EsuBft144_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft144_11a-0001
Unique Name	EsuBft144_11a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_228	contig	Scaffold_228:505560..507413 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft144_11
Protein domains	IPR001878
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	165
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Cross References

External references for this mRNA


Database	Accession
GO	0003676
GO	0008270

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft144_11a	EsuBft144_11a	Ectocarpus subulatus male Bft15b	gene	Scaffold_228 505560..507413 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft144_11a-0001	EsuBft144_11	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_228 505560..506114 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft144_11a-0001-exon	agat-exon-9014	Ectocarpus subulatus male Bft15b	exon	Scaffold_228 505560..506725 +
EsuBft144_11a-0001-exon	agat-exon-9015	Ectocarpus subulatus male Bft15b	exon	Scaffold_228 506809..506910 +
EsuBft144_11a-0001-exon	EsuBft144_11a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_228 507027..507413 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft144_11a-0001-cds	EsuBft144_11a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_228 505560..506114 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft144_11a-0001-exon	agat-three_prime_utr-3956	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_228 506115..506725 +
EsuBft144_11a-0001-exon	agat-three_prime_utr-3957	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_228 506809..506910 +
EsuBft144_11a-0001-exon	agat-three_prime_utr-3958	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_228 507027..507413 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_228:505560..507413+
coding sequence from alignment at Scaffold_228:505560..507413+

spliced messenger RNA

>EsuBft144_11a-0001 ID=EsuBft144_11a-0001|Name=EsuBft144_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1655bp|location=Sequence derived from alignment at Scaffold_228:505560..507413+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTTGGACTACCTCGTACCTCTGGGGGGAGATTTTTCAGTGTGGGAA
CGCGTACCTCCAAGATCCGATCGTGTTTACGCGATTTATCGACTCTCTAC
CGTCCGAATATGAGGTATCGAAGGAGACGCTGGCATCCACCATAGACCTC
ATAAGGGACACCCTCATCCGGGTGGTGGTTACCCGGTTCCGCACCATCAG
CAAGAAAGCGGCGCGGGCGAAAGCGCCAAAGGCAGTAAAACAGGCCTTCC
TCGCTAGGGACGGCGGGGGGGGGCAACGGGGCGGCCGTAGCAACGGGCGG
AACAAGAGAGGAAAAGGCGGTGGCACCGGCGAGAACAATAGCAAATCGAA
CGGCGACGCCCCTGACCATCAGCGGTGCTTCAGGGACAACCAGAAGGGAC
ACTACAAATGGGACTGGGACACGGAGGAGTCCAAGTTCATCCCGAGGTGC
GAAAAATGCTCGGGGTTCGGCCACACCAAGGAAAAGTGCCCGTCTGTTGA
TGAAGTGGCGACGCTGGCGATCCAACTGCCTGAGCGGTGCAGCAGCCTGG
AGTAAATGCTGGATGTCGAGTGCGAGGCGCTCTGAGAAAAGGAAAGGGGG
GTCGAGGGGGTGAAAGAGAGCACGGGGCCACGGCGGATACTACTTTCTGG
TTGAGATTCGTGAGTGATGTTGAATGATTTTGATTGTGACGAATGATACC
GAAGGTTTCTACAGGGGATTCACGGTTAAGGCGTTTCCATTTTCTGATTT
GGCCTTCGTAGAGTGATGGTAGTTTCACTTACGATCATGCAATCAATGAT
GTTTTGTCGAAAGGGGATTAGCGGTTCAGGCATTTCCATTCCTGAGTGTG
GGTGTCCTGTTGAGCAATTGTAGTTCGTCTTATTCGAAAGTAAAGTCCAG
GCGTGTTATCGTGGGTGTTTCGCACGTCAATCGTAATTCGGCTCCAAAAA
CCAGCCATTCTATGATGGGGATTCGCGGTACGGGCGCTTCCATTTCGTGC
TGTTCGCGGGCGATGAAAACTTTGTCCGGGGCAGAATAAACGGGGAATGC
GGGGCCAAGCGTATCAAATGAGGGGGTGCAGCACAGGCGCTCCCCGCGGC
CGATGAAAACTCACGCACAGATGTACACAGGACCCGGTGTATCAAAAGTT
GCAGACACCGGCGCAGGTAGGTGTGGATCCGTGTACCAGACGTATCACCT
TGTGTGCGTGAGGTGGAAATGGGGAGGGGAGGACACCGTTCATGGTGACA
TTCCCGTTGTTGCTGCAGGAACCACTGTGTATGGCTTGTAGGAGGAAAGG
AAGCCTCAGCAATGATAAATTCTCGATGCAGTAGACAGTCATGCGTGTTT
TTCCGCGAGCGTTGAATGAGAGGGGTATGGTGTGAGCGCACCACTCGCTA
CAAAGCGAGGGAGGTTATCGCACGACATGATGGCCCGCAGTGTTCTTCGA
GTGAGGGAGAGCAGCCATATCGACGCGTGCTGCATAGTGGTTGATGAGAA
TTGGAACTTTGTTTTCTCTGAGGTCGTTGAGAATTGGAACTTTTTTTTTC
TGAGAGTTGAAGAGTTGTGCGTAAGCAGGCTGAAGTTTGACTTTGAGAGT
CGGAGTACGAGTTGAATGCAAGGAGGCTTATCATGCTTGATGCGTTTGGC
AAAAC

protein sequence of EsuBft144_11a-0001

>EsuBft144_11 ID=EsuBft144_11|Name=EsuBft144_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=184bp
MSWTTSYLWGEIFQCGNAYLQDPIVFTRFIDSLPSEYEVSKETLASTIDL
IRDTLIRVVVTRFRTISKKAARAKAPKAVKQAFLARDGGGGQRGGRSNGR
NKRGKGGGTGENNSKSNGDAPDHQRCFRDNQKGHYKWDWDTEESKFIPRC
EKCSGFGHTKEKCPSVDEVATLAIQLPERCSSLE

mRNA from alignment at Scaffold_228:505560..507413+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft144_11a-0001 ID=EsuBft144_11a-0001|Name=EsuBft144_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1854bp|location=Sequence derived from alignment at Scaffold_228:505560..507413+ (Ectocarpus subulatus male Bft15b)
ATGAGTTGGACTACCTCGTACCTCTGGGGGGAGATTTTTCAGTGTGGGAA
CGCGTACCTCCAAGATCCGATCGTGTTTACGCGATTTATCGACTCTCTAC
CGTCCGAATATGAGGTATCGAAGGAGACGCTGGCATCCACCATAGACCTC
ATAAGGGACACCCTCATCCGGGTGGTGGTTACCCGGTTCCGCACCATCAG
CAAGAAAGCGGCGCGGGCGAAAGCGCCAAAGGCAGTAAAACAGGCCTTCC
TCGCTAGGGACGGCGGGGGGGGGCAACGGGGCGGCCGTAGCAACGGGCGG
AACAAGAGAGGAAAAGGCGGTGGCACCGGCGAGAACAATAGCAAATCGAA
CGGCGACGCCCCTGACCATCAGCGGTGCTTCAGGGACAACCAGAAGGGAC
ACTACAAATGGGACTGGGACACGGAGGAGTCCAAGTTCATCCCGAGGTGC
GAAAAATGCTCGGGGTTCGGCCACACCAAGGAAAAGTGCCCGTCTGTTGA
TGAAGTGGCGACGCTGGCGATCCAACTGCCTGAGCGGTGCAGCAGCCTGG
AGTAAATGCTGGATGTCGAGTGCGAGGCGCTCTGAGAAAAGGAAAGGGGG
GTCGAGGGGGTGAAAGAGAGCACGGGGCCACGGCGGATACTACTTTCTGG
TTGAGATTCGTGAGTGATGTTGAATGATTTTGATTGTGACGAATGATACC
GAAGGTTTCTACAGGGGATTCACGGTTAAGGCGTTTCCATTTTCTGATTT
GGCCTTCGTAGAGTGATGGTAGTTTCACTTACGATCATGCAATCAATGAT
GTTTTGTCGAAAGGGGATTAGCGGTTCAGGCATTTCCATTCCTGAGTGTG
GGTGTCCTGTTGAGCAATTGTAGTTCGTCTTATTCGAAAGTAAAGTCCAG
GCGTGTTATCGTGGGTGTTTCGCACGTCAATCGTAATTCGGCTCCAAAAA
CCAGCCATTCTATGATGGGGATTCGCGGTACGGGCGCTTCCATTTCGTGC
TGTTCGCGGGCGATGAAAACTTTGTCCGGGGCAGAATAAACGGGGAATGC
GGGGCCAAGCGTATCAAATGAGGGGGTGCAGCACAGGCGCTCCCCGCGGC
CGATGAAAACTCACGCACAGATGTACACAGGACCCGGTGTATCAAAAGTT
GCAGACACCGGCGCAGGTAAAATTGTGCTGGTGTCAACATGAGGTGGAAA
TGGGGAGGGGAGGACACCATTGATGGTGACATTCCCGTTGTTGCTGCAGG
TAGGTGTGGATCCGTGTACCAGACGTATCACCTTGTGTGCGTGAGGTGGA
AATGGGGAGGGGAGGACACCGTTCATGGTGACATTCCCGTTGTTGCTGCA
GGTAGGTGTGGACCCATGTACCAGACGTATCCACCTTGTTGAGGGGTTCG
CAGTGGCAAGGCCTCCCTACAACCTGTATCAGTGTTTGTCTTGTGAAGGG
GAGAAGCCCCATGATAGGAACCACTGTGTATGGCTTGTAGGAGGAAAGGA
AGCCTCAGCAATGATAAATTCTCGATGCAGTAGACAGTCATGCGTGTTTT
TCCGCGAGCGTTGAATGAGAGGGGTATGGTGTGAGCGCACCACTCGCTAC
AAAGCGAGGGAGGTTATCGCACGACATGATGGCCCGCAGTGTTCTTCGAG
TGAGGGAGAGCAGCCATATCGACGCGTGCTGCATAGTGGTTGATGAGAAT
TGGAACTTTGTTTTCTCTGAGGTCGTTGAGAATTGGAACTTTTTTTTTCT
GAGAGTTGAAGAGTTGTGCGTAAGCAGGCTGAAGTTTGACTTTGAGAGTC
GGAGTACGAGTTGAATGCAAGGAGGCTTATCATGCTTGATGCGTTTGGCA
AAAC

Coding sequence (CDS) from alignment at Scaffold_228:505560..507413+

>EsuBft144_11a-0001 ID=EsuBft144_11a-0001|Name=EsuBft144_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=555bp|location=Sequence derived from alignment at Scaffold_228:505560..507413+ (Ectocarpus subulatus male Bft15b)
ATGAGTTGGACTACCTCGTACCTCTGGGGGGAGATTTTTCAGTGTGGGAA
CGCGTACCTCCAAGATCCGATCGTGTTTACGCGATTTATCGACTCTCTAC
CGTCCGAATATGAGGTATCGAAGGAGACGCTGGCATCCACCATAGACCTC
ATAAGGGACACCCTCATCCGGGTGGTGGTTACCCGGTTCCGCACCATCAG
CAAGAAAGCGGCGCGGGCGAAAGCGCCAAAGGCAGTAAAACAGGCCTTCC
TCGCTAGGGACGGCGGGGGGGGGCAACGGGGCGGCCGTAGCAACGGGCGG
AACAAGAGAGGAAAAGGCGGTGGCACCGGCGAGAACAATAGCAAATCGAA
CGGCGACGCCCCTGACCATCAGCGGTGCTTCAGGGACAACCAGAAGGGAC
ACTACAAATGGGACTGGGACACGGAGGAGTCCAAGTTCATCCCGAGGTGC
GAAAAATGCTCGGGGTTCGGCCACACCAAGGAAAAGTGCCCGTCTGTTGA
TGAAGTGGCGACGCTGGCGATCCAACTGCCTGAGCGGTGCAGCAGCCTGG
AGTAA