EsuBft144_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft144_4a-0001
Unique Name	EsuBft144_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_228	contig	Scaffold_228:583848..588176 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft144_4
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	375
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft144_4a	EsuBft144_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_228 583848..588176 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft144_4a-0001-exon	agat-exon-8996	Ectocarpus subulatus male Bft15b	exon	Scaffold_228 583848..584142 +
EsuBft144_4a-0001-exon	EsuBft144_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_228 584715..588176 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft144_4a-0001-exon	agat-five_prime_utr-2615	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_228 583848..584007 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft144_4a-0001-cds	EsuBft144_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_228 584008..584142 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft144_4a-0001-exon	agat-three_prime_utr-3974	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_228 585030..588176 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft144_4a-0001	EsuBft144_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_228 584008..585029 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_228:583848..588176+
coding sequence from alignment at Scaffold_228:583848..588176+

spliced messenger RNA

>EsuBft144_4a-0001 ID=EsuBft144_4a-0001|Name=EsuBft144_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3757bp|location=Sequence derived from alignment at Scaffold_228:583848..588176+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGCGGGCGGGGGGGCGAGTGCGCTCGCGAGGTCCAACGCCAAAGAGGAGG
CGAGGAGGGAGGCCACCATTTGGCAGGCCAAATATTATCAGACACTCTAG
GTACTTCGGGGGCAGCGGGGGCCGGAGCCCGGGCCACAGAAGGAGGACCT
GCAGGGTGTAATGGGCGATATCGTCCACGTCACGGGCAACGTCCTCGCTC
AGATGCGTGCGTTGTTGTCTTTCGACGTCAAGAGCTTCCGGCCCGTGGGG
GTTGCCCGCACGTTGTCTATTGCAGACAACTTCGACGTAATGATTGCGGT
GATGCGGCTGTTGAAGTTTGGTCTAGATTCGTCCACGACCGCGGGTGTGC
AATCGTTGCGGCGGTTGGAACCCATAGCCACAGTCATGGCGGACGCGCGC
TCCAGGTTTCGGACTACTCTCGTGCGGAATAGTGATGTGTTTCCGGACGA
GTACCAGCGGGCGGCACTGCCAAGGTTGCTGAACGAGGACTTCAAATTGT
CGACAACGGCGATCATCACCTGGATGTACCCCTTCACGAAGATGCATTAT
CCGCCGGATGCGTTCGACGGCCACACCTTGCCGCCGGTGCCCGAGTTCCC
CAACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTGC
AAACGGGCCACTACTTTCGATATGATCTGTCTGTGGAAGAGCAAGCTTGC
TTTGTGGGGTTGCGCAAATCGGTCCAGGGGGTTAATGATGTCAGCATCAA
CGTGTTAGAGCTCCTTGGCATGGTCATCGGGGCGTGGGTGTTGGTATTGG
ATCGAAGTCACCAGCCTGTGGAGGCGGGTGATTGTGTGCGACTTCGAGAA
GACAACGAAGCAGCGACGGCGTGGATTGAGCATTGTCGGGGGGGCCTTGA
GCCTCGATCGGGGGCGCTGGTGCGCCTACTGGGGGCGCTGGAGGTAGCCA
GCGGGTGGCATTTCCACGCGACCCATGTTCCCGGCATACTCAACTCGCTT
GCTGATGGTATCTCACGTTGGAATACTAACGATGTTCATGATAACCTGTG
CGCTGCCTCCCCTCATGTGGCGTGGCAGATCGTGGAGTTAGGCCCGACGG
AGCGCGAGTTGTGCTCCACCGTGCTGGCTTCGAGCTCGTCCGGCACGCAC
TTGCGCCGTCGTCTGAACGAACTTTCCTGGGATTTATTGGAGCGTGGGTG
AAGTTTCGAGAGAACGTTGTGGGGAGACCGGCGTTTATGGTGCCGTCGTC
TCCATCGCCGGACATTGTTTCGCAATTGTTGGAGTACGTGGCATACGCGT
TCACAGTGTTGGGCTTGAGGCAGACGACGATAGCTGGTCATGTCTGCTGT
AATTTTTTTTCACCGCTTGTCGTATGCGATGGAAGTTGATATATGTCATT
CTTTCATCAAGCAGGCGCCTAAAGGCGTGGCGCGAGGGCATGCGGGTGTT
GGTGCGCAGCAACGGGTGCGACGTCCGGTGTCGTGGTCGATGCTGAAGGA
AAGGGGGCGTCTGGTGCCACAGTGGGGCACGGGTGGGCGCGTGTTGTTTC
TGGCGTTGAGAGCGTCATTTTTTTCTTGATGCGGGCATGCGAAATGTTCG
CTGGGCCCTCGGTTGGCCATGGATTCTTGTCATGGGTTGCGTCGGGGGGA
CTTGGCGTTTTTTTTTGGGTTCTCGCCAGTTGTCTCCTGAACGGAGGGGA
GAGGCCGACAGAGTCGAGGTGCGGTTTCGGTCGTCGAAAGGCGACCAGTT
TCGGAAGGGTGCCGTGTGTACGCAGGCGAGGCCGGGGGCTCCCCAGTCTG
TGGAGTGTGGGGAGGGTGAGGTCGATGTGATGATTGAACTCCTGTCATGC
TACCCTGTTCTCCCTTCGTCTGCTCCGTTAGTCGCGTTCGGAACCGGGGA
GGGGCGATAGTCCGTGTGGACTCGTCGTCACGCGACGGAATCGCTGCGGC
AAGTCGGGTCGTTAGCGGGTCTGCCGTCGTCAGAGTACGCGTTGCATTCC
CTTCGGATTGGGGGCGCCACGTACTTGGCAGCGCGGGGAGCGTCGCCAGA
AGTTCTGAGACGAGAGGGGAGATGGACTGGGGAATCGGGGAATCGGCCGT
ACGTAGGGAACCATGGAAATGATGCAGAGTTGGTTTCTAGTACATTGGCG
TCGGAGGGTGATACAGAGAGGCAACCGGGACAGGGTACAGAGTGGGGTGA
CGCAGTCCCTGAGGCTGGTGAGGGCGAGCCGTAAAAGGAAGGGGTGGAGT
GTATGCGATCAGGGTTTATTGGTCGGTACAAGAGTGGGAACCACGGTAGG
GGGGAAGAGAGAGTACAGATCAGTATGGTAAACCAGTCCGCGGTTAGGTT
GGGGGCAGGCATGACTTTGAGAGTATGCCTGATGGTGCGGTGACTGGTTT
ATACTGATGGTGTTGTGGACGGGGATAGGTTGAGATCCCCGAGTTCCGCT
CTTCTCTCCCCCCCCTGTTCAAGCGTGGGGGGGTACGACAAATTCATGCA
ATTTCGAAAGCAACGAACAAAGCAGAAGATTGCAGAGACAGAGGCGTTGA
AATCTGAGTTTTGTGAGGAACGGAAGATGAAATATCTGTTGGCCAATCAG
AGAGCAGCAACATGGAGTCAGCATGAAGTGTCTGAAACCTGACCAGAAGA
GTAGACTTGGGAGCACTTGTTGGTCTGCCCCAAGGAAGCACGAGGGAGGC
TGCTGCAGCCAAAAGATATTTCGGAGGCGATCTATTTCTTTCCCACCCAC
CCACCCTTTAGCTTTTGGGGGTGTCAGTGGTAGGGCAAGGACGGATCGCC
AGCAGTAGTGAATGAGGAAGGTGTCGTCGTTTGGCGATACTGCTGATGGG
GCGAGGGTTTCTTGGGTAGATGGTCCTTGCCTGGGTGTGTCTGTCGCGTT
AGAGATGCTGGCGGTACTCTCAGTGCGGGTGAGAGCGCCTAAGTTGCTGT
GCCACGAGCGACGAGTGCACAATGACTGGATGATTGGTTATGGTCGACAG
GGTCGGCTGTAGCCGTGGGCCGGCGGTCGGGGGGCGGGTGCAAACCCAAC
GTGTGGGTTCGTGGGGTACCGCGTGTGTGCGACCGTTGACGAGCTTGACG
AGGTAGCGCGACTAAATAGACATGGGCATGCAGTGGTGTAGTTCACGGTG
CATCACAATCAATGTGATATGTGTGCGGTATATTGAGGTCGGTATATCGG
AACATGCGTGCAATTTGGAGAGAAGAGAGTGTGGGGAGCACCCGACATCC
CAGGGGGAGTGAGCGCGCAAATGTAAGTTGTTGTTAACAGCTGGCGCTGA
GTGAGAGGGGGATTAGTGCGGTGCTAGGAGTATTTCCAGTCCATGCTCAT
GTACATGAAATACAACTGTGTGGGGCTTTGAGGTGCCGGGCAATTTTTGT
TTCTGTTTTTTGCATTTCCTTTCTGTGAAAATGTAGCTCGGCATTCTCTA
TGCATACGTATGTTTCGGAGTCTGTGGAGGACAGGGGGCAGGCATGACTT
TGAGAGT

protein sequence of EsuBft144_4a-0001

>EsuBft144_4 ID=EsuBft144_4|Name=EsuBft144_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=150bp
MGDIVHVTGNVLAQMRALLSFDVKSFRPVGVARTLSIADNFDVMIAVMRL
LKFGLDSSTTAGVQSLRRLEPIATVMADARSRFRTTLVRNSDVFPDEYQR
AALPRLLNEDFKLSTTAIITWMYPFTKMHYPPDAFDGHTLPPVPEFPNXX

mRNA from alignment at Scaffold_228:583848..588176+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft144_4a-0001 ID=EsuBft144_4a-0001|Name=EsuBft144_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4329bp|location=Sequence derived from alignment at Scaffold_228:583848..588176+ (Ectocarpus subulatus male Bft15b)
CGCGGGCGGGGGGGCGAGTGCGCTCGCGAGGTCCAACGCCAAAGAGGAGG
CGAGGAGGGAGGCCACCATTTGGCAGGCCAAATATTATCAGACACTCTAG
GTACTTCGGGGGCAGCGGGGGCCGGAGCCCGGGCCACAGAAGGAGGACCT
GCAGGGTGTAATGGGCGATATCGTCCACGTCACGGGCAACGTCCTCGCTC
AGATGCGTGCGTTGTTGTCTTTCGACGTCAAGAGCTTCCGGCCCGTGGGG
GTTGCCCGCACGTTGTCTATTGCAGACAACTTCGACGTAATGATTGTGTG
NACGCCAAAGAGGAGGCGAGGAGGGAGGCCACCATTTGGCAGGCCAAATA
TTATCAGACACTCTAGGTACTTCGGGGGCAGCGGGGGCCGGAGCCCNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNTTTTTTTTTTTTTTTCTCCCATCATTGGACTCTGTCGTCTGCC
CCTCTGGCCCCTATCCTCCACTTCTACCAGCCAGACGATCCAACCGGGGT
CACATAGGAGGGGGGGGCTGGGCCCCCTCCTGCGGTTCCTACCTGAGGTA
TTTTTATCGCGAGAAGGGTACAGCAATACCTTCCCTCGCGACTTACCAAG
TCGATTATGGCTTTCTAACAAACGAGCTTTGCAGCGCGTCGCTTTCATCC
TAGACCAGGATATATTTAGTGAAAAAAAAACTCACTCTGCCGGGACTCGA
ACCCATGACCTGGCCCTTAGCAGGCTGCGAGGCTACCCACTAGACCACCG
GGGCAACCGTGGGTGAGGCGGTGATGCGGCTGTTGAAGTTTGGTCTAGAT
TCGTCCACGACCGCGGGTGTGCAATCGTTGCGGCGGTTGGAACCCATAGC
CACAGTCATGGCGGACGCGCGCTCCAGGTTTCGGACTACTCTCGTGCGGA
ATAGTGATGTGTTTCCGGACGAGTACCAGCGGGCGGCACTGCCAAGGTTG
CTGAACGAGGACTTCAAATTGTCGACAACGGCGATCATCACCTGGATGTA
CCCCTTCACGAAGATGCATTATCCGCCGGATGCGTTCGACGGCCACACCT
TGCCGCCGGTGCCCGAGTTCCCCAACATNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNGTTTGCAAACGGGCCACTACTTTCGATATGATCT
GTCTGTGGAAGAGCAAGCTTGCTTTGTGGGGTTGCGCAAATCGGTCCAGG
GGGTTAATGATGTCAGCATCAACGTGTTAGAGCTCCTTGGCATGGTCATC
GGGGCGTGGGTGTTGGTATTGGATCGAAGTCACCAGCCTGTGGAGGCGGG
TGATTGTGTGCGACTTCGAGAAGACAACGAAGCAGCGACGGCGTGGATTG
AGCATTGTCGGGGGGGCCTTGAGCCTCGATCGGGGGCGCTGGTGCGCCTA
CTGGGGGCGCTGGAGGTAGCCAGCGGGTGGCATTTCCACGCGACCCATGT
TCCCGGCATACTCAACTCGCTTGCTGATGGTATCTCACGTTGGAATACTA
ACGATGTTCATGATAACCTGTGCGCTGCCTCCCCTCATGTGGCGTGGCAG
ATCGTGGAGTTAGGCCCGACGGAGCGCGAGTTGTGCTCCACCGTGCTGGC
TTCGAGCTCGTCCGGCACGCACTTGCGCCGTCGTCTGAACGAACTTTCCT
GGGATTTATTGGAGCGTGGGTGAAGTTTCGAGAGAACGTTGTGGGGAGAC
CGGCGTTTATGGTGCCGTCGTCTCCATCGCCGGACATTGTTTCGCAATTG
TTGGAGTACGTGGCATACGCGTTCACAGTGTTGGGCTTGAGGCAGACGAC
GATAGCTGGTCATGTCTGCTGTAATTTTTTTTCACCGCTTGTCGTATGCG
ATGGAAGTTGATATATGTCATTCTTTCATCAAGCAGGCGCCTAAAGGCGT
GGCGCGAGGGCATGCGGGTGTTGGTGCGCAGCAACGGGTGCGACGTCCGG
TGTCGTGGTCGATGCTGAAGGAAAGGGGGCGTCTGGTGCCACAGTGGGGC
ACGGGTGGGCGCGTGTTGTTTCTGGCGTTGAGAGCGTCATTTTTTTCTTG
ATGCGGGCATGCGAAATGTTCGCTGGGCCCTCGGTTGGCCATGGATTCTT
GTCATGGGTTGCGTCGGGGGGACTTGGCGTTTTTTTTTGGGTTCTCGCCA
GTTGTCTCCTGAACGGAGGGGAGAGGCCGACAGAGTCGAGGTGCGGTTTC
GGTCGTCGAAAGGCGACCAGTTTCGGAAGGGTGCCGTGTGTACGCAGGCG
AGGCCGGGGGCTCCCCAGTCTGTGGAGTGTGGGGAGGGTGAGGTCGATGT
GATGATTGAACTCCTGTCATGCTACCCTGTTCTCCCTTCGTCTGCTCCGT
TAGTCGCGTTCGGAACCGGGGAGGGGCGATAGTCCGTGTGGACTCGTCGT
CACGCGACGGAATCGCTGCGGCAAGTCGGGTCGTTAGCGGGTCTGCCGTC
GTCAGAGTACGCGTTGCATTCCCTTCGGATTGGGGGCGCCACGTACTTGG
CAGCGCGGGGAGCGTCGCCAGAAGTTCTGAGACGAGAGGGGAGATGGACT
GGGGAATCGGGGAATCGGCCGTACGTAGGGAACCATGGAAATGATGCAGA
GTTGGTTTCTAGTACATTGGCGTCGGAGGGTGATACAGAGAGGCAACCGG
GACAGGGTACAGAGTGGGGTGACGCAGTCCCTGAGGCTGGTGAGGGCGAG
CCGTAAAAGGAAGGGGTGGAGTGTATGCGATCAGGGTTTATTGGTCGGTA
CAAGAGTGGGAACCACGGTAGGGGGGAAGAGAGAGTACAGATCAGTATGG
TAAACCAGTCCGCGGTTAGGTTGGGGGCAGGCATGACTTTGAGAGTATGC
CTGATGGTGCGGTGACTGGTTTATACTGATGGTGTTGTGGACGGGGATAG
GTTGAGATCCCCGAGTTCCGCTCTTCTCTCCCCCCCCTGTTCAAGCGTGG
GGGGGTACGACAAATTCATGCAATTTCGAAAGCAACGAACAAAGCAGAAG
ATTGCAGAGACAGAGGCGTTGAAATCTGAGTTTTGTGAGGAACGGAAGAT
GAAATATCTGTTGGCCAATCAGAGAGCAGCAACATGGAGTCAGCATGAAG
TGTCTGAAACCTGACCAGAAGAGTAGACTTGGGAGCACTTGTTGGTCTGC
CCCAAGGAAGCACGAGGGAGGCTGCTGCAGCCAAAAGATATTTCGGAGGC
GATCTATTTCTTTCCCACCCACCCACCCTTTAGCTTTTGGGGGTGTCAGT
GGTAGGGCAAGGACGGATCGCCAGCAGTAGTGAATGAGGAAGGTGTCGTC
GTTTGGCGATACTGCTGATGGGGCGAGGGTTTCTTGGGTAGATGGTCCTT
GCCTGGGTGTGTCTGTCGCGTTAGAGATGCTGGCGGTACTCTCAGTGCGG
GTGAGAGCGCCTAAGTTGCTGTGCCACGAGCGACGAGTGCACAATGACTG
GATGATTGGTTATGGTCGACAGGGTCGGCTGTAGCCGTGGGCCGGCGGTC
GGGGGGCGGGTGCAAACCCAACGTGTGGGTTCGTGGGGTACCGCGTGTGT
GCGACCGTTGACGAGCTTGACGAGGTAGCGCGACTAAATAGACATGGGCA
TGCAGTGGTGTAGTTCACGGTGCATCACAATCAATGTGATATGTGTGCGG
TATATTGAGGTCGGTATATCGGAACATGCGTGCAATTTGGAGAGAAGAGA
GTGTGGGGAGCACCCGACATCCCAGGGGGAGTGAGCGCGCAAATGTAAGT
TGTTGTTAACAGCTGGCGCTGAGTGAGAGGGGGATTAGTGCGGTGCTAGG
AGTATTTCCAGTCCATGCTCATGTACATGAAATACAACTGTGTGGGGCTT
TGAGGTGCCGGGCAATTTTTGTTTCTGTTTTTTGCATTTCCTTTCTGTGA
AAATGTAGCTCGGCATTCTCTATGCATACGTATGTTTCGGAGTCTGTGGA
GGACAGGGGGCAGGCATGACTTTGAGAGT

Coding sequence (CDS) from alignment at Scaffold_228:583848..588176+

>EsuBft144_4a-0001 ID=EsuBft144_4a-0001|Name=EsuBft144_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=450bp|location=Sequence derived from alignment at Scaffold_228:583848..588176+ (Ectocarpus subulatus male Bft15b)
ATGGGCGATATCGTCCACGTCACGGGCAACGTCCTCGCTCAGATGCGTGC
GTTGTTGTCTTTCGACGTCAAGAGCTTCCGGCCCGTGGGGGTTGCCCGCA
CGTTGTCTATTGCAGACAACTTCGACGTAATGATTGCGGTGATGCGGCTG
TTGAAGTTTGGTCTAGATTCGTCCACGACCGCGGGTGTGCAATCGTTGCG
GCGGTTGGAACCCATAGCCACAGTCATGGCGGACGCGCGCTCCAGGTTTC
GGACTACTCTCGTGCGGAATAGTGATGTGTTTCCGGACGAGTACCAGCGG
GCGGCACTGCCAAGGTTGCTGAACGAGGACTTCAAATTGTCGACAACGGC
GATCATCACCTGGATGTACCCCTTCACGAAGATGCATTATCCGCCGGATG
CGTTCGACGGCCACACCTTGCCGCCGGTGCCCGAGTTCCCCAACATNNNN