EsuBft1439_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1439_4a-0001
Unique Name	EsuBft1439_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_444	contig	Scaffold_444:163520..170793 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1439_4
Owner	apollo_admin@sb-roscoff.fr
Nb exon	7
Length	208
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1439_4a	EsuBft1439_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_444 163520..170793 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1439_4a-0001	EsuBft1439_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_444 163520..170414 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1439_4a-0001-exon	agat-exon-84301	Ectocarpus subulatus male Bft15b	exon	Scaffold_444 163520..163522 +
EsuBft1439_4a-0001-exon	EsuBft1439_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_444 167657..167782 +
EsuBft1439_4a-0001-exon	agat-exon-84298	Ectocarpus subulatus male Bft15b	exon	Scaffold_444 167998..168585 +
EsuBft1439_4a-0001-exon	agat-exon-84299	Ectocarpus subulatus male Bft15b	exon	Scaffold_444 168811..168988 +
EsuBft1439_4a-0001-exon	agat-exon-84300	Ectocarpus subulatus male Bft15b	exon	Scaffold_444 169132..169679 +
EsuBft1439_4a-0001-exon	agat-exon-84302	Ectocarpus subulatus male Bft15b	exon	Scaffold_444 169897..170037 +
EsuBft1439_4a-0001-exon	agat-exon-84297	Ectocarpus subulatus male Bft15b	exon	Scaffold_444 170292..170793 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1439_4a-0001-cds	EsuBft1439_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_444 163520..163522 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1439_4a-0001-exon	agat-three_prime_utr-3869	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_444 170415..170793 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_444:163520..170793+
coding sequence from alignment at Scaffold_444:163520..170793+

spliced messenger RNA

>EsuBft1439_4a-0001 ID=EsuBft1439_4a-0001|Name=EsuBft1439_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2086bp|location=Sequence derived from alignment at Scaffold_444:163520..170793+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGGATCGATCGACAACACCACCTACCCGGAGATCGCGGCAGGCAT
CATCGCGGCGAAGACAGCGAAGCGCGAGGGTCCTGGTTTCCAACTGGAGG
GCGGCAAGGTCGTGGCGACTCTCGTGAATATTTCCTTCGACGGATCGTAT
CGCAACCGAAACCACACCTCACACGGCGTCAACGTCGTCGCGTCTGTGAA
GCGCATGAAGCCGGACCATCGGGGTCTCATGGATTCGGTGTTGGATCAAG
TAACCTTCGGCCGCCATATCGGCAAGGATGCCCCGCTTCAGCCCGTTTGC
GCTCTCAGCCGAAACAAGGGATTTTGCCGTGTTCACGGAAAGGCAGAAGA
TTGGGACAGCCGCAGGCGCCCTGCAAAGGGGTCGTCGCCCGAGGANCGAA
ACAAGGGATTTTGCCGTGTTCACGGAAAGGCAGAAGATTGGGACAGGCGC
AGGCGCCCTGCAAAGGGGTCGTCGCCCGAGGAGGAGGACGCCGCAAAAAG
ACTTCGTCATGGCAATTGCTACTCGTCCACATGCCTGCGCAGTCCTCTCA
GCGCCCCGGCCACCGAGCCGTTGGGCATCATGATCTTGTGCCTGCGGCTG
ATGTACGAAGGGTTCTGGGTGAACGCGTTTGCGCATGACCAGGATGCGGG
CATCGGACACATAGTGCGCGGGCTGTTCGACGACGCCCTCGAGTGCCTGG
ACAGGGCTCATATTCAGAAGAATATGAAGAAGGCCATCGTCAAGTTCGCT
TCGGGCTATGCTAGCAGGGCTTGTCGGTACTTTGCGTGGGTCGTACGGGA
AGCCAGGGAGGTGGTGGAGCGATGCGTGGACGACAGCATCACCCTCGCAG
AGGCTTTTACAGAGGGCTTTGCGCACCTCGTGTTCCACCTACAAGGCGTT
CACAAGTACTGTTCCTCGGGGTGCGCCGGGGCCGAGGAACATGTTGCGGA
AGGAGAGGAGCCTCGGGCTGGGAACGTGGAACAACCTGACATATTCGACA
TAGAAGAACTCCGGGTGGACTCCGAGCCTGACTTGGGTGCAACTGCGATG
CCGCAAAACCCCGTCACGAGGGCGACGCCGGGTGCCGGTGACGCCGAGGC
CTCATCGGCGGCAGGTGTCGGCGAAGATGTCGCCAAGAAGGGCGGAAAGA
AAAGTCTGCGACCGTGTAGGGGGTCGCAATTCACGGCCGCCAGCCTCAGA
CAGACGTTGGACGACACGGTCAGCCTGTCCAAGGTCAAGGAGCAGCTGTG
GGTCAGAGTCTCGTTGACGATACTCTTCTTCAGGGCGGCAGGGGGGGCGG
AGTCTCTCTCCGATAGGGGGAAGGCAATGCTCGACAGCTTTTACCAGGCG
GTAATGGATGCCACGGGCGCAGCGCGGCGAGTCTCAGATGTGGCGGATTC
CACTCGCGCCGATCTGGAACGGGCATGCGCGGGAGTACACGGGCACATGT
CGGAGAAGGAAAAACGGACAACACAAGTACCGCTCGCTGGCATCCCAGGG
CCTTGGGAGCCTGCCCGGACCGAGGAAGGCTACACTAGCCCGTGTGATGG
ACCTGCACGGCTAGTGCAAACCAGGGAAATCCAGGGGCGCAAGGAGGCGT
ACATCGGAGCGTCGGCAGCAGTTCTGGAGGCAGAAAGGATATTCCGGAAA
GAGACGGGCCGCACACTGACGGTGTCTGTGGTCGGATCCTCTCAGCGCGA
AACGTAGGTTCTACGGGTGCAACATTGTCCTTCCGCAGGGTATCCGATTT
CAATACGTACATGTTCGGCGCACTACTAGGACGAAGGACAATCACGCCGA
CACCCCATAGTCTTCAACTTACTCGTACACACCCCGGCTGAGTAGAACAC
AGACGACCCCTTCTATCCGACATTAGTGTGACACCCTTACCGCCCTCTTT
TGACACGAGGAAAAATCCCACGGCCCATCGACTTTTCGTTTTGACCCAGC
AGATGCAAGAAAAATTCACTTCAACCCTCAACACAACCGCATGCGCCCGG
CACCGTGTTTCTGTACCCCAACAGGTCCTCCGTGCGTCACCAGGCATGGT
CGGACAGTCGTCAGTGGACCTTCTTCTCGCACTGCT

protein sequence of EsuBft1439_4a-0001

>EsuBft1439_4 ID=EsuBft1439_4|Name=EsuBft1439_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=568bp
MDGSIDNTTYPEIAAGIIAAKTAKREGPGFQLEGGKVVATLVNISFDGSY
RNRNHTSHGVNVVASVKRMKPDHRGLMDSVLDQVTFGRHIGKDAPLQPVC
ALSRNKGFCRVHGKAEDWDSRRRPAKGSSPEXRNKGFCRVHGKAEDWDRR
RRPAKGSSPEEEDAAKRLRHGNCYSSTCLRSPLSAPATEPLGIMILCLRL
MYEGFWVNAFAHDQDAGIGHIVRGLFDDALECLDRAHIQKNMKKAIVKFA
SGYASRACRYFAWVVREAREVVERCVDDSITLAEAFTEGFAHLVFHLQGV
HKYCSSGCAGAEEHVAEGEEPRAGNVEQPDIFDIEELRVDSEPDLGATAM
PQNPVTRATPGAGDAEASSAAGVGEDVAKKGGKKSLRPCRGSQFTAASLR
QTLDDTVSLSKVKEQLWVRVSLTILFFRAAGGAESLSDRGKAMLDSFYQA
VMDATGAARRVSDVADSTRADLERACAGVHGHMSEKEKRTTQVPLAGIPG
PWEPARTEEGYTSPCDGPARLVQTREIQGRKEAYIGASAAVLEAERIFRK
ETGRTLTVSVVGSSQRET

mRNA from alignment at Scaffold_444:163520..170793+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1439_4a-0001 ID=EsuBft1439_4a-0001|Name=EsuBft1439_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=7274bp|location=Sequence derived from alignment at Scaffold_444:163520..170793+ (Ectocarpus subulatus male Bft15b)
ATGGTGCGTGGGTCCGTGCTTGGCGGACGCGACAGCGCAGCACACAGCAC
GCACCGCCAGTGCCGTGTTATATCCACACATNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNGATGGTCGTGGATGCGTGAAACTTTAATTTACG
TTGGCTCGCGCGCGCACGCTTGTTTGGGACCGTGCAGGACGGATCGATCG
ACAACACCACCTACCCGGAGATCGCGGCAGGCATCATCGCGGCGAAGACA
GCGAAGCGCGAGGGTCCTGGTTTCCAACTGGAGGGCGGCAAGGTCGTGGC
GACTCTCGTGAATGTAAGTGTTTATCCGCTGGTGTGCAGTGCTACTTTAT
GATACGCCACCCCCAACCGGATATTCAGACAGGAATCTCCCCGGTGCAAT
TGGGGTTAGGATAATTGGGCATTTTTGCCCCCCACGCACACACAACGAAG
CATCGCTGTCGCCTTCGTCATTTTTTGCATTTATTCACCGTGTTGCACCG
CTACGCGCGCACGACTACCACCCGGCAGATTTCCTTCGACGGATCGTATC
GCAACCGAAACCACACCTCACACGGCGTCAACGTCGTCGCGTCTGTGAAG
CGCATGAAGCCGGACCATCGGGGTCTCATGGATTCGGTGTTGGATCAAGT
AACCTTCGGCCGCCATATCGGCAAGGATGCCCCGCTTCAGCCCGTTTGCG
CTCTCAGCCGAAACAAGGGATTTTGCCGTGTTCACGGAAAGGCAGAAGAT
TGGGACAGCCGCAGGCGCCCTGCAAAGGGGTCGTCGCCCGAGGANCGAAA
CAAGGGATTTTGCCGTGTTCACGGAAAGGCAGAAGATTGGGACAGGCGCA
GGCGCCCTGCAAAGGGGTCGTCGCCCGAGGAGGAGGACGCCGCAAAAAGA
CTTCGTCATGGCAATTGCTACTCGTCCACATGCCTGCGCAGTCCTCTCAG
CGCCCCGGCCACCGAGCCGTTGGGCATCATGATCTTGTGCCTGCGGCTGA
TGTACGAAGGGTTCTGGGTGAACGCGTTTGCGCATGACCAGGATGCGGGC
ATCGGACACATAGTGCGCGGGCTGTTCGACGACGCCCTCGAGTGCCTGGA
CAGGGCTCATATTCAGGTCCGCATCTATTTAGCGTGCATTGCGAAATTAT
GCAAAACCTAGTTCTTGCATCCGTTAACTTTGTTGAAGGGTTTTTCGTTC
TTGCATCCGTTAACTTTGTTCAAGGGTTTTTCGTTCGGCCCCCTGCTACT
AATCGTTCGTAGGTTCGTAGGCGAATATCGGGTACCCCGCGTGGTGTAGT
GAATCACATCCTTGCGCGGTTTTCTCTCCGATATCGCGCAGAAGAATATG
AAGAAGGCCATCGTCAAGTTCGCTTCGGGCTATGCTAGCAGGGCTTGTCG
GTACTTTGCGTGGGTCGTACGGGAAGCCAGGGAGGTGGTGGAGCGATGCG
TGGACGACAGCATCACCCTCGCAGAGGCTTTTACAGAGGGCTTTGCGCAC
CTCGTGTTCCACCTACAAGGTGCGGAAGTAAGATTTTTGGTTTTTCCGAT
ACATATGTCTGCAGCGAACCCAGCAAGTGTGCCGATCAATGAAAGTTTTT
CTAGTTTTTTAGGCTGAACCTCTCTCGACCGCATTATTGCCTATTTTCCC
TCCAACCTTCAGGCGTTCACAAGTACTGTTCCTCGGGGTGCGCCGGGGCC
GAGGAACATGTTGCGGAAGGAGAGGAGCCTCGGGCTGGGAACGTGGAACA
ACCTGACATATTCGACATAGAAGAACTCCGGGTGGACTCCGAGCCTGACT
TGGGTGCAACTGCGATGCCGCAAAACCCCGTCACGAGGGCGACGCCGGGT
GCCGGTGACGCCGAGGCCTCATCGGCGGCAGGTGTCGGCGAAGATGTCGC
CAAGAAGGGCGGAAAGAAAAGTCTGCGACCGTGTAGGGGGTCGCAATTCA
CGGCCGCCAGCCTCAGACAGACGTTGGACGACACGGTCAGCCTGTCCAAG
GTCAAGGAGCAGCTGTGGGTCAGAGTCTCGTTGACGATACTCTTCTTCAG
GGCGGCAGGGGGGGCGGAGTCTCTCTCCGATAGGGGGAAGGCAATGCTCG
ACAGCTTTTACCAGGCGGTAATGGATGCCACGGGCGCAGCGCGGCGAGTC
TCAGATGTGGCGGATTCCACTCGCGCCGATCTGGAACGGGCATGCGCGGG
AGTACACGGGGTGAGTGTAGGGCTTGAAAATTGCCTGTTAGTCTTATTCA
TGAACTGCGGCTGTGCCGTCGAAGGTGAAGACGAATGGTTCTCGCATAGA
TGCGCACACGTCGTTTCCTATTCGCAATTTTACCCGTCCGTCCATGCATA
TTATACCCTCACGATTCCTCCCCTTCTCCTCTATCCGCCCTTGCTCTATG
ACGGAAATATTGGTTTTGTGTGGTCAGCACATGTCGGAGAAGGAAAAACG
GACAACACAAGTACCGCTCGCTGGCATCCCAGGGCCTTGGGAGCCTGCCC
GGACCGAGGAAGGCTACACTAGCCCGTGTGATGGACCTGCACGGCTAGTG
CAAACCAGGGAAATCCAGGTGCGGGAGTCAGTTTTGTGAACATGCGCTCC
GTAGAAGCAGACGACGAAGAAGCGATGGCACTCACGCAATCCAAGGTGGA
CTGTTACTTTGTTTGCCCCCCAACTCGATTTATTTTTTGCTCCGCCATAA
CGGCTCAGTGTATTATGGACCACAGCTGGCAGTCTTGTACTTCAAGAGAA
AACGGTAAGCCGATTACAGCCCGAGCAGCGTTTGATATATTCTCTCGCCC
CCCCGCCCCCTACAATTTCCAGGGGCGCAAGGAGGCGTACATCGGAGCGT
CGGCAGCAGTTCTGGAGGCAGAAAGGATATTCCGGAAAGAGACGGGCCGC
ACACTGACGGTGTCTGTGGTCGGATCCTCTCAGCGCGAAACGTAGGTTCT
ACGGGTGCAACATTGTCCTTCCGCAGGGTATCCGATTTCAATACGTACAT
GTTCGGCGCACTACTAGGACGAAGGACAATCACGCCGACACCCCATAGTC
TTCAACTTACTCGTACACACCCCGGCTGAGTAGAACACAGACGACCCCTT
CTATCCGACATTAGTGTGACACCCTTACCGCCCTCTTTTGACACGAGGAA
AAATCCCACGGCCCATCGACTTTTCGTTTTGACCCAGCAGATGCAAGAAA
AATTCACTTCAACCCTCAACACAACCGCATGCGCCCGGCACCGTGTTTCT
GTACCCCAACAGGTCCTCCGTGCGTCACCAGGCATGGTCGGACAGTCGTC
AGTGGACCTTCTTCTCGCACTGCT

Coding sequence (CDS) from alignment at Scaffold_444:163520..170793+

>EsuBft1439_4a-0001 ID=EsuBft1439_4a-0001|Name=EsuBft1439_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1707bp|location=Sequence derived from alignment at Scaffold_444:163520..170793+ (Ectocarpus subulatus male Bft15b)
ATGGACGGATCGATCGACAACACCACCTACCCGGAGATCGCGGCAGGCAT
CATCGCGGCGAAGACAGCGAAGCGCGAGGGTCCTGGTTTCCAACTGGAGG
GCGGCAAGGTCGTGGCGACTCTCGTGAATATTTCCTTCGACGGATCGTAT
CGCAACCGAAACCACACCTCACACGGCGTCAACGTCGTCGCGTCTGTGAA
GCGCATGAAGCCGGACCATCGGGGTCTCATGGATTCGGTGTTGGATCAAG
TAACCTTCGGCCGCCATATCGGCAAGGATGCCCCGCTTCAGCCCGTTTGC
GCTCTCAGCCGAAACAAGGGATTTTGCCGTGTTCACGGAAAGGCAGAAGA
TTGGGACAGCCGCAGGCGCCCTGCAAAGGGGTCGTCGCCCGAGGANCGAA
ACAAGGGATTTTGCCGTGTTCACGGAAAGGCAGAAGATTGGGACAGGCGC
AGGCGCCCTGCAAAGGGGTCGTCGCCCGAGGAGGAGGACGCCGCAAAAAG
ACTTCGTCATGGCAATTGCTACTCGTCCACATGCCTGCGCAGTCCTCTCA
GCGCCCCGGCCACCGAGCCGTTGGGCATCATGATCTTGTGCCTGCGGCTG
ATGTACGAAGGGTTCTGGGTGAACGCGTTTGCGCATGACCAGGATGCGGG
CATCGGACACATAGTGCGCGGGCTGTTCGACGACGCCCTCGAGTGCCTGG
ACAGGGCTCATATTCAGAAGAATATGAAGAAGGCCATCGTCAAGTTCGCT
TCGGGCTATGCTAGCAGGGCTTGTCGGTACTTTGCGTGGGTCGTACGGGA
AGCCAGGGAGGTGGTGGAGCGATGCGTGGACGACAGCATCACCCTCGCAG
AGGCTTTTACAGAGGGCTTTGCGCACCTCGTGTTCCACCTACAAGGCGTT
CACAAGTACTGTTCCTCGGGGTGCGCCGGGGCCGAGGAACATGTTGCGGA
AGGAGAGGAGCCTCGGGCTGGGAACGTGGAACAACCTGACATATTCGACA
TAGAAGAACTCCGGGTGGACTCCGAGCCTGACTTGGGTGCAACTGCGATG
CCGCAAAACCCCGTCACGAGGGCGACGCCGGGTGCCGGTGACGCCGAGGC
CTCATCGGCGGCAGGTGTCGGCGAAGATGTCGCCAAGAAGGGCGGAAAGA
AAAGTCTGCGACCGTGTAGGGGGTCGCAATTCACGGCCGCCAGCCTCAGA
CAGACGTTGGACGACACGGTCAGCCTGTCCAAGGTCAAGGAGCAGCTGTG
GGTCAGAGTCTCGTTGACGATACTCTTCTTCAGGGCGGCAGGGGGGGCGG
AGTCTCTCTCCGATAGGGGGAAGGCAATGCTCGACAGCTTTTACCAGGCG
GTAATGGATGCCACGGGCGCAGCGCGGCGAGTCTCAGATGTGGCGGATTC
CACTCGCGCCGATCTGGAACGGGCATGCGCGGGAGTACACGGGCACATGT
CGGAGAAGGAAAAACGGACAACACAAGTACCGCTCGCTGGCATCCCAGGG
CCTTGGGAGCCTGCCCGGACCGAGGAAGGCTACACTAGCCCGTGTGATGG
ACCTGCACGGCTAGTGCAAACCAGGGAAATCCAGGGGCGCAAGGAGGCGT
ACATCGGAGCGTCGGCAGCAGTTCTGGAGGCAGAAAGGATATTCCGGAAA
GAGACGGGCCGCACACTGACGGTGTCTGTGGTCGGATCCTCTCAGCGCGA
AACGTAG