EsuBft1439_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1439_3a-0001
Unique NameEsuBft1439_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_444contigScaffold_444:170795..171659 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1439_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length86
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1439_3aEsuBft1439_3aEctocarpus subulatus male Bft15bgeneScaffold_444 170795..171659 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1439_3a-0001-exonEsuBft1439_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_444 170795..171659 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1439_3a-0001-exonagat-five_prime_utr-2550Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_444 170795..170891 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1439_3a-0001-cdsEsuBft1439_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_444 170892..171659 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1439_3a-0001EsuBft1439_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_444 170892..171659 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1439_3a-0001 ID=EsuBft1439_3a-0001|Name=EsuBft1439_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=865bp|location=Sequence derived from alignment at Scaffold_444:170795..171659+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CAACGGATTGGGGGGTCACATCAGAGCGTCACAGCCGTGCGCATCTTGCG
ATTGCCATATCACGTTCATTACGACCTGCATTCGTTCGAGAGCCTTCATG
TATGGGTTGGGGACGAACTTCCTCGAGAGCATGAACGGCACCATCGCGGC
AAAGGCGACGAAGAGGTCTGACTTCAACCGCACCCACTGGTCCCGTGCAC
AGATCGCGATGATGAATCGAACCCACGACGATGGCCCGGTGGGCGTCGCT
AACCTGGTCCGCAGTCACATGGGTCTACCGCCACTCACGAACAGGGCGGC
GGAAAAGATGGAGGCACGTGACAGGAGGGGGAAGAAGGTCGTTGTCGGTC
AACTGCACCGGACAGAGGAACAGAGGACCAAGGCCAGCACGGACCGGTAC
AAAAACAAAGACAGGGTAACAACTCAGACAGCAGCCAACAAGGCCAACCA
CGACAAAAGGGCGAAGGAGAACAAGATCCTGCCTTACGGATACGGCACTC
ATGGGGTGGCAGCGCTCAGAAAGAAGCTTGCTGCCGAGGGCGAGGATGTC
GAAGGTACAGCAGATGGTGAGTCGGGTCGCACGTCCGGAAAGCAGAAGGG
GAAGAGGAAGAGGAAGGAGGCAGGTGGCACGGCGATCCCCGAGTACAATG
CTGGCGGGAGCAACACGGACAACAACGACAAGCTGGCAGCGGATGTCCGG
ATGGGAGGAACGAAGACCGGCGGCGTGTGTTCATCCTGCCTGGAGGCAGG
CGTTGGCCGCCAATTTTTGGTGGACGCACAACACGCGAGGAAGGGTGCGA
AAATTTGCAGCAGGACCCGCGAACAGTGGGGTGCTCGCGCAGCGAGCACC
AAGGATAAGTCGTAA
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protein sequence of EsuBft1439_3a-0001

>EsuBft1439_3 ID=EsuBft1439_3|Name=EsuBft1439_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=255bp
MYGLGTNFLESMNGTIAAKATKRSDFNRTHWSRAQIAMMNRTHDDGPVGV
ANLVRSHMGLPPLTNRAAEKMEARDRRGKKVVVGQLHRTEEQRTKASTDR
YKNKDRVTTQTAANKANHDKRAKENKILPYGYGTHGVAALRKKLAAEGED
VEGTADGESGRTSGKQKGKRKRKEAGGTAIPEYNAGGSNTDNNDKLAADV
RMGGTKTGGVCSSCLEAGVGRQFLVDAQHARKGAKICSRTREQWGARAAS
TKDKS
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mRNA from alignment at Scaffold_444:170795..171659+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1439_3a-0001 ID=EsuBft1439_3a-0001|Name=EsuBft1439_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=865bp|location=Sequence derived from alignment at Scaffold_444:170795..171659+ (Ectocarpus subulatus male Bft15b)
CAACGGATTGGGGGGTCACATCAGAGCGTCACAGCCGTGCGCATCTTGCG
ATTGCCATATCACGTTCATTACGACCTGCATTCGTTCGAGAGCCTTCATG
TATGGGTTGGGGACGAACTTCCTCGAGAGCATGAACGGCACCATCGCGGC
AAAGGCGACGAAGAGGTCTGACTTCAACCGCACCCACTGGTCCCGTGCAC
AGATCGCGATGATGAATCGAACCCACGACGATGGCCCGGTGGGCGTCGCT
AACCTGGTCCGCAGTCACATGGGTCTACCGCCACTCACGAACAGGGCGGC
GGAAAAGATGGAGGCACGTGACAGGAGGGGGAAGAAGGTCGTTGTCGGTC
AACTGCACCGGACAGAGGAACAGAGGACCAAGGCCAGCACGGACCGGTAC
AAAAACAAAGACAGGGTAACAACTCAGACAGCAGCCAACAAGGCCAACCA
CGACAAAAGGGCGAAGGAGAACAAGATCCTGCCTTACGGATACGGCACTC
ATGGGGTGGCAGCGCTCAGAAAGAAGCTTGCTGCCGAGGGCGAGGATGTC
GAAGGTACAGCAGATGGTGAGTCGGGTCGCACGTCCGGAAAGCAGAAGGG
GAAGAGGAAGAGGAAGGAGGCAGGTGGCACGGCGATCCCCGAGTACAATG
CTGGCGGGAGCAACACGGACAACAACGACAAGCTGGCAGCGGATGTCCGG
ATGGGAGGAACGAAGACCGGCGGCGTGTGTTCATCCTGCCTGGAGGCAGG
CGTTGGCCGCCAATTTTTGGTGGACGCACAACACGCGAGGAAGGGTGCGA
AAATTTGCAGCAGGACCCGCGAACAGTGGGGTGCTCGCGCAGCGAGCACC
AAGGATAAGTCGTAA
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Coding sequence (CDS) from alignment at Scaffold_444:170795..171659+

>EsuBft1439_3a-0001 ID=EsuBft1439_3a-0001|Name=EsuBft1439_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=768bp|location=Sequence derived from alignment at Scaffold_444:170795..171659+ (Ectocarpus subulatus male Bft15b)
ATGTATGGGTTGGGGACGAACTTCCTCGAGAGCATGAACGGCACCATCGC
GGCAAAGGCGACGAAGAGGTCTGACTTCAACCGCACCCACTGGTCCCGTG
CACAGATCGCGATGATGAATCGAACCCACGACGATGGCCCGGTGGGCGTC
GCTAACCTGGTCCGCAGTCACATGGGTCTACCGCCACTCACGAACAGGGC
GGCGGAAAAGATGGAGGCACGTGACAGGAGGGGGAAGAAGGTCGTTGTCG
GTCAACTGCACCGGACAGAGGAACAGAGGACCAAGGCCAGCACGGACCGG
TACAAAAACAAAGACAGGGTAACAACTCAGACAGCAGCCAACAAGGCCAA
CCACGACAAAAGGGCGAAGGAGAACAAGATCCTGCCTTACGGATACGGCA
CTCATGGGGTGGCAGCGCTCAGAAAGAAGCTTGCTGCCGAGGGCGAGGAT
GTCGAAGGTACAGCAGATGGTGAGTCGGGTCGCACGTCCGGAAAGCAGAA
GGGGAAGAGGAAGAGGAAGGAGGCAGGTGGCACGGCGATCCCCGAGTACA
ATGCTGGCGGGAGCAACACGGACAACAACGACAAGCTGGCAGCGGATGTC
CGGATGGGAGGAACGAAGACCGGCGGCGTGTGTTCATCCTGCCTGGAGGC
AGGCGTTGGCCGCCAATTTTTGGTGGACGCACAACACGCGAGGAAGGGTG
CGAAAATTTGCAGCAGGACCCGCGAACAGTGGGGTGCTCGCGCAGCGAGC
ACCAAGGATAAGTCGTAA
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