EsuBft144_16a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft144_16a-0001
Unique NameEsuBft144_16a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_228contigScaffold_228:471231..475464 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft144_16
Ownerapollo_admin@sb-roscoff.fr
Nb exon7
Length79
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft144_16aEsuBft144_16aEctocarpus subulatus male Bft15bgeneScaffold_228 471231..475464 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft144_16a-0001EsuBft144_16Ectocarpus subulatus male Bft15bpolypeptideScaffold_228 471231..475421 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft144_16a-0001-exonagat-exon-9046Ectocarpus subulatus male Bft15bexonScaffold_228 471231..471446 -
EsuBft144_16a-0001-exonagat-exon-9048Ectocarpus subulatus male Bft15bexonScaffold_228 471914..471997 -
EsuBft144_16a-0001-exonagat-exon-9047Ectocarpus subulatus male Bft15bexonScaffold_228 472345..472431 -
EsuBft144_16a-0001-exonagat-exon-9050Ectocarpus subulatus male Bft15bexonScaffold_228 473629..473689 -
EsuBft144_16a-0001-exonagat-exon-9049Ectocarpus subulatus male Bft15bexonScaffold_228 474160..474326 -
EsuBft144_16a-0001-exonagat-exon-9045Ectocarpus subulatus male Bft15bexonScaffold_228 475084..475180 -
EsuBft144_16a-0001-exonEsuBft144_16a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_228 475381..475464 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft144_16a-0001-cdsEsuBft144_16a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_228 471231..471446 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft144_16a-0001-exonagat-five_prime_utr-2606Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_228 475422..475464 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft144_16a-0001 ID=EsuBft144_16a-0001|Name=EsuBft144_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=796bp|location=Sequence derived from alignment at Scaffold_228:471231..475464- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCTTGCTTGTTGCTCCGGTGGAACAATCCCCCCACCCCCGAACATGCGGC
AAGGCATATCGATAGGATGCGCCATCTATATAGGTATCAGCGGCGGCATC
GGCGGCGGCAGCGGCGTCCACCGTTCGCGAGCGGCGAGTTACGGGGGTAG
TGACACGATCCGCAGAGATAAAACCGGCCAGAGAACACGACACAGGCGCT
CCCACAGTAGAGACTCCCAGCCCAGCCTGCGGAGAAGAAGCCTGTCCAGG
ACCCCGACGCAGCGGCCCATTTGTCCCCCGGAAGGAATCTTCTCGCTAGA
CGCGGGAGGCCTCGGCGCCTGGGAAACCCTCAAGGGAGCGGCGGGAGTGA
AATCCCCTGGGGGCTGGAGCTCGGGGACATCGGAGACTGATTCTACTGAC
GCAGAGGCGCCGCCCGAGGTTGAGACCGGAGCCGACATTGAGTTCGTGCT
CGTTGTGGCAGGGGGGCACGACCTCAACGACGAGTGTATCTTCGAGGCAA
TGACCCCGCCGGAGTACGGTCTGGAGGAGTTCGTGGATGGTGTGGAGGCG
TTGGACATGCCGGACGATGTCATCAACAAGGTGCACGGCGACGCGAGCGA
GACTCCCGCGGGCGCCGGCGGCGGCATCGCCGGAGGCAGCAACGGGCCCA
AGAAGACGGCGAGCGTGTCCATCCCGCCCTCCGTCGCCGGCGGCGGTGGC
GGCGGCGGCGGCGGCGTCGCCGGTTCGAGCGCCGCGAACGCCTTCGAGAA
TTACGCGCACGTCAACGAGGCCCACTCAACCTCCAAGAAGAAGTAA
back to top

protein sequence of EsuBft144_16a-0001

>EsuBft144_16 ID=EsuBft144_16|Name=EsuBft144_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=250bp
MRQGISIGCAIYIGISGGIGGGSGVHRSRAASYGGSDTIRRDKTGQRTRH
RRSHSRDSQPSLRRRSLSRTPTQRPICPPEGIFSLDAGGLGAWETLKGAA
GVKSPGGWSSGTSETDSTDAEAPPEVETGADIEFVLVVAGGHDLNDECIF
EAMTPPEYGLEEFVDGVEALDMPDDVINKVHGDASETPAGAGGGIAGGSN
GPKKTASVSIPPSVAGGGGGGGGGVAGSSAANAFENYAHVNEAHSTSKKK
back to top

mRNA from alignment at Scaffold_228:471231..475464-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft144_16a-0001 ID=EsuBft144_16a-0001|Name=EsuBft144_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4234bp|location=Sequence derived from alignment at Scaffold_228:471231..475464- (Ectocarpus subulatus male Bft15b)
GCTTGCTTGTTGCTCCGGTGGAACAATCCCCCCACCCCCGAACATGCGGC
AAGGCATATCGATAGGATGCGCCATCTATATAGGGTAGGGGAAACGTTCA
TGAGCCACCTTTGGCAAAGTAGGGAGGAACATCGGCGATCGGTCCTGTGG
GAACTCTCTAGGACGCGTGGTCAATGGTCTAGCTGCTAAGGCATGCAAAA
CATGAGTATGCCCCCCTCCCTCCCCCCTGCGCGCGCGTCGTGTGGTTTTT
CGCGCGCTGAAAAAAAAAAAAAAANAAACAGCAGTATCAGCGGCGGCATC
GGCGGCGGCAGCGGCGTCCACCGTTCGCGAGCGGCGAGTTACGGGGGTAG
TGACACGATCCGCAGAGATAAAACCGGCCAGGTTCGTGTCTGTCGTTGCT
ATGTAGGTCTTGTGTTATCGTATCGTGTGTGTGTGTGTGAGTGTGTTTTG
ACTGAGGTTGCGTAAGGTATCACACACACGCACACCCTGCTCTGCGGCTG
GACCGGGAGCGATTCACGAAAGCTCCATGTTTTGGTATGTTTCTCTGCAG
CGAAAAAGGCGACGGTGCCAAAGAGGCGAAACAGGCGGCGGCGTTGGAAC
GAAACTGTCTGACCCAGAGCGAGCTTTCCGAAAACCCATCCGTTTTTTTT
TACATCCTTTCTAGTCGTGGTATATACTATCGAGCTTTGAAATCGCTCGG
GGGGGTGTGGTATCTAACGTGGCCTACATCTTGTTGACCGCGTCAGTAAA
TATCGAGCTTTGAAAATCGTTCGGGTGCGTGTGGTATCTTGCGTGGCCTA
TATTTTGCTGGCTAGCTCTTGCCCCCCGCCTTTGCAGCCCCACACCCTGT
ACATCCCAAGGGTCAACAACTGGCGGGCACATATTTTTAGGACAGGCCAT
GACAGGCCATGCATAATTTAGGACGACGTAAAGAATATTCGCTGGGCACT
TGGGAACGTACGCTTGCTGTTCACAACAGGCTAATTGCTGTCTCCTGCCC
CATCCCCCCTCATCTTCGCCCACTACCCCCNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NCCCGCCAAAACGTATTTGGTCCATTTTTTTTTCACAGAGAACACGACAC
AGGCGCTCCCACAGTAGAGACTCCCAGCCCAGCCTGCGGAGAAGAAGCCT
GTCCAGGACCCCGACGCAGCGGCCCATTTGTCCCCCGGAAGGAATCTTCT
CGCTAGACGCGGGAGGCCTCGGCGCCTGGGAAACCCTCAAGGGAGCGGCG
GGAGTGTGAGAGATTTTATTTTGTGTCTGTGTTTGCTTGAAAATCATATC
TTTCACAGACACTTTTGAGTCTGGGATAGATTTGCAAATGAATTCAGTTC
GTTTTATCTTTTGCTTTTCTTGATTGCTGTGCTATGACGACCGTTTGCAG
GAGGACTACAGGTCGGTTTTTGGAGCAGGGACAGAACGAGGCCTTGGAGG
GAGGAGGGGCATCGGGGGTGGGAGTGTTTTCTTCTTTCATCGGGTGGTCT
CTCCCTGTTTTGATTTCCTTGTGCCCCTTGCTTGTCGAGCTTTGTTCGTG
CCAGACCATTGCTTTGTGGCTCTCTGCGGGAGTTTTGAGGCGAGATGGAG
CGGCGGCCTATGGCGCTTCGACGAAATTCCTCCCCGACCCCTTGTGGGAG
GCGACAAGATCCCCCCTCCCTCCCGATTTTTCACTTCGAACCCCCCACCC
GTGTAACCTGCTCATGTCGTGGCAGGAAATCCCCTGGGGGCTGGAGCTCG
GGGACATCGGAGACTGATTCTACTGACGCAGAGGCGGTGAGACCATCAGA
CCATTAGACCGTTGGCGGGGGGGCGTGTACTCATAATCGTGCATGCCGTA
GTCGTTAAGACCATTGACCTCGCATCCGTACAAAGCCGGGACGGAGCACG
CCGGGTTCTCACCGGACCAGGCTCTCACATCACCAAGCGCGAAGCGCCGC
GACGTATTCGGCGAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCCCCTTGCACGGA
GTGAGGCTTCTCCACCCCGCACAACATGATCCACTCGACCACCGTTATTT
GGTTACCGCCAAAAAATACAGAGGTAAAAAAAAAACCGGTAACCTGGTTG
CCGAGCTCACGAAGTGAATTGGGTTGTCTTACAACGTCGTTGCCAAGCGA
CGAAAACCCAATCCCGATGGCAAACACCGAGAGGGAGGCTTGTTTTACAA
CGTCGTTGCCAAGCGACGAAAACCCAACCCCGATGGCAAACACCGGGGGG
GGCGGCTTGTTTTACAACGTCGTTGCCAAGCGACGAAAACCCAACCCCGA
TNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGTCAGCATAGAGAGGACATTGATAAGAGGTTGGGTTTGGGCGA
CGGCTATGCATACAACGCGGGACACGCGATTGAGCATGTGTGCGGGGGGC
TGCGAAGTGGGAAAACGACTAGGGTAGGGCGGGAGGCATAACATCTGTTG
GTCGCCGCTGTTTCGGAGTAGACGTTGGGGCAACGGGTGTCAATACCGCC
ACAATACTTGGATCCTCGGTTGAGCCGATCGATTAGCATTGCCTCCCCGC
CATCTGTTCTCGAGCGTTGTTGAACGATTCCAGTGTTGGTGTCTTTTTTT
TTTCGTGAGCGTGCCGTGGCCTTGTCCTGCTGGCGCCAATCTCGCCTCTT
TGCTATTCCGTCAGTTTTCTGCCCATGTGGCGGTTTCTTTTGATGCCTTC
TTCTGATGTGATGGTTTCTTCTGATGTTATTGTTTCTCCTGATGCTCCCT
TCTGATGCTCTCTTCTGATGCCTTATATTCTGATGCATGCTTTCTTCTAA
TGCTCTTCTGATGATGATCCTTTCTGATGCTTCCTTCTGATGTTTTTCTT
CTGATGCCGGGTTCTTGTTTGTTTGTGGTGCAGCCGCCCGAGGTTGAGAC
CGGAGCCGACATTGAGTTCGTGCTCGTTGTGGCAGGGGGGCACGACCTCA
ACGACGAGTGTATCTTCGAGGTGACATGACGCCTTGCTGTTGTTTGTTGT
TGTTGTTGTTGTTGCTGTTGTTGTTGTTGTTGTTGTTGTGTATTCCGATA
CCATCTCGGATGTCAGCTTCGAGCGAGCATGGTTTGTGCTGGCTGAAGCC
CTCTGCATGCCCCGTGGTGCACATTTTCCACAATTCCACCGGACAACCAA
CCAACGAAGCATGGATATTGCCTACTGGAGCCGCTTTAAGGAGACGGTTT
CTTACGGAGGCCCCTTTGTGCAAGCTGCGTGCTCTGTGCGTCGTCTCGTG
TGATTCCCTCACGTCCTATTGTCGCCACGCCGACCAATCAGATCGATCAA
CCAATCCAATCGATCAGGCAATGACCCCGCCGGAGTACGGTCTGGAGGAG
TTCGTGGATGGTGTGGAGGCGTTGGACATGCCGGACGATGTCATCAACAA
GGTGAGGGTCAGGATCAATTCGCTGTGTTGTGGGTGTTTTTTTTGTTTCT
TGTGCTGTTTAATGTGGATGGCCATTCTTCGTCTTTCACCATGCGGGGAT
GATGGAAAAGTGGGTGTCGTTCCAGGCAAGAGTCCTTAGGCTTGCTGCGA
AGAGCTAGCCCTCTTGGTCTGTATGAGCGCCCTTCGAATCCCGGCAGAGC
GTCCGCAAGTGAGGGCATATCTTGTGCATTTCTTCGCATAAACTCATGCT
GTGTTGTTGTGTATTCAGTAGCAGCAGCGGCAGGGACGGTGGGACTGCTG
TCGGAGGCCCTTGTTATGAAAATTCCAGGCTTGTGCTCCGCCGTGGTTTG
TTTATTCTTGTGCGGTTCCACACTAATGTCATCATGATAAAACCAAACCG
ACATCAATCACCGGCGGTAGCACAAGCCTGGCAAAATCATTTTCTCACGA
GCGGCTGTGTCCCGGCAGGTGCACGGCGACGCGAGCGAGACTCCCGCGGG
CGCCGGCGGCGGCATCGCCGGAGGCAGCAACGGGCCCAAGAAGACGGCGA
GCGTGTCCATCCCGCCCTCCGTCGCCGGCGGCGGTGGCGGCGGCGGCGGC
GGCGTCGCCGGTTCGAGCGCCGCGAACGCCTTCGAGAATTACGCGCACGT
CAACGAGGCCCACTCAACCTCCAAGAAGAAGTAA
back to top

Coding sequence (CDS) from alignment at Scaffold_228:471231..475464-

>EsuBft144_16a-0001 ID=EsuBft144_16a-0001|Name=EsuBft144_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=753bp|location=Sequence derived from alignment at Scaffold_228:471231..475464- (Ectocarpus subulatus male Bft15b)
ATGCGGCAAGGCATATCGATAGGATGCGCCATCTATATAGGTATCAGCGG
CGGCATCGGCGGCGGCAGCGGCGTCCACCGTTCGCGAGCGGCGAGTTACG
GGGGTAGTGACACGATCCGCAGAGATAAAACCGGCCAGAGAACACGACAC
AGGCGCTCCCACAGTAGAGACTCCCAGCCCAGCCTGCGGAGAAGAAGCCT
GTCCAGGACCCCGACGCAGCGGCCCATTTGTCCCCCGGAAGGAATCTTCT
CGCTAGACGCGGGAGGCCTCGGCGCCTGGGAAACCCTCAAGGGAGCGGCG
GGAGTGAAATCCCCTGGGGGCTGGAGCTCGGGGACATCGGAGACTGATTC
TACTGACGCAGAGGCGCCGCCCGAGGTTGAGACCGGAGCCGACATTGAGT
TCGTGCTCGTTGTGGCAGGGGGGCACGACCTCAACGACGAGTGTATCTTC
GAGGCAATGACCCCGCCGGAGTACGGTCTGGAGGAGTTCGTGGATGGTGT
GGAGGCGTTGGACATGCCGGACGATGTCATCAACAAGGTGCACGGCGACG
CGAGCGAGACTCCCGCGGGCGCCGGCGGCGGCATCGCCGGAGGCAGCAAC
GGGCCCAAGAAGACGGCGAGCGTGTCCATCCCGCCCTCCGTCGCCGGCGG
CGGTGGCGGCGGCGGCGGCGGCGTCGCCGGTTCGAGCGCCGCGAACGCCT
TCGAGAATTACGCGCACGTCAACGAGGCCCACTCAACCTCCAAGAAGAAG
TAA
back to top