Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7G2K5 |
| ProteomeId | EsuBft144_10 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 1 |
| Max annot lvl | 2759|Eukaryota |
| Length | 112 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.5e-07 |
| EggNOG OGs | COG0666@1|root,KOG4177@2759|Eukaryota |
| Ec32 ortholog description | EsV-1-21 |
| Ec32 ortholog | Ec-11_002570.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | spectrin binding |
| COG category | I |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft144_10a-0001 ID=EsuBft144_10a-0001|Name=EsuBft144_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1129bp|location=Sequence derived from alignment at Scaffold_228:516153..518006+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGCACCAAAACGTCGGAAACAACACTCCAACCGCGCCCGCCGCCGTCGC
CGGCGAGGAATCGCCTGAAGCTCACCCCAGAAGCCGCCCTAGGCTTGAGA
CACCGCCAAAAAGCGGTGCCGGCGGCAACAGCAGCACGGCAGGGGTGGAA
GGCGGCCAAAGCGGAATCTGTAAACTGGGTAGCGACAGTCCGAGGCCTGG
TGGCCTGAATGGTGACTCTGCAGCTTGGCTGACGAGCACGGGCGAAGAGG
CGATTTTCCGCCGCATCGTGATGTTCTTGTGAACAGGACTGCCGTCGTTC
AGCTGGCAAGGACGCCAATAGGTGCCGCATGTACATACATTTGCCTCCAA
TCGGTGCCGCATGTGCATACATTGCCTGCCAGAGCAAGCGGCCCAGCTTC
CGTTGAGGAGATTGAGGAGATTCGCAATAGCAGAAGGCGTACAGGAAATG
AGATCCCAAATGTGCGACGTGCTCGAATGCTGGTGATAGCCATCTTCGTA
ATTGCGACAAACTTGGAGCAATGCCTCTTCGAACTTTGGATGTTGTGGCC
GAATCCGTTGGCACTGCTGATATTCATGTCGACCGTAGATCCAAATGCAC
GGGGTTGTGCCTGCTGTACACGTGGGCGATCGAAGCCTCGAGGAAGCTGG
TGCACCGGAGTGGGGGGAGGAGGTTGGTCGTGCCATGTATTGTAGATCAC
TTCCGTTCCTCGCAGAAACGCGTGTGGCACGTCCGCACGTGGTATGTATG
TGGTGCTGATGCCCCTCAACCTTGCGAGGACAATCGGCTACACAGTCAAG
ACGAAGATAAGTATGTTGGGACGAACTCCTTGCGGTTCCCCAAAGATTAT
AGTGTGTGGGGTGTGCATGATGAGTGTTATTGAATTGTATTGATTGTCCT
ACAGTAGTTACGAGAATATATTTTCTTTGTCATGCCTTTCACATGTAGAC
TAGTCTTAAATTCTGTTGTAGGACCGCTTCATTGTAAGTTGAGATTTTGC
TGTGTGAGAATGCTTTCCATTTTGTCTTTTACCAGAGCGACCGGTGTTTT
AGTTCTTCTGAGATACAACCCGTGCGCGGGTTTTGATTGTTCATATTCGA
TCGCCCCGGTCGTCTAGTTGGTATCCTCG back to topprotein sequence of EsuBft144_10a-0001 >EsuBft144_10 ID=EsuBft144_10|Name=EsuBft144_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=93bp
MHQNVGNNTPTAPAAVAGEESPEAHPRSRPRLETPPKSGAGGNSSTAGVE
GGQSGICKLGSDSPRPGGLNGDSAAWLTSTGEEAIFRRIVMFL back to topmRNA from alignment at Scaffold_228:516153..518006+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft144_10a-0001 ID=EsuBft144_10a-0001|Name=EsuBft144_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1854bp|location=Sequence derived from alignment at Scaffold_228:516153..518006+ (Ectocarpus subulatus male Bft15b)
ATGCACCAAAACGTCGGAAACAACACTCCAACCGCGCCCGCCGCCGTCGC
CGGCGAGGAATCGCCTGAAGCTCACCCCAGAAGCCGCCCTAGGCTTGAGA
CACCGCCAAAAAGCGGTGCCGGCGGCAACAGCAGCACGGCAGGGGTGGAA
GGCGGCCAAAGCGGAATCTGTAAACTGGGTAGCGACAGTCCGAGGCCTGG
TGGCCTGAATGGTGACTCTGCAGCTTGGCTGACGAGCACGGGCGAAGAGG
CGATTTTCCGCCGCATCGTGATGTTCTTGTGAACAGGACTGCCGTCGTTC
AGCTGGCAAGGTAGACTGTGTACTGAGTAATCACTAAACCTATTTTCAAT
ATTGGAGTGCGCGATCAAGCAGAGATATAAACCCTTTTCAAATTCTGTTG
GATTTCGTTGTCGGGGAGTCGGTCGCGAGTGTTTGTGCTAGAGCATGGTG
GGTTTTTAGTTTAGAGCGAGTGAAGGTCGACTCAAGAGCACGTTTTACTT
TACTTACCGCCTTCGTCCATAAGTCATTGGGCGCATGTTTCCCGCATGCT
GTGGGCAACCTTCGTCGAAGCAGGCGCTGGTGTGCAGGCCTATCCTACAC
CATTTGCTCACTATTTTCGTGGAAGCGAGGAGGATTTCATGAGGGTATTC
TTTGCCCGACCTCACCAACCTTGAAATATTGTAAAGCAAACGCGCCACAC
GCACAAATGTGCCCTGCCACAGCAAGAACGGCCTAACGCAGTAGCCGATG
TGTGTGTCGCTACTTATTTTAACTTGCCTTGCAAGTGTCCTGTGCGCTTC
CGAAATCCAGTCTGTCAGCCACAAGCCTTGGTGGCCTTCTCGCTTGTGCC
CTTGTGGTAACGTCGGTTCTCGGCGCAATAGGCCGGCCAAACCGTCTAGT
TCTTCATAGATATCGACTAGGTTTCGTTTACATTGGCGGCATGTTGGCTG
GCAGCCGTGACTTCTAATCCAGTGCATTCCGTCTCGCGCCCTTTTCCGAT
TCCGTTTGCCGCCGGTGTTATGGCCGACCTCACAGGACGCCAATAGGTGC
CGCATGTACATACATTTGCCTCCAATCGGTGCCGCATGTGCATACATTGC
CTGCCAGAGCAAGCGGCCCAGCTTCCGTTGAGGAGATTGAGGAGATTCGC
AATAGCAGAAGGCGTACAGGAAATGAGATCCCAAATGTGCGACGTGCTCG
AATGCTGGTGATAGCCATCTTCGTAATTGCGACAAACTTGGAGCAATGCC
TCTTCGAACTTTGGATGTTGTGGCCGAATCCGTTGGCACTGCTGATATTC
ATGTCGACCGTAGATCCAAATGCACGGGGTTGTGCCTGCTGTACACGTGG
GCGATCGAAGCCTCGAGGAAGCTGGTGCACCGGAGTGGGGGGAGGAGGTT
GGTCGTGCCATGTATTGTAGATCACTTCCGTTCCTCGCAGAAACGCGTGT
GGCACGTCCGCACGTGGTATGTATGTGGTGCTGATGCCCCTCAACCTTGC
GAGGACAATCGGCTACACAGTCAAGACGAAGATAAGTATGTTGGGACGAA
CTCCTTGCGGTTCCCCAAAGATTATAGTGTGTGGGGTGTGCATGATGAGT
GTTATTGAATTGTATTGATTGTCCTACAGTAGTTACGAGAATATATTTTC
TTTGTCATGCCTTTCACATGTAGACTAGTCTTAAATTCTGTTGTAGGACC
GCTTCATTGTAAGTTGAGATTTTGCTGTGTGAGAATGCTTTCCATTTTGT
CTTTTACCAGAGCGACCGGTGTTTTAGTTCTTCTGAGATACAACCCGTGC
GCGGGTTTTGATTGTTCATATTCGATCGCCCCGGTCGTCTAGTTGGTATC
CTCG back to topCoding sequence (CDS) from alignment at Scaffold_228:516153..518006+ >EsuBft144_10a-0001 ID=EsuBft144_10a-0001|Name=EsuBft144_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=282bp|location=Sequence derived from alignment at Scaffold_228:516153..518006+ (Ectocarpus subulatus male Bft15b)
ATGCACCAAAACGTCGGAAACAACACTCCAACCGCGCCCGCCGCCGTCGC
CGGCGAGGAATCGCCTGAAGCTCACCCCAGAAGCCGCCCTAGGCTTGAGA
CACCGCCAAAAAGCGGTGCCGGCGGCAACAGCAGCACGGCAGGGGTGGAA
GGCGGCCAAAGCGGAATCTGTAAACTGGGTAGCGACAGTCCGAGGCCTGG
TGGCCTGAATGGTGACTCTGCAGCTTGGCTGACGAGCACGGGCGAAGAGG
CGATTTTCCGCCGCATCGTGATGTTCTTGTGA back to top
|