EsuBft1433_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1433_6a-0001
Unique NameEsuBft1433_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_647contigScaffold_647:387003..389858 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LSX2
ProteomeIdEsuBft1433_6
Protein domainsIPR001683
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length110
Hectar predicted targeting categoryother localisation
Evalue4.3e-65
EggNOG OGsKOG0998@1|root,KOG0998@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K12472
KEGG Pathwayko04144,map04144
Descriptionendocytosis
COG categoryS
BRITEko00000,ko00001,ko04131
Cross References
External references for this mRNA
DatabaseAccession
GO0035091
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1433_6aEsuBft1433_6aEctocarpus subulatus male Bft15bgeneScaffold_647 387003..389858 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1433_6a-0001-exonagat-exon-93891Ectocarpus subulatus male Bft15bexonScaffold_647 387003..387923 -
EsuBft1433_6a-0001-exonEsuBft1433_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_647 388640..388811 -
EsuBft1433_6a-0001-exonagat-exon-93890Ectocarpus subulatus male Bft15bexonScaffold_647 389851..389858 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1433_6a-0001-exonagat-three_prime_utr-3836Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_647 387003..387746 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1433_6a-0001-cdsEsuBft1433_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_647 387747..387923 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1433_6a-0001EsuBft1433_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_647 387747..389858 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1433_6a-0001 ID=EsuBft1433_6a-0001|Name=EsuBft1433_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1101bp|location=Sequence derived from alignment at Scaffold_647:387003..389858- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAAGGTACCCCCCCCCGCCAGCCGGCTACATCTACGTTGTGCAGGA
GCCCCAGCCAGGGCAAGTGCACGCGCCGCCTAGGGCGGTGCGAGCGGCAG
AGACGCCGTTCATCATCATGCGGGTCGCCTTGGCATCGTACCGCACGGGA
CAGGGGGGAGAGGTGCTCTTCGAAGTGCAGGTCACCATGAACGACGGCTA
CAAGTACGGTGTGCTCAGGCGCTACTCGCAGTTCGACCAGCTCCGAGAGC
GCGTTTCGCGGGTTATTCGCACGACGACCCCGCCCTTCCCCCCCAAGTGC
AGCATCCGGAGCTCGACCGTGGGGCTCGGACCGGCTGACTTGGAAGAGCG
GCGGTAAGAATGAGAGCGTGGTCATGGTCGATCGTGTGTGTATGTGTGTG
TGTGTTGGTCCCCTTTTTTGTTGCGCCAGTCTACACGCCAACACCGATAT
TTTTTCATGTCTGACGTATCAGCCGGGGTCACTCAAGGAGAAGGCCACAC
AGGAACTTTTGCCTTTTTTTGTTCTTGGTGCCCCACCTTTCTCCCTGCGC
CGCTTGCCTTAGTTTTTGTCGCGACAAGGGTTTAGCCATCATGCGACAAA
CCAAGACGTGACGTCATGCTTGTCTTGCACCACATGCCATGAACGGTTCT
CTGTGTTTGTAGACCGGGACGAAAACTAAACGTAAGAGTGCTGCAATATT
TCGTAGCAGCGTCTCCCGGCACCCTTGCAGGGGTTGCCACCGATCGCCAT
AGTGTTTCGAGGCTCAACACCTTAGACTACAGCTGTTGGACTTGCGATTG
AGAAGGCTTCAACCATTCCTGACGGTGACGGGAGAGCCTGCCAATCCCCT
CCACGATAAACACGCTTTTTGATACGACTCCCCCTCTTTGCCCAGCCACC
CTCCCTAGCCCACTGGATACCGCGTATGCCTAGTAAGGGGTGATGGTGCG
GTCAGATTAAACGTAATAGATACTAGCGACAAATATGGGTGGACAGCACC
CTCCCTCACAAGACCCTAGCAGCCGCCGTTGTACGCACACTACCTGCTCC
GTCCCCTCAAGGACGAGTGGTCAACCGTTTAATACCGAAGGCATGATAAC
G
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protein sequence of EsuBft1433_6a-0001

>EsuBft1433_6 ID=EsuBft1433_6|Name=EsuBft1433_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=118bp
MQRYPPPPAGYIYVVQEPQPGQVHAPPRAVRAAETPFIIMRVALASYRTG
QGGEVLFEVQVTMNDGYKYGVLRRYSQFDQLRERVSRVIRTTTPPFPPKC
SIRSSTVGLGPADLEERR
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mRNA from alignment at Scaffold_647:387003..389858-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1433_6a-0001 ID=EsuBft1433_6a-0001|Name=EsuBft1433_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2856bp|location=Sequence derived from alignment at Scaffold_647:387003..389858- (Ectocarpus subulatus male Bft15b)
ATGCAAAGGTAGGTGTGTGCTGTGGTGTGCCTGGGTGCGTGTGGGAAATG
TGGGAAAATCACAGGAGCTGTAGTGAGCCGGCAGGGCTCACATTGGGAAG
ACGACAGTGAAGTACAGAAGTACAAGAACCAGCAGCTATGGGTCTACTCG
CCCTCTCACTGATTGTTTTCACTGATCATTAGAGCATACTGAAATAGAGT
AGTTTCGGCTGCTTGACGGCTGATTTTTCGAGGTCTACAAGCCTAACCTG
CCCTACCGGCCGCACCGATACCACACGTACACCCTTTTATGACCCTTTTT
GTGCCCACCGTCCTGTCGTGGGCAGCCCTCATGGCCTATGGGTGGAGTAG
CTGGTCCGTCTACAGAAGAGCACGTCTCTTTCTGCTGTACTTCTGTCTCT
CTCTCCCGCACTCTCTCCTCCTCACTCTTTTTTTTTTGCTGAAGAAGAAG
ATTTAGACCCAAAGGGGTTCAGAGCAGGCTGTGAAAAGAGATTTTCCTCG
CTCTTCCCGATAGCACCCTTTGCCACACGTCCGCGTGTTGATTTGCACTC
TATCCGTTTTCCTGCGAATCCCGTTCCGTCTCAATTTATCAAGATACAGC
TGTCAGATGTGTTGATGCTGCAACCGCGTTTTCCGATTTCGTCGGCCCCG
TTTCAGCAAACCCGAAAGAGCCGGGACCGGCCCTTTGTGTTTCGTCGGGT
ACTGCTGTATCGCGTTACCTGAATCAGAGTACATCCGCAGTGAACAGTTT
CGCCCCGTCCTGTTGCAAACGCAGACACTTTCTGAACCACGTACAGATAG
GCAGACGCCTACCCTGCCGCTGCTGCTGCTGCTGCTGCTGCGCAGTATGC
ATCACTTTGTAGATCGCGCGGCTTGTAGCGATCACCTCTGCTCGTGGTGC
CCGTACTTGCTTACAATGGTGATCCCTATCCAAACGGCATCACCGGTACA
CAACGCCCCCCCCCCCTTCTTCGTCCCCAGGCTTGGTGGGTGCTGTGGCA
ACCGGAGCAGCCATCGCCACTGTAGTCGGCCCGCCCCCGCGCCGCAGGTA
CCCCCCCCCGCCAGCCGGCTACATCTACGTTGTGCAGGAGCCCCAGCCAG
GGCAAGTGCACGCGCCGCCTAGGGCGGTGCGAGCGGCAGAGACGCCGTTC
ATCATCATGCGGGTCGCCTTGGCATCGTACCGCACGGGACAGGGGGGAGA
GGTGCTCTTCGAAGTGCAGGTGAGAGAGTGACAGGGCGCCATGCCGAAGG
TCGCGAAATCGAAATCCACCACGGTCGGTCATGGGAGGGTGTGATATGTA
TGGTAGAGGCTACGCTGAATCAATGGTTGGATGTCCGTAGCCAGGCAGTA
GGGCGCCTGTCGCGGTTTGCGATCTCGGAGGAGGGCTTGAAAGCTGTGAG
AAAATGTTTCTCCCTAGGGCAGCGCGACCGTATCTATGGTTGTCACGCAC
CGTTCGTGGGTAACCAAGACACGTTCCATTAGTGACACAAAGCCAGTACT
GGAATGGTCTCGGCAACAACTCCATGCTGAGAGAGAGATTTTGTGCTGAA
GCAATACAGAGATCGGGACGTTTCCTCGATTTCTTGGAAGAGTTTTGAGC
CCCCGGGCGAGCAGCGTTAACGCCCCCTCTGGATTTGGCGTGCTCTTGTG
CGGCTGCTGTGACTGTGCACGCCTTGCGGCTTCCATAGAGTGGCGCTGTT
GCACGTACGGCGGGATACTGTACCTTGCCAGCAGCTCACAGTAGCTCGAA
GACCTCCCACTCTCTTACATGTTCCTCCACCCCCCCCATCAGAACGCGCC
ATTGCCATCTGGTGTCGTTGAGTCCCTTTCGTAGAGTGCGTTCGAGTGCG
CTCGAGTGCGCCCCTAACTTACTTCGCGTTACAACCGCTTCCCTTCCCTC
GTGCTGCTGCCGCTTCTCCGCCCTCCCCCTCCCAGGTCACCATGAACGAC
GGCTACAAGTACGGTGTGCTCAGGCGCTACTCGCAGTTCGACCAGCTCCG
AGAGCGCGTTTCGCGGGTTATTCGCACGACGACCCCGCCCTTCCCCCCCA
AGTGCAGCATCCGGAGCTCGACCGTGGGGCTCGGACCGGCTGACTTGGAA
GAGCGGCGGTAAGAATGAGAGCGTGGTCATGGTCGATCGTGTGTGTATGT
GTGTGTGTGTTGGTCCCCTTTTTTGTTGCGCCAGTCTACACGCCAACACC
GATATTTTTTCATGTCTGACGTATCAGCCGGGGTCACTCAAGGAGAAGGC
CACACAGGAACTTTTGCCTTTTTTTGTTCTTGGTGCCCCACCTTTCTCCC
TGCGCCGCTTGCCTTAGTTTTTGTCGCGACAAGGGTTTAGCCATCATGCG
ACAAACCAAGACGTGACGTCATGCTTGTCTTGCACCACATGCCATGAACG
GTTCTCTGTGTTTGTAGACCGGGACGAAAACTAAACGTAAGAGTGCTGCA
ATATTTCGTAGCAGCGTCTCCCGGCACCCTTGCAGGGGTTGCCACCGATC
GCCATAGTGTTTCGAGGCTCAACACCTTAGACTACAGCTGTTGGACTTGC
GATTGAGAAGGCTTCAACCATTCCTGACGGTGACGGGAGAGCCTGCCAAT
CCCCTCCACGATAAACACGCTTTTTGATACGACTCCCCCTCTTTGCCCAG
CCACCCTCCCTAGCCCACTGGATACCGCGTATGCCTAGTAAGGGGTGATG
GTGCGGTCAGATTAAACGTAATAGATACTAGCGACAAATATGGGTGGACA
GCACCCTCCCTCACAAGACCCTAGCAGCCGCCGTTGTACGCACACTACCT
GCTCCGTCCCCTCAAGGACGAGTGGTCAACCGTTTAATACCGAAGGCATG
ATAACG
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Coding sequence (CDS) from alignment at Scaffold_647:387003..389858-

>EsuBft1433_6a-0001 ID=EsuBft1433_6a-0001|Name=EsuBft1433_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=357bp|location=Sequence derived from alignment at Scaffold_647:387003..389858- (Ectocarpus subulatus male Bft15b)
ATGCAAAGGTACCCCCCCCCGCCAGCCGGCTACATCTACGTTGTGCAGGA
GCCCCAGCCAGGGCAAGTGCACGCGCCGCCTAGGGCGGTGCGAGCGGCAG
AGACGCCGTTCATCATCATGCGGGTCGCCTTGGCATCGTACCGCACGGGA
CAGGGGGGAGAGGTGCTCTTCGAAGTGCAGGTCACCATGAACGACGGCTA
CAAGTACGGTGTGCTCAGGCGCTACTCGCAGTTCGACCAGCTCCGAGAGC
GCGTTTCGCGGGTTATTCGCACGACGACCCCGCCCTTCCCCCCCAAGTGC
AGCATCCGGAGCTCGACCGTGGGGCTCGGACCGGCTGACTTGGAAGAGCG
GCGGTAA
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