EsuBft144_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft144_5a-0001
Unique Name	EsuBft144_5a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_228	contig	Scaffold_228:559625..561128 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft144_5
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	118
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft144_5a	EsuBft144_5a	Ectocarpus subulatus male Bft15b	gene	Scaffold_228 559625..561128 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft144_5a-0001-exon	agat-exon-8997	Ectocarpus subulatus male Bft15b	exon	Scaffold_228 559625..560030 +
EsuBft144_5a-0001-exon	EsuBft144_5a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_228 560353..561128 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft144_5a-0001-cds	EsuBft144_5a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_228 559625..560030 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft144_5a-0001	EsuBft144_5	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_228 559625..561128 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_228:559625..561128+
coding sequence from alignment at Scaffold_228:559625..561128+

spliced messenger RNA

>EsuBft144_5a-0001 ID=EsuBft144_5a-0001|Name=EsuBft144_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1182bp|location=Sequence derived from alignment at Scaffold_228:559625..561128+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCTCTACCGCAGATGATGATCGGACTGGTACGAGCGGGGATCAGAC
CAGCATGCCCGGGCAGGAGGGTAGTGATGCGGAGTTTGCACGTTCGCAAC
AGCAGGTTTCGCGATTGGGGACCCTGGTGGAGGAGGCGATGGAGAAGAAA
GGGCCTGGTAACGTCGTGGTGGACGAAGCCAGTAGGGGCGGCTGGGCTGC
CGCCCCCGCAGACCAAGATGAGCCCCTACAGCCGCACGGCGGAGGTGGAG
CGGTTCTTCAGCAAGGAGCGACGAGTGGACAAGGACCACGTCAACTGTTA
GAAGGCAGCTGGGCCAGCAGATCGGGAGCGAATCCTGCGGGACCAGACGG
AGTCGGCCCAGGCGTAAGACCAGACCGCGAGGACGCGATGGGGTTCAACT
TCCCAGACAAGGCGACTGTGAACAAGTGCATGATCGTCAAGGAGATCCTC
TCCGAGCTAGAAAAGATCTACGACCCGGGGTCGCAAGGCTCGAAACATGC
CCTGATGAACAAGATGTTCCGCTTTACGATCCCTGCACACAGCAACAGCA
ACCCCATCGAGGATCTTTACACGCTCGAGCTGCTGTACTCACGCCTGCGT
GAGAAAGGACTCAACGCTGATGGACCCTTCTTCCTCCCGCACTTCGTTGC
TGTCTTCCCACCCGAGTACCAACAAGTGAAGTTTGTGTTGGAGACGGCAA
CGACGATGAACAGGGACGAGATCGTCAGGATCGCGAGCATGGCGCACTCG
AACCTCCCGGAGGAAAGGAAGGCCTCGAAGGGCAAGCGGAAAACAGAGCA
TGCCTTCCTCGCGAGCGACGGTAGCAGCGGAGGAGGAGCGCCAGGCCGCG
GCAACAGGGGCCGTCGCAAGGGTAGCGGCGGCGGCCGCGGCGGCAGCAAC
CAGAAGGGGAGAGGAGGTGGTGCAAAGGCTGGTGGTGGCAAGAGCGGTGG
AGGCGGTGGCGGCGGTGCAGGCAGCATGCGCGGTCGCTGCTTCCGGTGCG
GAGAGTTGTGTCTGCCTGCAAGAAGAGCGAGTCTGTGCGATGTGAGAAGC
GCATGGGCTACGGACACTACAAGGCAAGTGCGGGTCCGAGGAGGCGGTGC
TCGTGGTGCACTTGCCGGTGGAGGGGGCGTCTGCGGACACTACGGCACTG
GACGTGGCGGAAGAGGCGCTGGCGGTGGGTGA

protein sequence of EsuBft144_5a-0001

>EsuBft144_5 ID=EsuBft144_5|Name=EsuBft144_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=393bp
MSSTADDDRTGTSGDQTSMPGQEGSDAEFARSQQQVSRLGTLVEEAMEKK
GPGNVVVDEASRGGWAAAPADQDEPLQPHGGGGAVLQQGATSGQGPRQLL
EGSWASRSGANPAGPDGVGPGVRPDREDAMGFNFPDKATVNKCMIVKEIL
SELEKIYDPGSQGSKHALMNKMFRFTIPAHSNSNPIEDLYTLELLYSRLR
EKGLNADGPFFLPHFVAVFPPEYQQVKFVLETATTMNRDEIVRIASMAHS
NLPEERKASKGKRKTEHAFLASDGSSGGGAPGRGNRGRRKGSGGGRGGSN
QKGRGGGAKAGGGKSGGGGGGGAGSMRGRCFRCGELCLPARRASLCDVRS
AWATDTTRQVRVRGGGARGALAGGGGVCGHYGTGRGGRGAGGG

mRNA from alignment at Scaffold_228:559625..561128+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft144_5a-0001 ID=EsuBft144_5a-0001|Name=EsuBft144_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1504bp|location=Sequence derived from alignment at Scaffold_228:559625..561128+ (Ectocarpus subulatus male Bft15b)
ATGAGCTCTACCGCAGATGATGATCGGACTGGTACGAGCGGGGATCAGAC
CAGCATGCCCGGGCAGGAGGGTAGTGATGCGGAGTTTGCACGTTCGCAAC
AGCAGGTTTCGCGATTGGGGACCCTGGTGGAGGAGGCGATGGAGAAGAAA
GGGCCTGGTAACGTCGTGGTGGACGAAGCCAGTAGGGGCGGCTGGGCTGC
CGCCCCCGCAGACCAAGATGAGCCCCTACAGCCGCACGGCGGAGGTGGAG
CGGTTCTTCAGCAAGGAGCGACGAGTGGACAAGGACCACGTCAACTGTTA
GAAGGCAGCTGGGCCAGCAGATCGGGAGCGAATCCTGCGGGACCAGACGG
AGTCGGCCCAGGCGTAAGACCAGACCGCGAGGACGCGATGGGGTTCAACT
TCCCAGGTGAGCAAACCACTATCCGTGGGGCCGGAGCTTTTTTGGGTGGA
TACAGCAGTGGCCACCAAAACACGTCACGGTTACGGCGCCGCGGTTTCAA
GGAGAGAGTCTCGGCCACGGGTTTGACTCGAGGAGAAAGGGGCTCGTTCA
AGCCTCCGAAACTGTAGGCTTGGACGGACAATTGATCACAACGCCGAGAG
ACATGCACCCGTCGGCGACCCATACATACCAAGCTCGGAGCTGTATAGTC
TGGGGTACACGAGCGACGAGGTCCACAGGGGCCTCCAAGCTTTCCATTTC
GTGTCCACGGCAATTGCCAGAGAAGCAGACAAGGCGACTGTGAACAAGTG
CATGATCGTCAAGGAGATCCTCTCCGAGCTAGAAAAGATCTACGACCCGG
GGTCGCAAGGCTCGAAACATGCCCTGATGAACAAGATGTTCCGCTTTACG
ATCCCTGCACACAGCAACAGCAACCCCATCGAGGATCTTTACACGCTCGA
GCTGCTGTACTCACGCCTGCGTGAGAAAGGACTCAACGCTGATGGACCCT
TCTTCCTCCCGCACTTCGTTGCTGTCTTCCCACCCGAGTACCAACAAGTG
AAGTTTGTGTTGGAGACGGCAACGACGATGAACAGGGACGAGATCGTCAG
GATCGCGAGCATGGCGCACTCGAACCTCCCGGAGGAAAGGAAGGCCTCGA
AGGGCAAGCGGAAAACAGAGCATGCCTTCCTCGCGAGCGACGGTAGCAGC
GGAGGAGGAGCGCCAGGCCGCGGCAACAGGGGCCGTCGCAAGGGTAGCGG
CGGCGGCCGCGGCGGCAGCAACCAGAAGGGGAGAGGAGGTGGTGCAAAGG
CTGGTGGTGGCAAGAGCGGTGGAGGCGGTGGCGGCGGTGCAGGCAGCATG
CGCGGTCGCTGCTTCCGGTGCGGAGAGTTGTGTCTGCCTGCAAGAAGAGC
GAGTCTGTGCGATGTGAGAAGCGCATGGGCTACGGACACTACAAGGCAAG
TGCGGGTCCGAGGAGGCGGTGCTCGTGGTGCACTTGCCGGTGGAGGGGGC
GTCTGCGGACACTACGGCACTGGACGTGGCGGAAGAGGCGCTGGCGGTGG
GTGA

Coding sequence (CDS) from alignment at Scaffold_228:559625..561128+

>EsuBft144_5a-0001 ID=EsuBft144_5a-0001|Name=EsuBft144_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1182bp|location=Sequence derived from alignment at Scaffold_228:559625..561128+ (Ectocarpus subulatus male Bft15b)
ATGAGCTCTACCGCAGATGATGATCGGACTGGTACGAGCGGGGATCAGAC
CAGCATGCCCGGGCAGGAGGGTAGTGATGCGGAGTTTGCACGTTCGCAAC
AGCAGGTTTCGCGATTGGGGACCCTGGTGGAGGAGGCGATGGAGAAGAAA
GGGCCTGGTAACGTCGTGGTGGACGAAGCCAGTAGGGGCGGCTGGGCTGC
CGCCCCCGCAGACCAAGATGAGCCCCTACAGCCGCACGGCGGAGGTGGAG
CGGTTCTTCAGCAAGGAGCGACGAGTGGACAAGGACCACGTCAACTGTTA
GAAGGCAGCTGGGCCAGCAGATCGGGAGCGAATCCTGCGGGACCAGACGG
AGTCGGCCCAGGCGTAAGACCAGACCGCGAGGACGCGATGGGGTTCAACT
TCCCAGACAAGGCGACTGTGAACAAGTGCATGATCGTCAAGGAGATCCTC
TCCGAGCTAGAAAAGATCTACGACCCGGGGTCGCAAGGCTCGAAACATGC
CCTGATGAACAAGATGTTCCGCTTTACGATCCCTGCACACAGCAACAGCA
ACCCCATCGAGGATCTTTACACGCTCGAGCTGCTGTACTCACGCCTGCGT
GAGAAAGGACTCAACGCTGATGGACCCTTCTTCCTCCCGCACTTCGTTGC
TGTCTTCCCACCCGAGTACCAACAAGTGAAGTTTGTGTTGGAGACGGCAA
CGACGATGAACAGGGACGAGATCGTCAGGATCGCGAGCATGGCGCACTCG
AACCTCCCGGAGGAAAGGAAGGCCTCGAAGGGCAAGCGGAAAACAGAGCA
TGCCTTCCTCGCGAGCGACGGTAGCAGCGGAGGAGGAGCGCCAGGCCGCG
GCAACAGGGGCCGTCGCAAGGGTAGCGGCGGCGGCCGCGGCGGCAGCAAC
CAGAAGGGGAGAGGAGGTGGTGCAAAGGCTGGTGGTGGCAAGAGCGGTGG
AGGCGGTGGCGGCGGTGCAGGCAGCATGCGCGGTCGCTGCTTCCGGTGCG
GAGAGTTGTGTCTGCCTGCAAGAAGAGCGAGTCTGTGCGATGTGAGAAGC
GCATGGGCTACGGACACTACAAGGCAAGTGCGGGTCCGAGGAGGCGGTGC
TCGTGGTGCACTTGCCGGTGGAGGGGGCGTCTGCGGACACTACGGCACTG
GACGTGGCGGAAGAGGCGCTGGCGGTGGGTGA