EsuBft1433_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1433_8a-0001
Unique NameEsuBft1433_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_647contigScaffold_647:400116..401396 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1433_8
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length123
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1433_8aEsuBft1433_8aEctocarpus subulatus male Bft15bgeneScaffold_647 400116..401396 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1433_8a-0001-exonEsuBft1433_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_647 400116..400424 +
EsuBft1433_8a-0001-exonagat-exon-93897Ectocarpus subulatus male Bft15bexonScaffold_647 400468..401396 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1433_8a-0001-cdsEsuBft1433_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_647 400116..400424 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1433_8a-0001-exonagat-three_prime_utr-3838Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_647 400945..401396 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1433_8a-0001EsuBft1433_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_647 400116..400944 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1433_8a-0001 ID=EsuBft1433_8a-0001|Name=EsuBft1433_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1238bp|location=Sequence derived from alignment at Scaffold_647:400116..401396+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGACACGCCCTCGTCGCTGCCGGCGTGGGCCGGGGCGGCGGGGCGGG
GAAACCAGCCGCTGCAGGATCGGAGCAAGGCGGAGATCGACTCCAGCAAC
CACAGGGGTCGGTGCAGCCACATCAGCAACAGCCATCGCATTTCTGCCAG
CTCCACGGCCCCAACAGCACCCACGAGACCTCCGAATGTCGCAAGCTACG
CAACGAATTCCTCGCCCACTACAACGAGTTCTGCGCGTACATGAGCGGGA
GGCGGGAGGCCCAGGGGTCGATCTTCCCTCGAGGCGGAGCTCAAGGCTCG
GGGCGGATGGTGCGGGCTGGAGTCGGAGCCACTCTCCAGCGCTGCCGGGA
CCGCCGCGTGGGCCAGGATCCGGAGCTGGAGGACAACTGCAGGGGCGCAA
CTCTGGGGGGCGTGGGTATGGTGGATACGGCCCTTGCCCCCCGGAAAGCC
GAGGTCGTCAGGTGGGCGGCCGTGGTGGTAATTGTCCGCCGTCCAACGTT
CCTCCCGCGCAGATTGCCAACGTACCGCGGCACTATTTTCCGGCTCATTT
CGCCGTCGGAGGTGGAGAACCGTCGGGCGGCGACATCACCTCGGGATGTG
AGGCCACGTCAGCGCCCGGATCTACACACAGCTGGATCCAACCACCTCCT
GAGACAGGCTACGGGTACGGGCTCGCGGCTCACGGAGTGGACCATGGCGG
AGGTCCCTACGGCAGCGCCGCCGGCGGGGGATACGGTTTCCACCAATTGC
CCGACGGCGGAGGGCTCTACCAGCAGCAAGAAGTGAGCAGTATACCACGC
TATCCTTCTGCTCCCGGACCGGACGCCCAACAACCACGAGCCTACGAGGC
CTTCGACACCTCGCAGCAGCATCAGCAGCAGCAGCACTACGGTGCACCCC
AGGCGACCACTTCTTCCTCCTCTCCCGCTCCAGCTCCAGGCGACGCTCTA
CCTCCAGCCTGCGATTCCCCTCTTCGTCTTCTCATGGCACGTGGCGTGTG
CCCTCGAGGCAAGTCTGAGATTGATTTTGGGAAGGATGTTGGTTTTTCGA
TGTCTAACGTGTTCACAAGTGCGGAGTCTGATGTGTCAATGCCTGGTGTT
CCCCGCGTGCCTGCTGTGCATGAACGTTCTGATGATGAGCTCGGTGTCTC
GAAGTTTGGTGTGTCTACTCATGATGTACCCCGCGTGCCCGTTGTATTTG
AGAGTCCTAATGAAGTGGTTGGCGTTTCGGAGTGTGAT
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protein sequence of EsuBft1433_8a-0001

>EsuBft1433_8 ID=EsuBft1433_8|Name=EsuBft1433_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=261bp
MRHALVAAGVGRGGGAGKPAAAGSEQGGDRLQQPQGSVQPHQQQPSHFCQ
LHGPNSTHETSECRKLRNEFLAHYNEFCAYMSGRREAQGSIFPRGGAQGS
GRMVRAGVGATLQRCRDRRVGQDPELEDNCRGATLGGVGMVDTALAPRKA
EVVRWAAVVVIVRRPTFLPRRLPTYRGTIFRLISPSEVENRRAATSPRDV
RPRQRPDLHTAGSNHLLRQATGTGSRLTEWTMAEVPTAAPPAGDTVSTNC
PTAEGSTSSKK
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mRNA from alignment at Scaffold_647:400116..401396+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1433_8a-0001 ID=EsuBft1433_8a-0001|Name=EsuBft1433_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1281bp|location=Sequence derived from alignment at Scaffold_647:400116..401396+ (Ectocarpus subulatus male Bft15b)
ATGAGACACGCCCTCGTCGCTGCCGGCGTGGGCCGGGGCGGCGGGGCGGG
GAAACCAGCCGCTGCAGGATCGGAGCAAGGCGGAGATCGACTCCAGCAAC
CACAGGGGTCGGTGCAGCCACATCAGCAACAGCCATCGCATTTCTGCCAG
CTCCACGGCCCCAACAGCACCCACGAGACCTCCGAATGTCGCAAGCTACG
CAACGAATTCCTCGCCCACTACAACGAGTTCTGCGCGTACATGAGCGGGA
GGCGGGAGGCCCAGGGGTCGATCTTCCCTCGAGGCGGAGCTCAAGGCTCG
GGGCGGATGGTTGGTGGCCCCTCTCGACAGCAGCCGTACCAAAACGAACA
AGGTGCGGGCTGGAGTCGGAGCCACTCTCCAGCGCTGCCGGGACCGCCGC
GTGGGCCAGGATCCGGAGCTGGAGGACAACTGCAGGGGCGCAACTCTGGG
GGGCGTGGGTATGGTGGATACGGCCCTTGCCCCCCGGAAAGCCGAGGTCG
TCAGGTGGGCGGCCGTGGTGGTAATTGTCCGCCGTCCAACGTTCCTCCCG
CGCAGATTGCCAACGTACCGCGGCACTATTTTCCGGCTCATTTCGCCGTC
GGAGGTGGAGAACCGTCGGGCGGCGACATCACCTCGGGATGTGAGGCCAC
GTCAGCGCCCGGATCTACACACAGCTGGATCCAACCACCTCCTGAGACAG
GCTACGGGTACGGGCTCGCGGCTCACGGAGTGGACCATGGCGGAGGTCCC
TACGGCAGCGCCGCCGGCGGGGGATACGGTTTCCACCAATTGCCCGACGG
CGGAGGGCTCTACCAGCAGCAAGAAGTGAGCAGTATACCACGCTATCCTT
CTGCTCCCGGACCGGACGCCCAACAACCACGAGCCTACGAGGCCTTCGAC
ACCTCGCAGCAGCATCAGCAGCAGCAGCACTACGGTGCACCCCAGGCGAC
CACTTCTTCCTCCTCTCCCGCTCCAGCTCCAGGCGACGCTCTACCTCCAG
CCTGCGATTCCCCTCTTCGTCTTCTCATGGCACGTGGCGTGTGCCCTCGA
GGCAAGTCTGAGATTGATTTTGGGAAGGATGTTGGTTTTTCGATGTCTAA
CGTGTTCACAAGTGCGGAGTCTGATGTGTCAATGCCTGGTGTTCCCCGCG
TGCCTGCTGTGCATGAACGTTCTGATGATGAGCTCGGTGTCTCGAAGTTT
GGTGTGTCTACTCATGATGTACCCCGCGTGCCCGTTGTATTTGAGAGTCC
TAATGAAGTGGTTGGCGTTTCGGAGTGTGAT
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Coding sequence (CDS) from alignment at Scaffold_647:400116..401396+

>EsuBft1433_8a-0001 ID=EsuBft1433_8a-0001|Name=EsuBft1433_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=786bp|location=Sequence derived from alignment at Scaffold_647:400116..401396+ (Ectocarpus subulatus male Bft15b)
ATGAGACACGCCCTCGTCGCTGCCGGCGTGGGCCGGGGCGGCGGGGCGGG
GAAACCAGCCGCTGCAGGATCGGAGCAAGGCGGAGATCGACTCCAGCAAC
CACAGGGGTCGGTGCAGCCACATCAGCAACAGCCATCGCATTTCTGCCAG
CTCCACGGCCCCAACAGCACCCACGAGACCTCCGAATGTCGCAAGCTACG
CAACGAATTCCTCGCCCACTACAACGAGTTCTGCGCGTACATGAGCGGGA
GGCGGGAGGCCCAGGGGTCGATCTTCCCTCGAGGCGGAGCTCAAGGCTCG
GGGCGGATGGTGCGGGCTGGAGTCGGAGCCACTCTCCAGCGCTGCCGGGA
CCGCCGCGTGGGCCAGGATCCGGAGCTGGAGGACAACTGCAGGGGCGCAA
CTCTGGGGGGCGTGGGTATGGTGGATACGGCCCTTGCCCCCCGGAAAGCC
GAGGTCGTCAGGTGGGCGGCCGTGGTGGTAATTGTCCGCCGTCCAACGTT
CCTCCCGCGCAGATTGCCAACGTACCGCGGCACTATTTTCCGGCTCATTT
CGCCGTCGGAGGTGGAGAACCGTCGGGCGGCGACATCACCTCGGGATGTG
AGGCCACGTCAGCGCCCGGATCTACACACAGCTGGATCCAACCACCTCCT
GAGACAGGCTACGGGTACGGGCTCGCGGCTCACGGAGTGGACCATGGCGG
AGGTCCCTACGGCAGCGCCGCCGGCGGGGGATACGGTTTCCACCAATTGC
CCGACGGCGGAGGGCTCTACCAGCAGCAAGAAGTGA
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