Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7G8L4 |
| ProteomeId | EsuBft144_24 |
| Protein domains | PTHR22847 |
| Protein domains | IPR017986 |
| Protein domains | IPR001680 |
| Protein domains | IPR015943 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | uncharacterized wd repeat-containing protein alr2800 os:nostoc (strain pcc 7120 utex 2576) gn:a [Automatic annotation] |
| Nb exon | 6 |
| Max annot lvl | 2759|Eukaryota |
| Length | 1376 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.97e-127 |
| EggNOG OGs | 28N03@1|root,2S80F@2759|Eukaryota |
| Ec32 ortholog description | Quinonprotein alcohol dehydrogenase-like superfamily |
| Ec32 ortholog | Ec-00_010930.2 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| KEGG ko | ko:K14963 |
| KEGG Pathway | ko04934,map04934 |
| Description | WD40 repeats |
| COG category | S |
| BRITE | ko00000,ko00001,ko03036 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0031227 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft144_24a-0001 ID=EsuBft144_24a-0001|Name=EsuBft144_24a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1376bp|location=Sequence derived from alignment at Scaffold_228:398851..402944- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TGCCTACTTCTAGCGGGCGGCATGGACGGGAGTAGTCACCTCGTCTCCAT
CGATGGCGGCCACGGTGGTGATGCCGGTGATGGTAGCGACGGTGATGATG
GCGAGGAGACGAACGGGGTGGCGTTGTTGGCCTCCATGAAGAACCACGCC
AAATACGTCGTCGTTTGCAGGTGGGCACCTGACGGCAGAGCTTTCGTGAC
GGCCTCCCACGACAAGGTGGTGACCCTGTACACCTTGAGGGGCGGGGGGG
ACGGGACGGGGCAGGGCGGCGTCGGCGGCACGGGTTTTGAGCAGGCGACC
CAGCTGTATTTTCCCGAGGCGGTAGAGAGCGTGGAGTTCGTAAGGGGAGA
AGGCGGTGCGCTGGAGCTGGTGGTGTCGGCCAGGGCGCAGCCGCACCTCA
CGTACGTCAACATCGAGACCCTCCAACAGCGCCGAGTGAGCCTGAACGAG
AAGGAGTGGGATACCCACGTGTCCTTCACGGTGATGTCCATGGCGGCCTC
TGGGGACGGGAAGTACCTCCTCGCCGCCACCGACAAAAGCAGAAACATCC
TCTGGCGGGCGGGAAGCAACGCCCGGGTCCGCACCCTGATGGGCCACACG
ACGGACGACTACTTCCAGCCGCGGGTGCAGTGGGACCCCTCCGGACTGTT
CTCCTACTGCAACAGCTCTGGGGATCACGACGTTCACGTTCACTGCCTAG
CCTCCGGCCGCGCCGTGGAGCAGCTCAAGGGGCACCGTGCCGTCATACGT
GACATCCACCACGACCCTTCTAGAAGAGTTCTCGTTACGGCTTCCTACGA
CAAGACTGTCAAAGTCTGGGGGGAGAGATGAGGGGTCGGCTCTAGCGAGA
ACGGCAGTTATCTTGGGGGGGGGAATATCGATGAAGACTGCTCAAGATGG
CGGAAACTTTATCGTACGTGCACGCCGGATGTCGCCTTAGCTACCGAAGA
TTCGCTTTGGGGTCACGGGGCTCGTGTGCAAGGAATAATAAGAACACCTT
TCGACATGTTCATGTGTGGACTCGTTGTAAGATTGTTTTCACCCCGAAGT
TGTGCGAGCCAAGAGAAACCACTGAGACACAATGGCTACGGTTCTTTCCC
TCCCCCGGAATACTCACGACCCCTGTGCTAGATAGGGTGGGTAATGAGCC
GCGGGTGACGACTCAATAACTCGCAGTAGTCTATCTGCGATGCTGTGCGA
TGTTGTTGTTCCGATCATGGAAGTGCAGCAGAAGGAGGAGCCCCGCTCAC
AACAGAGAGAAAAGGAGCGCGCAGGATTGGTTGGTGGTTTGGAGTGTTGG
GAGTGTGGGATATGCAGGCTTGTGCGACGAGGAAAATGAGCAGCGCTTGT
TTGTACACATAGACTACATGTTGCAT back to topprotein sequence of EsuBft144_24a-0001 >EsuBft144_24 ID=EsuBft144_24|Name=EsuBft144_24a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=269bp
MDGSSHLVSIDGGHGGDAGDGSDGDDGEETNGVALLASMKNHAKYVVVCR
WAPDGRAFVTASHDKVVTLYTLRGGGDGTGQGGVGGTGFEQATQLYFPEA
VESVEFVRGEGGALELVVSARAQPHLTYVNIETLQQRRVSLNEKEWDTHV
SFTVMSMAASGDGKYLLAATDKSRNILWRAGSNARVRTLMGHTTDDYFQP
RVQWDPSGLFSYCNSSGDHDVHVHCLASGRAVEQLKGHRAVIRDIHHDPS
RRVLVTASYDKTVKVWGER back to topmRNA from alignment at Scaffold_228:398851..402944- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft144_24a-0001 ID=EsuBft144_24a-0001|Name=EsuBft144_24a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4094bp|location=Sequence derived from alignment at Scaffold_228:398851..402944- (Ectocarpus subulatus male Bft15b)
TGCCTACTTCTAGCGGGCGGCATGGACGGGAGTAGTCACCTCGTCTCCAT
CGATGGCGGCCACGGTGGTGATGCCGGTGATGGTAGCGACGGTGATGATG
GCGAGGAGACGAACGGGGTGGCGTTGTTGGCCTCCATGAAGAACCACGCC
AAATACGTCGTCGTTTGCAGGTACAGTACTTCCCGTAGAACGTTTGGGGA
AGAGCGGCAATCAGGTGTTGCCGCCGTGGCATAAGATGCGCGTTTTTCTG
TGTTTCACTAGCTTCGAAGGGAAGCGCTGTAGCCAACGGGGTAAATAACC
GCCGCCACCCTGCTTACCTCCTAAAGGGGTTCCTCGGGGTTGTAGGAAAT
TTCCAGGAACACTCCCCGTCAACCATTCCTTTCGACCAAGTCATGAGAAC
CCCACTCGTTGTGTTGGGATTATGTGTTTTTGGCCTCCCTTCGAGTACTT
GTGTGTTTGTCTCTCGAGTATGCTCGTACCTCGCCGTTTGCCTGTTTGTG
TTGAGGTTCACAACATGCCTGACACATGCTGCAGCACGCAAACGATCATT
CTTCCACCAGCTTACCATCCGTGTTAAAGATATCATCGAAGAATCAGGAC
CGACAAGTGACGGCGCCAGCAACAGGTTTAGCCGCCCACGTGCGAGCCTC
CCCGTGCCCTCTCCACCACCTAATTTTCCCCAACAACACCACCCCCACTT
CTCAGCCCCCCCGCTTCGCCTCTATGCCCCCCCCCCCCCCCCCCCCNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCGTCA
TTTTCCATCTCGCCCGCGCCCCGAGCTCTGCATTCTAATAATTTCTTTTC
CTCTGCGCCCCATATAACTTTTTGCAACATCCCGGCGCCTAAAATCTCCC
CGCCCCCACCCCCCCTATCCTAGGTGGGCACCTGACGGCAGAGCTTTCGT
GACGGCCTCCCACGACAAGGTGGTGACCCTGTACACCTTGAGGGGCGGGG
GGGACGGGACGGGGCAGGGCGGCGTCGGCGGCACGGGTTTTGAGCAGGTG
CACGTCGTGGGTGGGGGTGGGGAACGACACACGACAGCGGTACTGAGTAT
TATTCGGTCATTCGAGTGTTGAATATTTTGTCGTTGATTTCTCTCTGTCT
CTGTCTGTGTCTCTTTCGCTTTCTCCTTCTCTCGATTCGGTTCGCAGCGG
GCGTGACGCGACACCGGAGAGATACAACCTTGCTTGCCGAAATGTGAAAC
GGATGGTTAGCGGGGATGGCCAACCGATCAACCTCATGGCATATCTATTT
GGCTAGAGCAAAACGCAAGGGTGATGGTCAGCTTCGTGTGGCTAATCCTT
GTGGAACGTAGCCCGAGCTGGCGAAAAAACGGCATATCGCTCCGTCCCGG
CATTGTAGGGATGCGAGGTCGACATGGCTTACCGACTACGGCGTGCGTGT
ACATGAGTGCACCACCTCCAAATGCCTTGTGCAGGCGACCCAGCTGTATT
TTCCCGAGGCGGTAGAGAGCGTGGAGTTCGTAAGGGGAGAAGGCGGTGCG
CTGGAGCTGGTGGTGTCGGCCAGGGCGCAGCCGCACCTCACGTACGTCAA
CATCGAGACCCTCCAACAGCGCCGAGTGAGTGGTTACAGCGTAGCGCACG
TGTATGTGTGTGCGGATACCACTCAATCTTTTTTGGTCCTGTGGTAGTGC
TTGGCGTCTGCTGTCGCTGCCCTCGGAGCAGACGTTCTCGTGGTGGTGGC
GGGGGGGGGGGCGCTGTCATCTCCAAGGGGTAGTCGAAAGGGTTGTCACG
AAACCCGGACCCGCTTTTTTTTCCTCAGGCGTTTTCTCTGGATCCCGCCT
ATACGTGTGTTGAAAACCCAAACCTACAAAGGTGAGCCTGAACGAGAAGG
AGTGGGATACCCACGTGTCCTTCACGGTGATGTCCATGGCGGCCTCTGGG
GACGGGAAGTACCTCCTCGCCGCCACCGACAAAAGCAGGTACAACTACCA
CAGCATGATTCTCGAGCCTTTTTTCACCACCAGTCCGTATGGCGAGAACT
TTGCGATCTGAATTTTGGCGGCCATGGACAAGCCAGTCAGAGTGGTACGC
AGAAACCTTCGGCGAAGATGGATTCAAGAGTATCGGAAGTGATCTGTGTA
CCAGGCAATTGTTTGTGTTACTTGCGTTGTATCTCACAGAGAGAGAGAGA
GAGTGAGGGGAGAGAGAGAGAGACGGACAAAAGGAAGCGCTTGTGGCATG
TTTTTCCTTGTGGCATCTATCACCCACACAACAACACACTATCTGATTGT
ACCGGTCTACAAGGCAGGGCGGGTCTTTGCTGTAAAACTGCCGTTGAAGA
AAAAGATGGGTACATCTATGTCATTCTGCTACTAGCCAGGTCATGCTTGT
ACAGTGTGGCGGGTTCTCACTCAGGATGTGAACCAAATTTTGGTCGTTGT
GAGAGACTGGCGCTTTTTGTTGTTGTTGCTGCTGCTGCTGGTGTTACCGC
CTCTGCTATGACACATTTGCCTGACCGTTTCGCCTTCAGTTGATAACATC
CGCCTTTATTTTGGTCCCCGTCCCTCGTAAGAATAATTACTTCTCGCGGC
TGCCGCAAAATGCAAGCAGCAAGACAAGGGCAAGAGCTGCCTGCTTGTAA
CCAGAAGCGCAAGTTTTTTTTTTGTGTGATCCCGTCGGGGCTGACGTCAC
TCTTTCGGGTCCGCAGATTACCGCGGCCGTTGCCGACCAATGAATGCACT
TCTGGTCATACGTCATACGTGCCACATGAGACAGGGATTCGCGTGTTGTC
ATCAGTGGTCAGTCTGTGTGATTGTGAGCGATCGACTCAGGTTTTTCCTC
TCTGGAAACGTTTTTCCGGCGATCGACGCGCGTGACGCTTGTTTCATGCT
TCTTCGCGGCTACACCCACTCATTCTGCCTCTCCCAGAAACATCCTCTGG
CGGGCGGGAAGCAACGCCCGGGTCCGCACCCTGATGGGCCACACGACGGA
CGACTACTTCCAGCCGCGGGTGCAGTGGGACCCCTCCGGACTGTTCTCCT
ACTGCAACAGCTCTGGGGATCACGACGTTCACGTTCACTGCCTAGCCTCC
GGGTGGGTTGTGGTGTTTTCTTTGACAAGTCCTACTAAATATTGCAACAG
ACGCTTTCAATTTTTCTCCGAGTTTAGTTTTAGCGTGTTATGTGCTTTCA
CCGTCCCGTCAACAGGTTCCCCTCGTCGAACCGCAGGTTACTGTTGCCCT
GGCTGGCGCTTGCTCAATTTTCCTCTTGGCTGTGTAAGTTGCTGTTGAGT
TCAAAACCGTTTCTTACTTTTCCCGCTACCGCCGTCCGGCCTGGCATCGT
TCCATTCGATTCTTCGCGTCAACAGCCGCGCCGTGGAGCAGCTCAAGGGG
CACCGTGCCGTCATACGTGACATCCACCACGACCCTTCTAGAAGAGTTCT
CGTTACGGCTTCCTACGACAAGACTGTCAAAGTCTGGGGGGAGAGATGAG
GGGTCGGCTCTAGCGAGAACGGCAGTTATCTTGGGGGGGGGAATATCGAT
GAAGACTGCTCAAGATGGCGGAAACTTTATCGTACGTGCACGCCGGATGT
CGCCTTAGCTACCGAAGATTCGCTTTGGGGTCACGGGGCTCGTGTGCAAG
GAATAATAAGAACACCTTTCGACATGTTCATGTGTGGACTCGTTGTAAGA
TTGTTTTCACCCCGAAGTTGTGCGAGCCAAGAGAAACCACTGAGACACAA
TGGCTACGGTTCTTTCCCTCCCCCGGAATACTCACGACCCCTGTGCTAGA
TAGGGTGGGTAATGAGCCGCGGGTGACGACTCAATAACTCGCAGTAGTCT
ATCTGCGATGCTGTGCGATGTTGTTGTTCCGATCATGGAAGTGCAGCAGA
AGGAGGAGCCCCGCTCACAACAGAGAGAAAAGGAGCGCGCAGGATTGGTT
GGTGGTTTGGAGTGTTGGGAGTGTGGGATATGCAGGCTTGTGCGACGAGG
AAAATGAGCAGCGCTTGTTTGTACACATAGACTACATGTTGCAT back to topCoding sequence (CDS) from alignment at Scaffold_228:398851..402944- >EsuBft144_24a-0001 ID=EsuBft144_24a-0001|Name=EsuBft144_24a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=810bp|location=Sequence derived from alignment at Scaffold_228:398851..402944- (Ectocarpus subulatus male Bft15b)
ATGGACGGGAGTAGTCACCTCGTCTCCATCGATGGCGGCCACGGTGGTGA
TGCCGGTGATGGTAGCGACGGTGATGATGGCGAGGAGACGAACGGGGTGG
CGTTGTTGGCCTCCATGAAGAACCACGCCAAATACGTCGTCGTTTGCAGG
TGGGCACCTGACGGCAGAGCTTTCGTGACGGCCTCCCACGACAAGGTGGT
GACCCTGTACACCTTGAGGGGCGGGGGGGACGGGACGGGGCAGGGCGGCG
TCGGCGGCACGGGTTTTGAGCAGGCGACCCAGCTGTATTTTCCCGAGGCG
GTAGAGAGCGTGGAGTTCGTAAGGGGAGAAGGCGGTGCGCTGGAGCTGGT
GGTGTCGGCCAGGGCGCAGCCGCACCTCACGTACGTCAACATCGAGACCC
TCCAACAGCGCCGAGTGAGCCTGAACGAGAAGGAGTGGGATACCCACGTG
TCCTTCACGGTGATGTCCATGGCGGCCTCTGGGGACGGGAAGTACCTCCT
CGCCGCCACCGACAAAAGCAGAAACATCCTCTGGCGGGCGGGAAGCAACG
CCCGGGTCCGCACCCTGATGGGCCACACGACGGACGACTACTTCCAGCCG
CGGGTGCAGTGGGACCCCTCCGGACTGTTCTCCTACTGCAACAGCTCTGG
GGATCACGACGTTCACGTTCACTGCCTAGCCTCCGGCCGCGCCGTGGAGC
AGCTCAAGGGGCACCGTGCCGTCATACGTGACATCCACCACGACCCTTCT
AGAAGAGTTCTCGTTACGGCTTCCTACGACAAGACTGTCAAAGTCTGGGG
GGAGAGATGA back to top
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