EsuBft144_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft144_6a-0001
Unique NameEsuBft144_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_228contigScaffold_228:543834..544730 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft144_6
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length81
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_003940.2
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft144_6aEsuBft144_6aEctocarpus subulatus male Bft15bgeneScaffold_228 543834..544730 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft144_6a-0001-exonEsuBft144_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_228 543834..543851 +
EsuBft144_6a-0001-exonagat-exon-8998Ectocarpus subulatus male Bft15bexonScaffold_228 543934..544730 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft144_6a-0001-cdsEsuBft144_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_228 543834..543851 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft144_6a-0001-exonagat-three_prime_utr-3975Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_228 544093..544730 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft144_6a-0001EsuBft144_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_228 543834..544092 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft144_6a-0001 ID=EsuBft144_6a-0001|Name=EsuBft144_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=815bp|location=Sequence derived from alignment at Scaffold_228:543834..544730+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGCGATCCTTGAAGGACATGATGCCGTTCGTCAACTCCTTGCTCGA
TCTGCCCCTTCAGGCCCACAGGTCGAGAAGGTGGGCCTCCCTGGATCCGC
GCGACATCTGGGGGAGGTTCGTCGATATCGCGTGTAACAGATTGGTCATT
CGAGTGCGGCCGGCGTGGCCGCGTTAGCCTGCCACCAGGGACGAGTATTC
CCGGGTTTCCCCGTCCGCCATTTTTTTCCGTTTGGGCCGATTTTTTCCGG
TTGGGCGATTTTTTACCGTCTGGGCCGGGTCCCGACGGAAAAATCCACCG
GGTTATTGAGGATTTTCAGTTTTTTTTGGCCGCAAGAAATACGCCGGCAA
CTTTTTCCGTCGAGGACGGGACGAAGCGGCACGTACGAGCGCAAGCAATC
AAGCGCTCCCTGCGCAGAAGGCTGAGCAGCGGAGACTGGGGTTTCTTTCA
CAGCAACGTGTGTGCAGTTGTTCAGTCGGTATTCGGGCGCGCGAGAAGGT
TTTTGGTGCCCGCGTGCGGCGGAACAGCAGCTCGCGTTTTATTTTGAACC
GGATCATCTTTGATCGAGGTAGGAGGGCCTCTGGAAGAGGAGAGAGGATC
GCGACTCAGCGCGAGGCGGCAGGAGCCCAGGCGGCAAGAGCCCGACCGTC
TGTGAGTAGGTAGGAGGAGAAGGAGGAGGGCGCGTCCCTGAGTGGTTGCA
TGGACAGCAGTGCGACCGGAGAGGAGAGCGACTCCGGCAGCAGCTCCAGC
TTGGTCGTAGATGTGGTTCCTGCCTCGCGTGCACGTGGAGGTGGTACGCA
GGAAGTCAGCTGTGA
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protein sequence of EsuBft144_6a-0001

>EsuBft144_6 ID=EsuBft144_6|Name=EsuBft144_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=58bp
MRRSLKDMMPFVNSLLDLPLQAHRSRRWASLDPRDIWGRFVDIACNRLVI
RVRPAWPR
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mRNA from alignment at Scaffold_228:543834..544730+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft144_6a-0001 ID=EsuBft144_6a-0001|Name=EsuBft144_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=897bp|location=Sequence derived from alignment at Scaffold_228:543834..544730+ (Ectocarpus subulatus male Bft15b)
ATGCGGCGATCCTTGAAGGTACGCACATGCCAATAGGCTAGACTATACAA
ATCAATTCCTCAACTGACCTTTCCTTCCGGCGTTTCTTGTGCGGTCACAG
GACATGATGCCGTTCGTCAACTCCTTGCTCGATCTGCCCCTTCAGGCCCA
CAGGTCGAGAAGGTGGGCCTCCCTGGATCCGCGCGACATCTGGGGGAGGT
TCGTCGATATCGCGTGTAACAGATTGGTCATTCGAGTGCGGCCGGCGTGG
CCGCGTTAGCCTGCCACCAGGGACGAGTATTCCCGGGTTTCCCCGTCCGC
CATTTTTTTCCGTTTGGGCCGATTTTTTCCGGTTGGGCGATTTTTTACCG
TCTGGGCCGGGTCCCGACGGAAAAATCCACCGGGTTATTGAGGATTTTCA
GTTTTTTTTGGCCGCAAGAAATACGCCGGCAACTTTTTCCGTCGAGGACG
GGACGAAGCGGCACGTACGAGCGCAAGCAATCAAGCGCTCCCTGCGCAGA
AGGCTGAGCAGCGGAGACTGGGGTTTCTTTCACAGCAACGTGTGTGCAGT
TGTTCAGTCGGTATTCGGGCGCGCGAGAAGGTTTTTGGTGCCCGCGTGCG
GCGGAACAGCAGCTCGCGTTTTATTTTGAACCGGATCATCTTTGATCGAG
GTAGGAGGGCCTCTGGAAGAGGAGAGAGGATCGCGACTCAGCGCGAGGCG
GCAGGAGCCCAGGCGGCAAGAGCCCGACCGTCTGTGAGTAGGTAGGAGGA
GAAGGAGGAGGGCGCGTCCCTGAGTGGTTGCATGGACAGCAGTGCGACCG
GAGAGGAGAGCGACTCCGGCAGCAGCTCCAGCTTGGTCGTAGATGTGGTT
CCTGCCTCGCGTGCACGTGGAGGTGGTACGCAGGAAGTCAGCTGTGA
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Coding sequence (CDS) from alignment at Scaffold_228:543834..544730+

>EsuBft144_6a-0001 ID=EsuBft144_6a-0001|Name=EsuBft144_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=177bp|location=Sequence derived from alignment at Scaffold_228:543834..544730+ (Ectocarpus subulatus male Bft15b)
ATGCGGCGATCCTTGAAGGACATGATGCCGTTCGTCAACTCCTTGCTCGA
TCTGCCCCTTCAGGCCCACAGGTCGAGAAGGTGGGCCTCCCTGGATCCGC
GCGACATCTGGGGGAGGTTCGTCGATATCGCGTGTAACAGATTGGTCATT
CGAGTGCGGCCGGCGTGGCCGCGTTAG
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