EsuBft144_14a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft144_14a-0001
Unique Name	EsuBft144_14a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_228	contig	Scaffold_228:484317..485278 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7G873
ProteomeId	EsuBft144_14
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	2759\|Eukaryota
Length	96
Hectar predicted targeting category	other localisation
Evalue	4.4e-63
EggNOG OGs	COG0553@1\|root,COG2940@1\|root,COG5076@1\|root,KOG1075@1\|root,KOG0383@2759\|Eukaryota,KOG0384@2759\|Eukaryota,KOG1075@2759\|Eukaryota,KOG1081@2759\|Eukaryota,KOG1474@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14
KEGG rclass	RC00003,RC00004,RC00039,RC00041,RC00060,RC00181,RC00496
KEGG ko	ko:K11367,ko:K11424,ko:K11654,ko:K13506,ko:K14437
KEGG Reaction	R00851,R03875,R03938,R04866,R04867,R09380
KEGG Pathway	ko00310,ko00561,ko00564,ko01100,ko01110,ko05202,map00310,map00561,map00564,map01100,map01110,map05202
KEGG Module	M00089
EC	2.1.1.43,2.3.1.15,3.6.4.12
Description	acetylation-dependent protein binding
COG category	BK
BRITE	ko00000,ko00001,ko00002,ko01000,ko01004,ko03021,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft144_14a	EsuBft144_14a	Ectocarpus subulatus male Bft15b	gene	Scaffold_228 484317..485278 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft144_14a-0001-exon	EsuBft144_14a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_228 484317..485278 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft144_14a-0001-cds	EsuBft144_14a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_228 484317..485258 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft144_14a-0001-exon	agat-three_prime_utr-3961	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_228 485259..485278 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft144_14a-0001	EsuBft144_14	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_228 484317..485258 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_228:484317..485278+
coding sequence from alignment at Scaffold_228:484317..485278+

spliced messenger RNA

>EsuBft144_14a-0001 ID=EsuBft144_14a-0001|Name=EsuBft144_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=962bp|location=Sequence derived from alignment at Scaffold_228:484317..485278+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAGATAAGAAGGTAGTGAAAGAACTCGAGGCGGCGCAGATGAAAGC
AGCGAAAATCATCCTAGGATGCTCCAAGCGCACACGTAATGCAGCCGTCA
GGGCAGAATTGGGGATCCAATCCCAACGGTCGGGAAGAGACGCAAGGAAG
CTGACATGGCAGTATTGCATGTGCGGGATGGGAGAGGAGAGAATGCCGAG
AATAGTATGGGAGACGAAGTGGGCAAACAAAAAGAGGGGTAGACAACCCA
CGGAATGGGTCAAGGTTGTAGAGGACGTATGGAAGGGGCTCGACATCGAC
GAAGATGAAACGCTGGAAACGGAGGGTCTAAAGGGGTTCAAGGCGAAGAT
ATCTGTTGCTTGTGCCGAGGGAGGAGAACAGAAACTAAGGAAAGAAACCA
AGGACAAGGAGTGTCTAGGAGTGTACGGAATGTTGAAGGAAGGAATAGGG
TTGAAGGATTACCTACAGGGACCAATGGATGCAGGAACAAAGCTTAAGGT
CGAATTCAGGGCCAGAGACGAAGGCCTTCCAGAACGTCGACGAAGACACA
GGACGGTAGACGACGAAGTCGACGAGTTCAAATGTGATTGCGGCTTCGAA
TGCGAAGACCGTGTTCATGTAGTCGCGGAATGTCCGTGGTACAAGAAGGA
GAGGCAAGTGTACGTGACTGAGCTGGGAAAAATAGATGGGACGCACAGGG
AGATGTTTGAGGCATGGGATACAAAGGAAAGTACGGTAGCTGTACTGGGG
CATAGGAGGTGGGTTGAAAAGGCGGGAAGGGATATCGTTAGGATAGACAG
ACTAGGGAAGACATTTTTGAGCCACCTTTGGCAAAGTAGAAAGGAACGAT
TGGCCATCGGTGATCGGTCCTGTGGGAACAATGCTCCGTCCTATCGAGGA
CGTGCGGTCAATGGTCTAACCGCTAAGGCATGCAGAACATAAGAGTACGC
CCCTCCCCCCCC

protein sequence of EsuBft144_14a-0001

>EsuBft144_14 ID=EsuBft144_14|Name=EsuBft144_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=313bp
MGDKKVVKELEAAQMKAAKIILGCSKRTRNAAVRAELGIQSQRSGRDARK
LTWQYCMCGMGEERMPRIVWETKWANKKRGRQPTEWVKVVEDVWKGLDID
EDETLETEGLKGFKAKISVACAEGGEQKLRKETKDKECLGVYGMLKEGIG
LKDYLQGPMDAGTKLKVEFRARDEGLPERRRRHRTVDDEVDEFKCDCGFE
CEDRVHVVAECPWYKKERQVYVTELGKIDGTHREMFEAWDTKESTVAVLG
HRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSYRG
RAVNGLTAKACRT

mRNA from alignment at Scaffold_228:484317..485278+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft144_14a-0001 ID=EsuBft144_14a-0001|Name=EsuBft144_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=962bp|location=Sequence derived from alignment at Scaffold_228:484317..485278+ (Ectocarpus subulatus male Bft15b)
ATGGGAGATAAGAAGGTAGTGAAAGAACTCGAGGCGGCGCAGATGAAAGC
AGCGAAAATCATCCTAGGATGCTCCAAGCGCACACGTAATGCAGCCGTCA
GGGCAGAATTGGGGATCCAATCCCAACGGTCGGGAAGAGACGCAAGGAAG
CTGACATGGCAGTATTGCATGTGCGGGATGGGAGAGGAGAGAATGCCGAG
AATAGTATGGGAGACGAAGTGGGCAAACAAAAAGAGGGGTAGACAACCCA
CGGAATGGGTCAAGGTTGTAGAGGACGTATGGAAGGGGCTCGACATCGAC
GAAGATGAAACGCTGGAAACGGAGGGTCTAAAGGGGTTCAAGGCGAAGAT
ATCTGTTGCTTGTGCCGAGGGAGGAGAACAGAAACTAAGGAAAGAAACCA
AGGACAAGGAGTGTCTAGGAGTGTACGGAATGTTGAAGGAAGGAATAGGG
TTGAAGGATTACCTACAGGGACCAATGGATGCAGGAACAAAGCTTAAGGT
CGAATTCAGGGCCAGAGACGAAGGCCTTCCAGAACGTCGACGAAGACACA
GGACGGTAGACGACGAAGTCGACGAGTTCAAATGTGATTGCGGCTTCGAA
TGCGAAGACCGTGTTCATGTAGTCGCGGAATGTCCGTGGTACAAGAAGGA
GAGGCAAGTGTACGTGACTGAGCTGGGAAAAATAGATGGGACGCACAGGG
AGATGTTTGAGGCATGGGATACAAAGGAAAGTACGGTAGCTGTACTGGGG
CATAGGAGGTGGGTTGAAAAGGCGGGAAGGGATATCGTTAGGATAGACAG
ACTAGGGAAGACATTTTTGAGCCACCTTTGGCAAAGTAGAAAGGAACGAT
TGGCCATCGGTGATCGGTCCTGTGGGAACAATGCTCCGTCCTATCGAGGA
CGTGCGGTCAATGGTCTAACCGCTAAGGCATGCAGAACATAAGAGTACGC
CCCTCCCCCCCC

Coding sequence (CDS) from alignment at Scaffold_228:484317..485278+

>EsuBft144_14a-0001 ID=EsuBft144_14a-0001|Name=EsuBft144_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=942bp|location=Sequence derived from alignment at Scaffold_228:484317..485278+ (Ectocarpus subulatus male Bft15b)
ATGGGAGATAAGAAGGTAGTGAAAGAACTCGAGGCGGCGCAGATGAAAGC
AGCGAAAATCATCCTAGGATGCTCCAAGCGCACACGTAATGCAGCCGTCA
GGGCAGAATTGGGGATCCAATCCCAACGGTCGGGAAGAGACGCAAGGAAG
CTGACATGGCAGTATTGCATGTGCGGGATGGGAGAGGAGAGAATGCCGAG
AATAGTATGGGAGACGAAGTGGGCAAACAAAAAGAGGGGTAGACAACCCA
CGGAATGGGTCAAGGTTGTAGAGGACGTATGGAAGGGGCTCGACATCGAC
GAAGATGAAACGCTGGAAACGGAGGGTCTAAAGGGGTTCAAGGCGAAGAT
ATCTGTTGCTTGTGCCGAGGGAGGAGAACAGAAACTAAGGAAAGAAACCA
AGGACAAGGAGTGTCTAGGAGTGTACGGAATGTTGAAGGAAGGAATAGGG
TTGAAGGATTACCTACAGGGACCAATGGATGCAGGAACAAAGCTTAAGGT
CGAATTCAGGGCCAGAGACGAAGGCCTTCCAGAACGTCGACGAAGACACA
GGACGGTAGACGACGAAGTCGACGAGTTCAAATGTGATTGCGGCTTCGAA
TGCGAAGACCGTGTTCATGTAGTCGCGGAATGTCCGTGGTACAAGAAGGA
GAGGCAAGTGTACGTGACTGAGCTGGGAAAAATAGATGGGACGCACAGGG
AGATGTTTGAGGCATGGGATACAAAGGAAAGTACGGTAGCTGTACTGGGG
CATAGGAGGTGGGTTGAAAAGGCGGGAAGGGATATCGTTAGGATAGACAG
ACTAGGGAAGACATTTTTGAGCCACCTTTGGCAAAGTAGAAAGGAACGAT
TGGCCATCGGTGATCGGTCCTGTGGGAACAATGCTCCGTCCTATCGAGGA
CGTGCGGTCAATGGTCTAACCGCTAAGGCATGCAGAACATAA