Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft1445_4 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Length | 188 |
| Hectar predicted targeting category | other localisation |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1445_4a-0001 ID=EsuBft1445_4a-0001|Name=EsuBft1445_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1889bp|location=Sequence derived from alignment at Scaffold_228:230042..235035- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
CCCCGTACGTGCCACCCTCACCCTTTGGTCCTCCTTGCCCCTATTTTTTT
TTCGAAGCAGCTGGACACTTGGCCCGCCGCACGGAAAAGCGAGAGAGAGA
GAGGAAAACAATGGAGAAAAAAAAGCACAGCAGGATGTATGATTTCCACC
AAGCCCAACAACTCGGACGCTTGCTATTTGTCGTGGGCGCGGCTTCCTGT
ACAGCAGCAAGTGAGCCATGGAGTGCCCGCCACCACCGGCCGACCACGGC
TCGGGCCAGCGTCGACGCGGCTTCTGCTCGGCGAGAGGAGGAACCGCCGC
TCCCCCCGCCGTTTCTGCTTGGCTCGCGAACGGCCAGCAGGGATGACGGA
AATCATGCGCAGCAATCATCCACAGGAGTAGTTGCAGCGAGTCTACGGTT
GTCGCCCTTCTCGCCAAAGCTCCTAGCTTCTCTGCTGCTGTCCCTGAGGG
GGGGGGCAGGCAGCAGCCCAGGAGACCCACCGAAAGCAGCGGCCAGGCTT
GGGAGAGAAAGACGGGCGGGTGGTGGCCGCGCAGGCTCTGGTAGTGACGG
TGGCAAGGAAGACGACTCGGAAGACGACTTGGAGGCCCTCCTTCGTTCCG
TGGGGAACGCCGACGACCCAGATGAGTCTCCGCTCGACCTCGAAGGTCTG
TCCGATCTCGGCGACTTCAGCGGTCTCGGCCGGCTCGACTTCTCCTCCGG
CAAGGACGATGGTTCCGATGACGGGTCCCAGATGGAGCGGGTAGTTGGGA
GGCAGGGCGAGGGTCTGGAGAACGAGGGGTCGGGTGCCGACGTGCGGGAG
GTAGGTGACGACGAGGAAGAGGAGATCGTGACTGCGGCAGCAGGGTGGGT
AGACGGCCCGACGAGCGATGACGAGGCCACCGGGCAAGGGGAGGAAGAGG
ATGAGGACGAGGACGAAGACGATGAGGAAGAGGAGAGCGGTGGTGCGGGG
GATCAACCTGACTACAGCGCCAGCGGCGGTGGCAGCAGCAGCAGTAGCAG
CGGAGACGGAAGCTGCAGGGACAACGCGGATGTCATGGAGGAGAACGACG
GCCACCAACTACCCGACAGCGTCGGAAGTCGCAGCTCTACTGACAGCAGA
AGCGGGACTGCAGCATCGAAGGACGAAGGGGAACGGCGGGAAGGTAGCAG
CGCGGTGTCGCCGGCAGTGGGAGCCGAAATGCCTGTCGAGAACAACAAGG
ACGACCAGTCGTCCTCCTTGTCGGACGCCGGGGATACCGCCGCGGCGGGC
GGGGCGAAACGGGGGCACGGCGGAGGGGACGTCGTGGGGAAGGGGGAGGA
GGGGAGTGACGATGAGTCCGTGGGGGCGAACGGCGGGAGCATCGAGAGTG
ACGGCAATGACGGAGGCGGTTATGTCGTCGACGGTGGCGCGAAGGGCTCG
GTCGATATGGACGGCGAGGGTGACGGAAGCGGCGGCGGCGGTTCCAGTGC
CGGCGGCCGGAGTGACGCGGACAACGTAACGGAAGGTGGAATAGAGAGCG
GGGATGTTGAAGGGGAGGGACGTGGGGGTAGCGAGGATACCCGGAGCGGG
GCGCGCCGTCTTGCCGGTGGGCGAGGGCCGGCTAGTGCAGGAAGCGAAGA
CGGCGTGGACGAGAGCGTGGAGGGCGATGGTGACGACGGCGACGTGGAGA
GCGGCAGTAGCGCTGCTGATGCCACTGCGGGCGAGACAGATAGCGAAGGT
GGCGGGGGAGCAGAGAGCGGGGACGGCAGTGATGACGATGAGGCGGAGCA
AGAAGAGCGTGCGGTTGGTGCGACGGCCCTAGGAAGCGGGAGCGATGACA
CGGACTGGAGTGGCGGGGATGACAACCGGGCGGGCGAAGCCGAGGAGAGG
CTTAAGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGNNN back to topprotein sequence of EsuBft1445_4a-0001 >EsuBft1445_4 ID=EsuBft1445_4|Name=EsuBft1445_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=593bp
MEKKKHSRMYDFHQAQQLGRLLFVVGAASCTAASEPWSARHHRPTTARAS
VDAASARREEEPPLPPPFLLGSRTASRDDGNHAQQSSTGVVAASLRLSPF
SPKLLASLLLSLRGGAGSSPGDPPKAAARLGRERRAGGGRAGSGSDGGKE
DDSEDDLEALLRSVGNADDPDESPLDLEGLSDLGDFSGLGRLDFSSGKDD
GSDDGSQMERVVGRQGEGLENEGSGADVREVGDDEEEEIVTAAAGWVDGP
TSDDEATGQGEEEDEDEDEDDEEEESGGAGDQPDYSASGGGSSSSSSGDG
SCRDNADVMEENDGHQLPDSVGSRSSTDSRSGTAASKDEGERREGSSAVS
PAVGAEMPVENNKDDQSSSLSDAGDTAAAGGAKRGHGGGDVVGKGEEGSD
DESVGANGGSIESDGNDGGGYVVDGGAKGSVDMDGEGDGSGGGGSSAGGR
SDADNVTEGGIESGDVEGEGRGGSEDTRSGARRLAGGRGPASAGSEDGVD
ESVEGDGDDGDVESGSSAADATAGETDSEGGGGAESGDGSDDDEAEQEER
AVGATALGSGSDDTDWSGGDDNRAGEAEERLKGEEEEEEEEEX back to topmRNA from alignment at Scaffold_228:230042..235035- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1445_4a-0001 ID=EsuBft1445_4a-0001|Name=EsuBft1445_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4994bp|location=Sequence derived from alignment at Scaffold_228:230042..235035- (Ectocarpus subulatus male Bft15b)
CCCCGTACGTGCCACCCTCACCCTTTGGTCCTCCTTGCCCCTATTTTTTT
TTCGAAGCAGCTGGACACTTGGCCCGCCGCACGGAAAAGCGAGAGAGAGA
GAGGAAAACAATGGAGAAAAAAAAGCACAGCAGGATGTATGATTTCCACC
AAGCCCAACAACTCGGACGCTTGCTATTTGTCGTGGGCGCGGCTTCCTGT
ACAGCAGCAAGTGAGCCATGGAGTGCCCGCCACCACCGGCCGACCACGGC
TCGGGCCAGCGTCGACGCGGCTTCTGCTCGGCGAGAGGAGGAACCGCCGC
TCCCCCCGCCGTTTCTGCTTGGCTCGCGAACGGCCAGCAGGGATGACGGA
AATCATGCGCAGCAATCATCCACAGGAGTAGTTGCAGCGAGTCTACGGTT
GTCGCCCTTCTCGCCAAAGCTCCTAGCTTCTCTGCTGCTGTCCCTGAGGG
GGGGGGCAGGCAGCAGCCCAGGAGACCCACCGAAAGCAGCGGCCAGGCTT
GGGAGAGAAAGACGGGCGGGTGGTGGCCGCGCAGGCTCTGGTAGTGACGG
TGGCAAGGAAGACGACTCGGAAGGTAGGCTGTTCAAGCAAACCCTACTAC
TGCTGTAGCTCTATTCACCTTGGCCTGGTTTCAGAACTCCTGAGGTTGCG
TAAGTTACCACCCCCTCCGCTGGAACCGGGTTTTCAAGGCCCGATTTGGT
CACACAAGGAAGAGGATGCCACAATCGGATAGAATATTTTTCGGAAGGGC
CTCGAACGAGACTGTTCCATCATGCACTGCTGTTCTTTCCCTGCTGTTTG
TTGCTGCTGCAGAGTATGTATTGCAGTCGAGCGCTTGAAAATCGGTCATT
GGGGGGGGGGGCTGTACCCATAGTCGTGCATGCCGAAGTCGTTAGACCAT
TGACCTCGCATCCCTACAAAGCCGGGACGGAGCACGCCGGGTTCTCACCG
GACCAGGCTCTCACATTACCAAGCGCGAAGCGCCGTGAGATATTCGGCGA
GTCGCATGAAGGGTGCGCTGCATCCTGCTAAGGGTTTNGGGGGGGGGGGG
GGGTGGTATCTTACAGAGTTTTTGAACACCTACGATGTTCAAAAACAATA
CATAGGTCGCTCTTGTACACAGCCGGGCCTGGCTGACTCTCGAATCGTCT
TGTAAACAGGCGCCACATTCGATTCACACCGAGGCGCCTCGAATGTGTTC
GCACGTATGTACATCGCGTGTTTTTCTGCAAGTACTCCCATAGAGACTCT
TGTGGTTTTGCGGACGGTTTGACACGTGTCAGTGAAGAGGTAGGTAGGTG
CTCTCAGTCCCAACTGTGAGAATTGTATTTTCCAGCGATTCTGCTTCAAA
ACTATACGTGGTGTCCAACTGCTACTGATATTGACAACGCTCTGATGTGC
ATGGCTCGTGGTGTGAGACAAGAGAGCGTGTGGACTTTGCCGAAACTTCG
TTTGCGTATTTTGTCGTCCTACAGCAGCGTACAGTAGTTATTAATGGCGA
CATGATGGGGCCCAATTTTCTGTGGTGATACGTGTTACGACACCTTTCAG
TGTTAAAGAGTACTACATGTTCAGTGTATTTTTTTCGTACAGCTACAACC
ATCCAGGGTCACACAAGAGAGGGTAAAAACGTGAAAAAACCGGGGCTATT
TTCTTTTTTTTTTTCGTGCCCCATCTTCTTCCTGCGGTGGCTGCTGATTT
TTCTTTTTCATCCCGAGAGGGCTCCAGCCGTTCCTTTCCCTCGTCGACGT
TAGGAAGCTTGGTACTCACGAGAGTTTTTCATCTTTTTTCGCTTGTTTTA
ACCGCAAAGTTGTAGAAGTCATTTATTCCATAGGGATTCCAACTCACGAT
TCTGCCATACTTGTTGCATGTTCAAGGTCACCATTATTGCAGCCTGTGAC
CACGGGAGTTGACCCCGTCAAGTGTTCGATTAGTACAGACAAAAAAAAGG
ATGTCACTGGGAAGAGAGAGCGGAATGTTTTTTCATGTGAAGACAAAAGC
AAGCAATCACAAAAACTAGACCATCGGTGCAACCGGCGAATAAAAGTACT
CCCCTGCCGGGAATTGAACCCGGGTCTCATCGGTGAAAGCGATATATCCT
AACCATTGGACTACAGAGGAGATTATACACACACGGAAGAATGAATACCC
CTAAAGCTTGCTGGCCTATGACACCTGTCAAGAGGTGGGCGGCTACCGTT
CAAGAGAGGGCTGGGACAAGCCGGTATTTCTCTCTTTAATCCGTTTTTCT
CTTAAACCGTAGTGTGAAATGTATGTTTTTCTCGTGGTCGTGACAAGGGA
GCTTGACGCTCTTATAATCGGTACACTCTCTTGAATAGTGTATCACCACT
GCTGTACCCCAACCACAATGTATGTACCAGCCATTCGGTTTCTCAACAAC
CCGTGGTGTCCATCTGCTACTGGAAATATGTATATGACACAAAGATAACA
CACCCCGCGGATACACTCTCAAAGCTCGAATACTCCACGACCAAGAGGAT
GTATAAGTAAACGAAACGATAACTTTTCGGAGAGATCTCGACCAAAAGAC
TTCAACGCCGCCGCTTTCGGCACCCCTAATCATTATGCTGTCGATAAATC
GAGCTCGAATGGAAAATCGCTCCAGGGTGCGTGTTATCTTGTGTCGTATA
CGGTAGACATCCGCTGGTGTGCTTCGCTCGTGATGTGAGACAAAAGAGCG
TTTGGACTTGAACGGGTCGCCGAGTTTTATGTGGACTTGTAGGCATTGCC
GCACTCGGAGGGAGCAAACATGTCGAATTCCGTTTATTCGAGCCGTGAAG
AATTCGGTCTGTAGGGTGTGCGAATTGGTTTACAAGCTACTTTTCCCTCG
ACCTACATACTTCTCTTTCGGTTGCCTTTTTTCGTGATTTCCACCGCGAC
CCCTTTTTTTCCTAGTCGACTCGGAGCCCCCCTGTTTATTGCGCTTCTCG
CGCTATCTGCAATATGTCCGCCACGACACCCAAGTTTATCACTACAAGTA
GAGGCCCCTGTTTAGTGCCGGGGTCTGCGCCGAAATTTCACCGGCACCAG
TGTACTCAAAGTACAGAACAACGACTTGGTATTCCAATGTGTGCGAGCCG
AAAACGCCGCTACTGTAGTCGACTTGGGAGGCCCACCTCAAAGCCCCTGC
CCCCCCCCCCGGCAGTCTGTTTCAGTTGGTTTTTTCGTGCTTTGTGCAAT
ATCTGTCTCGGCAACGACACCTTTTTTTCATCAATGGTCGGCGTGGATGC
CCGCCTCAACCCTCCTCCGCCCGCCTTCTCTTTCGATTGCTTTTCTCGTG
GTCTCCACCGCGACGCCTGTCTGTTACCTGTTGTCGACTTGNNNNNNNNN
NNNNNNNNNNNNNNNNCAATGGCCTAACCGCTAAGGCATGCAAAACATAG
GAGTACGCCTCCCCCCCCCCCCCCCCCCCCCCTCCGCTCCCCAAACGCGC
CTTCTCTCTCTTTTTTTTTTTTTCGTGCTTTATACAACCCCTCCGCCGCG
ACACCCTGTTTTTCAACTTGTCGACTCTTGGCCCACCTCACCCTCACCAC
CCCGCGCGCCTGTTTTTTCGATTACTTTTTCTGGTGCTTTTCACCGCTTG
CTTTTCTGGTGATTTTTCACCGCCTTCTTTTCTGGCGATTTTCGCTGCGA
CACAAACCTGTTCTTCAACTACAAATAGACGACTTGGAGGCCCTCCTTCG
TTCCGTGGGGAACGCCGACGACCCAGATGAGTCTCCGCTCGACCTCGAAG
GTCTGTCCGATCTCGGCGACTTCAGCGGTCTCGGCCGGCTCGACTTCTCC
TCCGGCAAGGACGATGGTTCCGATGACGGGTCCCAGATGGAGCGGGTAGT
TGGGAGGCAGGGCGAGGGTCTGGAGAACGAGGGGTCGGGTGCCGACGTGC
GGGAGGTAGGTGACGACGAGGAAGAGGAGATCGTGACTGCGGCAGCAGGG
TGGGTAGACGGCCCGACGAGCGATGACGAGGCCACCGGGCAAGGGGAGGA
AGAGGATGAGGACGAGGACGAAGACGATGAGGAAGAGGAGAGCGGTGGTG
CGGGGGATCAACCTGACTACAGCGCCAGCGGCGGTGGCAGCAGCAGCAGT
AGCAGCGGAGACGGAAGCTGCAGGGACAACGCGGATGTCATGGAGGAGAA
CGACGGCCACCAACTACCCGACAGCGTCGGAAGTCGCAGCTCTACTGACA
GCAGAAGCGGGACTGCAGCATCGAAGGACGAAGGGGAACGGCGGGAAGGT
AGCAGCGCGGTGTCGCCGGCAGTGGGAGCCGAAATGCCTGTCGAGAACAA
CAAGGACGACCAGTCGTCCTCCTTGTCGGACGCCGGGGATACCGCCGCGG
CGGGCGGGGCGAAACGGGGGCACGGCGGAGGGGACGTCGTGGGGAAGGGG
GAGGAGGGGAGTGACGATGAGTCCGTGGGGGCGAACGGCGGGAGCATCGA
GAGTGACGGCAATGACGGAGGCGGTTATGTCGTCGACGGTGGCGCGAAGG
GCTCGGTCGATATGGACGGCGAGGGTGACGGAAGCGGCGGCGGCGGTTCC
AGTGCCGGCGGCCGGAGTGACGCGGACAACGTAACGGAAGGTGGAATAGA
GAGCGGGGATGTTGAAGGGGAGGGACGTGGGGGTAGCGAGGATACCCGGA
GCGGGGCGCGCCGTCTTGCCGGTGGGCGAGGGCCGGCTAGTGCAGGAAGC
GAAGACGGCGTGGACGAGAGCGTGGAGGGCGATGGTGACGACGGCGACGT
GGAGAGCGGCAGTAGCGCTGCTGATGCCACTGCGGGCGAGACAGATAGCG
AAGGTGGCGGGGGAGCAGAGAGCGGGGACGGCAGTGATGACGATGAGGCG
GAGCAAGAAGAGCGTGCGGTTGGTGCGACGGCCCTAGGAAGCGGGAGCGA
TGACACGGACTGGAGTGGCGGGGATGACAACCGGGCGGGCGAAGCCGAGG
AGAGGCTTAAGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGNNN back to topCoding sequence (CDS) from alignment at Scaffold_228:230042..235035- >EsuBft1445_4a-0001 ID=EsuBft1445_4a-0001|Name=EsuBft1445_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1779bp|location=Sequence derived from alignment at Scaffold_228:230042..235035- (Ectocarpus subulatus male Bft15b)
ATGGAGAAAAAAAAGCACAGCAGGATGTATGATTTCCACCAAGCCCAACA
ACTCGGACGCTTGCTATTTGTCGTGGGCGCGGCTTCCTGTACAGCAGCAA
GTGAGCCATGGAGTGCCCGCCACCACCGGCCGACCACGGCTCGGGCCAGC
GTCGACGCGGCTTCTGCTCGGCGAGAGGAGGAACCGCCGCTCCCCCCGCC
GTTTCTGCTTGGCTCGCGAACGGCCAGCAGGGATGACGGAAATCATGCGC
AGCAATCATCCACAGGAGTAGTTGCAGCGAGTCTACGGTTGTCGCCCTTC
TCGCCAAAGCTCCTAGCTTCTCTGCTGCTGTCCCTGAGGGGGGGGGCAGG
CAGCAGCCCAGGAGACCCACCGAAAGCAGCGGCCAGGCTTGGGAGAGAAA
GACGGGCGGGTGGTGGCCGCGCAGGCTCTGGTAGTGACGGTGGCAAGGAA
GACGACTCGGAAGACGACTTGGAGGCCCTCCTTCGTTCCGTGGGGAACGC
CGACGACCCAGATGAGTCTCCGCTCGACCTCGAAGGTCTGTCCGATCTCG
GCGACTTCAGCGGTCTCGGCCGGCTCGACTTCTCCTCCGGCAAGGACGAT
GGTTCCGATGACGGGTCCCAGATGGAGCGGGTAGTTGGGAGGCAGGGCGA
GGGTCTGGAGAACGAGGGGTCGGGTGCCGACGTGCGGGAGGTAGGTGACG
ACGAGGAAGAGGAGATCGTGACTGCGGCAGCAGGGTGGGTAGACGGCCCG
ACGAGCGATGACGAGGCCACCGGGCAAGGGGAGGAAGAGGATGAGGACGA
GGACGAAGACGATGAGGAAGAGGAGAGCGGTGGTGCGGGGGATCAACCTG
ACTACAGCGCCAGCGGCGGTGGCAGCAGCAGCAGTAGCAGCGGAGACGGA
AGCTGCAGGGACAACGCGGATGTCATGGAGGAGAACGACGGCCACCAACT
ACCCGACAGCGTCGGAAGTCGCAGCTCTACTGACAGCAGAAGCGGGACTG
CAGCATCGAAGGACGAAGGGGAACGGCGGGAAGGTAGCAGCGCGGTGTCG
CCGGCAGTGGGAGCCGAAATGCCTGTCGAGAACAACAAGGACGACCAGTC
GTCCTCCTTGTCGGACGCCGGGGATACCGCCGCGGCGGGCGGGGCGAAAC
GGGGGCACGGCGGAGGGGACGTCGTGGGGAAGGGGGAGGAGGGGAGTGAC
GATGAGTCCGTGGGGGCGAACGGCGGGAGCATCGAGAGTGACGGCAATGA
CGGAGGCGGTTATGTCGTCGACGGTGGCGCGAAGGGCTCGGTCGATATGG
ACGGCGAGGGTGACGGAAGCGGCGGCGGCGGTTCCAGTGCCGGCGGCCGG
AGTGACGCGGACAACGTAACGGAAGGTGGAATAGAGAGCGGGGATGTTGA
AGGGGAGGGACGTGGGGGTAGCGAGGATACCCGGAGCGGGGCGCGCCGTC
TTGCCGGTGGGCGAGGGCCGGCTAGTGCAGGAAGCGAAGACGGCGTGGAC
GAGAGCGTGGAGGGCGATGGTGACGACGGCGACGTGGAGAGCGGCAGTAG
CGCTGCTGATGCCACTGCGGGCGAGACAGATAGCGAAGGTGGCGGGGGAG
CAGAGAGCGGGGACGGCAGTGATGACGATGAGGCGGAGCAAGAAGAGCGT
GCGGTTGGTGCGACGGCCCTAGGAAGCGGGAGCGATGACACGGACTGGAG
TGGCGGGGATGACAACCGGGCGGGCGAAGCCGAGGAGAGGCTTAAGGGGG
AGGAGGAGGAGGAGGAGGAGGAGGAGNNN back to top
|