Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft144_16 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 7 |
| Length | 79 |
| Hectar predicted targeting category | other localisation |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft144_16a-0001 ID=EsuBft144_16a-0001|Name=EsuBft144_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=796bp|location=Sequence derived from alignment at Scaffold_228:471231..475464- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GCTTGCTTGTTGCTCCGGTGGAACAATCCCCCCACCCCCGAACATGCGGC
AAGGCATATCGATAGGATGCGCCATCTATATAGGTATCAGCGGCGGCATC
GGCGGCGGCAGCGGCGTCCACCGTTCGCGAGCGGCGAGTTACGGGGGTAG
TGACACGATCCGCAGAGATAAAACCGGCCAGAGAACACGACACAGGCGCT
CCCACAGTAGAGACTCCCAGCCCAGCCTGCGGAGAAGAAGCCTGTCCAGG
ACCCCGACGCAGCGGCCCATTTGTCCCCCGGAAGGAATCTTCTCGCTAGA
CGCGGGAGGCCTCGGCGCCTGGGAAACCCTCAAGGGAGCGGCGGGAGTGA
AATCCCCTGGGGGCTGGAGCTCGGGGACATCGGAGACTGATTCTACTGAC
GCAGAGGCGCCGCCCGAGGTTGAGACCGGAGCCGACATTGAGTTCGTGCT
CGTTGTGGCAGGGGGGCACGACCTCAACGACGAGTGTATCTTCGAGGCAA
TGACCCCGCCGGAGTACGGTCTGGAGGAGTTCGTGGATGGTGTGGAGGCG
TTGGACATGCCGGACGATGTCATCAACAAGGTGCACGGCGACGCGAGCGA
GACTCCCGCGGGCGCCGGCGGCGGCATCGCCGGAGGCAGCAACGGGCCCA
AGAAGACGGCGAGCGTGTCCATCCCGCCCTCCGTCGCCGGCGGCGGTGGC
GGCGGCGGCGGCGGCGTCGCCGGTTCGAGCGCCGCGAACGCCTTCGAGAA
TTACGCGCACGTCAACGAGGCCCACTCAACCTCCAAGAAGAAGTAA back to topprotein sequence of EsuBft144_16a-0001 >EsuBft144_16 ID=EsuBft144_16|Name=EsuBft144_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=250bp
MRQGISIGCAIYIGISGGIGGGSGVHRSRAASYGGSDTIRRDKTGQRTRH
RRSHSRDSQPSLRRRSLSRTPTQRPICPPEGIFSLDAGGLGAWETLKGAA
GVKSPGGWSSGTSETDSTDAEAPPEVETGADIEFVLVVAGGHDLNDECIF
EAMTPPEYGLEEFVDGVEALDMPDDVINKVHGDASETPAGAGGGIAGGSN
GPKKTASVSIPPSVAGGGGGGGGGVAGSSAANAFENYAHVNEAHSTSKKK back to topmRNA from alignment at Scaffold_228:471231..475464- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft144_16a-0001 ID=EsuBft144_16a-0001|Name=EsuBft144_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4234bp|location=Sequence derived from alignment at Scaffold_228:471231..475464- (Ectocarpus subulatus male Bft15b)
GCTTGCTTGTTGCTCCGGTGGAACAATCCCCCCACCCCCGAACATGCGGC
AAGGCATATCGATAGGATGCGCCATCTATATAGGGTAGGGGAAACGTTCA
TGAGCCACCTTTGGCAAAGTAGGGAGGAACATCGGCGATCGGTCCTGTGG
GAACTCTCTAGGACGCGTGGTCAATGGTCTAGCTGCTAAGGCATGCAAAA
CATGAGTATGCCCCCCTCCCTCCCCCCTGCGCGCGCGTCGTGTGGTTTTT
CGCGCGCTGAAAAAAAAAAAAAAANAAACAGCAGTATCAGCGGCGGCATC
GGCGGCGGCAGCGGCGTCCACCGTTCGCGAGCGGCGAGTTACGGGGGTAG
TGACACGATCCGCAGAGATAAAACCGGCCAGGTTCGTGTCTGTCGTTGCT
ATGTAGGTCTTGTGTTATCGTATCGTGTGTGTGTGTGTGAGTGTGTTTTG
ACTGAGGTTGCGTAAGGTATCACACACACGCACACCCTGCTCTGCGGCTG
GACCGGGAGCGATTCACGAAAGCTCCATGTTTTGGTATGTTTCTCTGCAG
CGAAAAAGGCGACGGTGCCAAAGAGGCGAAACAGGCGGCGGCGTTGGAAC
GAAACTGTCTGACCCAGAGCGAGCTTTCCGAAAACCCATCCGTTTTTTTT
TACATCCTTTCTAGTCGTGGTATATACTATCGAGCTTTGAAATCGCTCGG
GGGGGTGTGGTATCTAACGTGGCCTACATCTTGTTGACCGCGTCAGTAAA
TATCGAGCTTTGAAAATCGTTCGGGTGCGTGTGGTATCTTGCGTGGCCTA
TATTTTGCTGGCTAGCTCTTGCCCCCCGCCTTTGCAGCCCCACACCCTGT
ACATCCCAAGGGTCAACAACTGGCGGGCACATATTTTTAGGACAGGCCAT
GACAGGCCATGCATAATTTAGGACGACGTAAAGAATATTCGCTGGGCACT
TGGGAACGTACGCTTGCTGTTCACAACAGGCTAATTGCTGTCTCCTGCCC
CATCCCCCCTCATCTTCGCCCACTACCCCCNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NCCCGCCAAAACGTATTTGGTCCATTTTTTTTTCACAGAGAACACGACAC
AGGCGCTCCCACAGTAGAGACTCCCAGCCCAGCCTGCGGAGAAGAAGCCT
GTCCAGGACCCCGACGCAGCGGCCCATTTGTCCCCCGGAAGGAATCTTCT
CGCTAGACGCGGGAGGCCTCGGCGCCTGGGAAACCCTCAAGGGAGCGGCG
GGAGTGTGAGAGATTTTATTTTGTGTCTGTGTTTGCTTGAAAATCATATC
TTTCACAGACACTTTTGAGTCTGGGATAGATTTGCAAATGAATTCAGTTC
GTTTTATCTTTTGCTTTTCTTGATTGCTGTGCTATGACGACCGTTTGCAG
GAGGACTACAGGTCGGTTTTTGGAGCAGGGACAGAACGAGGCCTTGGAGG
GAGGAGGGGCATCGGGGGTGGGAGTGTTTTCTTCTTTCATCGGGTGGTCT
CTCCCTGTTTTGATTTCCTTGTGCCCCTTGCTTGTCGAGCTTTGTTCGTG
CCAGACCATTGCTTTGTGGCTCTCTGCGGGAGTTTTGAGGCGAGATGGAG
CGGCGGCCTATGGCGCTTCGACGAAATTCCTCCCCGACCCCTTGTGGGAG
GCGACAAGATCCCCCCTCCCTCCCGATTTTTCACTTCGAACCCCCCACCC
GTGTAACCTGCTCATGTCGTGGCAGGAAATCCCCTGGGGGCTGGAGCTCG
GGGACATCGGAGACTGATTCTACTGACGCAGAGGCGGTGAGACCATCAGA
CCATTAGACCGTTGGCGGGGGGGCGTGTACTCATAATCGTGCATGCCGTA
GTCGTTAAGACCATTGACCTCGCATCCGTACAAAGCCGGGACGGAGCACG
CCGGGTTCTCACCGGACCAGGCTCTCACATCACCAAGCGCGAAGCGCCGC
GACGTATTCGGCGAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCCCCTTGCACGGA
GTGAGGCTTCTCCACCCCGCACAACATGATCCACTCGACCACCGTTATTT
GGTTACCGCCAAAAAATACAGAGGTAAAAAAAAAACCGGTAACCTGGTTG
CCGAGCTCACGAAGTGAATTGGGTTGTCTTACAACGTCGTTGCCAAGCGA
CGAAAACCCAATCCCGATGGCAAACACCGAGAGGGAGGCTTGTTTTACAA
CGTCGTTGCCAAGCGACGAAAACCCAACCCCGATGGCAAACACCGGGGGG
GGCGGCTTGTTTTACAACGTCGTTGCCAAGCGACGAAAACCCAACCCCGA
TNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGTCAGCATAGAGAGGACATTGATAAGAGGTTGGGTTTGGGCGA
CGGCTATGCATACAACGCGGGACACGCGATTGAGCATGTGTGCGGGGGGC
TGCGAAGTGGGAAAACGACTAGGGTAGGGCGGGAGGCATAACATCTGTTG
GTCGCCGCTGTTTCGGAGTAGACGTTGGGGCAACGGGTGTCAATACCGCC
ACAATACTTGGATCCTCGGTTGAGCCGATCGATTAGCATTGCCTCCCCGC
CATCTGTTCTCGAGCGTTGTTGAACGATTCCAGTGTTGGTGTCTTTTTTT
TTTCGTGAGCGTGCCGTGGCCTTGTCCTGCTGGCGCCAATCTCGCCTCTT
TGCTATTCCGTCAGTTTTCTGCCCATGTGGCGGTTTCTTTTGATGCCTTC
TTCTGATGTGATGGTTTCTTCTGATGTTATTGTTTCTCCTGATGCTCCCT
TCTGATGCTCTCTTCTGATGCCTTATATTCTGATGCATGCTTTCTTCTAA
TGCTCTTCTGATGATGATCCTTTCTGATGCTTCCTTCTGATGTTTTTCTT
CTGATGCCGGGTTCTTGTTTGTTTGTGGTGCAGCCGCCCGAGGTTGAGAC
CGGAGCCGACATTGAGTTCGTGCTCGTTGTGGCAGGGGGGCACGACCTCA
ACGACGAGTGTATCTTCGAGGTGACATGACGCCTTGCTGTTGTTTGTTGT
TGTTGTTGTTGTTGCTGTTGTTGTTGTTGTTGTTGTTGTGTATTCCGATA
CCATCTCGGATGTCAGCTTCGAGCGAGCATGGTTTGTGCTGGCTGAAGCC
CTCTGCATGCCCCGTGGTGCACATTTTCCACAATTCCACCGGACAACCAA
CCAACGAAGCATGGATATTGCCTACTGGAGCCGCTTTAAGGAGACGGTTT
CTTACGGAGGCCCCTTTGTGCAAGCTGCGTGCTCTGTGCGTCGTCTCGTG
TGATTCCCTCACGTCCTATTGTCGCCACGCCGACCAATCAGATCGATCAA
CCAATCCAATCGATCAGGCAATGACCCCGCCGGAGTACGGTCTGGAGGAG
TTCGTGGATGGTGTGGAGGCGTTGGACATGCCGGACGATGTCATCAACAA
GGTGAGGGTCAGGATCAATTCGCTGTGTTGTGGGTGTTTTTTTTGTTTCT
TGTGCTGTTTAATGTGGATGGCCATTCTTCGTCTTTCACCATGCGGGGAT
GATGGAAAAGTGGGTGTCGTTCCAGGCAAGAGTCCTTAGGCTTGCTGCGA
AGAGCTAGCCCTCTTGGTCTGTATGAGCGCCCTTCGAATCCCGGCAGAGC
GTCCGCAAGTGAGGGCATATCTTGTGCATTTCTTCGCATAAACTCATGCT
GTGTTGTTGTGTATTCAGTAGCAGCAGCGGCAGGGACGGTGGGACTGCTG
TCGGAGGCCCTTGTTATGAAAATTCCAGGCTTGTGCTCCGCCGTGGTTTG
TTTATTCTTGTGCGGTTCCACACTAATGTCATCATGATAAAACCAAACCG
ACATCAATCACCGGCGGTAGCACAAGCCTGGCAAAATCATTTTCTCACGA
GCGGCTGTGTCCCGGCAGGTGCACGGCGACGCGAGCGAGACTCCCGCGGG
CGCCGGCGGCGGCATCGCCGGAGGCAGCAACGGGCCCAAGAAGACGGCGA
GCGTGTCCATCCCGCCCTCCGTCGCCGGCGGCGGTGGCGGCGGCGGCGGC
GGCGTCGCCGGTTCGAGCGCCGCGAACGCCTTCGAGAATTACGCGCACGT
CAACGAGGCCCACTCAACCTCCAAGAAGAAGTAA back to topCoding sequence (CDS) from alignment at Scaffold_228:471231..475464- >EsuBft144_16a-0001 ID=EsuBft144_16a-0001|Name=EsuBft144_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=753bp|location=Sequence derived from alignment at Scaffold_228:471231..475464- (Ectocarpus subulatus male Bft15b)
ATGCGGCAAGGCATATCGATAGGATGCGCCATCTATATAGGTATCAGCGG
CGGCATCGGCGGCGGCAGCGGCGTCCACCGTTCGCGAGCGGCGAGTTACG
GGGGTAGTGACACGATCCGCAGAGATAAAACCGGCCAGAGAACACGACAC
AGGCGCTCCCACAGTAGAGACTCCCAGCCCAGCCTGCGGAGAAGAAGCCT
GTCCAGGACCCCGACGCAGCGGCCCATTTGTCCCCCGGAAGGAATCTTCT
CGCTAGACGCGGGAGGCCTCGGCGCCTGGGAAACCCTCAAGGGAGCGGCG
GGAGTGAAATCCCCTGGGGGCTGGAGCTCGGGGACATCGGAGACTGATTC
TACTGACGCAGAGGCGCCGCCCGAGGTTGAGACCGGAGCCGACATTGAGT
TCGTGCTCGTTGTGGCAGGGGGGCACGACCTCAACGACGAGTGTATCTTC
GAGGCAATGACCCCGCCGGAGTACGGTCTGGAGGAGTTCGTGGATGGTGT
GGAGGCGTTGGACATGCCGGACGATGTCATCAACAAGGTGCACGGCGACG
CGAGCGAGACTCCCGCGGGCGCCGGCGGCGGCATCGCCGGAGGCAGCAAC
GGGCCCAAGAAGACGGCGAGCGTGTCCATCCCGCCCTCCGTCGCCGGCGG
CGGTGGCGGCGGCGGCGGCGGCGTCGCCGGTTCGAGCGCCGCGAACGCCT
TCGAGAATTACGCGCACGTCAACGAGGCCCACTCAACCTCCAAGAAGAAG
TAA back to top
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