 ID=EsuBft144_8a-0001|Name=EsuBft144_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1269bp|location=Sequence derived from alignment at Scaffold_228:524361..527513+ (Ectocarpus subulatus male Bft15b)
ATGAGCAGTTCCAGCGGGGGCGGGAGCAGCGACCATCGTGGCACCCCCAG
CAAGGGCGGGCGAAGCGACACTAATGGCACAGTGAGCCACGTCACCTCGC
AGCAGGCGGGCGTTTACAGCGGCAGCTACGCTGTGCCTGGAGTGTTTGGC
GGGCAAACTGTAACTTCCCAACATGGAGGAGGGTCAGCTCCTCGCCCGCC
CTCAGTTTCGGCACCACCAGCAGCACCGTCACAACCACCGCAAGCAGCAG
GCAGCATCAAGAGCACCGCGAACCACATGGTGCTGGATAACGACCCATCC
CTTGACCATCCTCCTGCCGTCACCTCGGTGGCGTGGGGTGGCGCTACCAT
CGCTTCCCCGGCCGTGTTGTTTGGGCAGCAGGAGAGCATTGCGGCCACAA
GCACCTTGCAATTCGCACAGCTAGGACAACAGCTGCTCCCGCAGCAGCAG
CTTCACGGATTCCGAGGGATCGGATCGTCCGTTGCCCCAGCCGCTCTGGT
TCCACCGGCCCAACTGGCTGGTATCCACCCAACCGCTTCGCTTACTTCAA
CGACCTCCGTCGACACTGCTGTCAGCACGCATGTAGTCGATTGTGGTGTT
GCTGGCGGGGGGGCGGTGACATCAGTGCTGCAACAGCACCCCCCCCCACC
CCTCAGCGATATTGGTGGCGCTGTAGTGCCTCTCCCCGTGGCAAACAGCG
GTCCCACATACACCTTCAACGGCGGTGGCGGCGGAGGCGGCGTTAGTGAC
CCGCTGACGAGGCCTGTCTTTCAGCCTGGATTCAACCCAACGGCACTGCA
GAACCAACAGCAGCCGGCACCGGTGTTCACGACCCCGTCGTCCACGGGTT
TCCCACTCTCTGCCTTCGTTGGCGAGCAGCAACAGCAGCAGAAGGCGGCA
CCGGTGTTCACGATCCCGCCATCCACTGGATTGGCCCCCTCTGCCTTTGC
TGGCGAGCAACAACAGCCAATGGTGATGCCAGTGATTCAGCAGCAGCAGC
AGCAGCAGCAGCATGAACAGCAGCAGCAACAACAACCAGGAACGCCTGCT
GCGAGCATCACTGCAGCGTTCGCGCCATTTCCCCCGCAGTCTTTCTTGCA
GCTTAATCCGGTGAGAACACGGATGAATCGCGTTGTCCAATCAGTAGCGG
CTTTGCATGCAATCTCAAAACCCTTCCATATCCTCCAACCATGCATGCTG
AACCAAGCCAACGTTCCATCAGCCGCCAGTACACCCAATGTTGTCATTTC
GAGACCATTTTCTGGCTAG
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